CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSCRIPTION 01-DEC-01 1KHX  ***

Normal Mode Analysis for ID 2604171715543070501

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0552
mode 8 1.60 0.0730
mode 9 2.54 0.0270
mode 10 4.39 0.0740
mode 11 5.07 0.2398
mode 12 5.10 0.0383
mode 13 7.37 0.3576
mode 14 8.14 0.3304
mode 15 9.39 0.1818
mode 16 9.44 0.1664
mode 17 10.88 0.1720
mode 18 13.08 0.3073
mode 19 13.31 0.4065
mode 20 13.51 0.1404
mode 21 13.91 0.1739
mode 22 15.00 0.3874
mode 23 15.84 0.4243
mode 24 16.56 0.2267
mode 25 16.63 0.2645
mode 26 16.92 0.1927
mode 27 17.56 0.3950
mode 28 18.19 0.1675
mode 29 18.56 0.2123
mode 30 19.13 0.5325
mode 31 19.37 0.2001
mode 32 19.88 0.3298
mode 33 20.19 0.2183
mode 34 20.93 0.3651
mode 35 21.09 0.3398
mode 36 21.67 0.3148
mode 37 21.87 0.5157
mode 38 22.05 0.5578
mode 39 22.44 0.4203
mode 40 22.77 0.2629
mode 41 23.36 0.0931
mode 42 23.48 0.1933
mode 43 24.01 0.6850
mode 44 24.31 0.2697
mode 45 24.90 0.3987
mode 46 25.19 0.3349
mode 47 25.43 0.2171
mode 48 25.51 0.3179
mode 49 26.13 0.6061
mode 50 26.63 0.3247
mode 51 26.86 0.0324
mode 52 26.99 0.3693
mode 53 27.33 0.2739
mode 54 27.42 0.3168
mode 55 27.93 0.3984
mode 56 28.29 0.6174
mode 57 28.44 0.4849
mode 58 28.63 0.2479
mode 59 28.97 0.4039
mode 60 29.32 0.5088
mode 61 29.39 0.4511
mode 62 29.97 0.1620
mode 63 30.07 0.4140
mode 64 30.34 0.2824
mode 65 30.63 0.3955
mode 66 31.07 0.3040
mode 67 31.09 0.4219
mode 68 31.41 0.4032
mode 69 31.72 0.4073
mode 70 31.92 0.2625
mode 71 32.13 0.4013
mode 72 32.38 0.3396
mode 73 32.81 0.4698
mode 74 33.13 0.3422
mode 75 33.38 0.4473
mode 76 33.68 0.3523
mode 77 33.79 0.4048
mode 78 34.19 0.3535
mode 79 34.27 0.2188
mode 80 34.56 0.3760
mode 81 34.98 0.4510
mode 82 35.09 0.5586
mode 83 35.42 0.0343
mode 84 35.63 0.3638
mode 85 35.83 0.4297
mode 86 35.93 0.3592
mode 87 36.13 0.3598
mode 88 36.48 0.3657
mode 89 36.61 0.4779
mode 90 36.63 0.3020
mode 91 36.90 0.4481
mode 92 37.11 0.5009
mode 93 37.41 0.4730
mode 94 37.49 0.4978
mode 95 37.55 0.2555
mode 96 37.73 0.3638
mode 97 37.83 0.2801
mode 98 38.09 0.4842
mode 99 38.49 0.4536
mode 100 38.85 0.3616
mode 101 39.16 0.4687
mode 102 39.20 0.4087
mode 103 39.48 0.3826
mode 104 39.50 0.5379
mode 105 39.77 0.3125
mode 106 40.03 0.4765

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.