CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  5HT2AR_elNemo_NMA  ***

Normal Mode Analysis for ID 2604181804313498919

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2787
mode 8 1.08 0.4479
mode 9 1.18 0.3042
mode 10 1.33 0.4641
mode 11 1.37 0.2406
mode 12 1.52 0.4164
mode 13 1.69 0.1791
mode 14 1.87 0.5332
mode 15 1.99 0.2772
mode 16 2.03 0.5880
mode 17 2.11 0.4664
mode 18 2.15 0.3955
mode 19 2.19 0.3563
mode 20 2.25 0.2678
mode 21 2.36 0.3668
mode 22 2.40 0.4941
mode 23 2.48 0.4394
mode 24 2.55 0.5190
mode 25 2.59 0.4152
mode 26 2.66 0.4714
mode 27 2.71 0.5999
mode 28 2.80 0.5561
mode 29 2.84 0.3259
mode 30 2.92 0.4717
mode 31 2.97 0.4982
mode 32 2.98 0.4442
mode 33 3.04 0.3702
mode 34 3.11 0.5138
mode 35 3.19 0.5022
mode 36 3.24 0.3089
mode 37 3.28 0.5009
mode 38 3.34 0.5409
mode 39 3.35 0.4910
mode 40 3.43 0.5242
mode 41 3.46 0.4578
mode 42 3.49 0.3438
mode 43 3.52 0.4917
mode 44 3.55 0.5704
mode 45 3.70 0.4366
mode 46 3.70 0.4250
mode 47 3.73 0.4813
mode 48 3.76 0.3818
mode 49 3.80 0.3767
mode 50 3.84 0.2053
mode 51 3.90 0.4627
mode 52 3.91 0.2292
mode 53 4.03 0.3756
mode 54 4.05 0.4654
mode 55 4.07 0.4015
mode 56 4.09 0.3744
mode 57 4.12 0.4599
mode 58 4.18 0.4933
mode 59 4.21 0.4997
mode 60 4.25 0.4351
mode 61 4.28 0.3433
mode 62 4.30 0.4672
mode 63 4.34 0.4248
mode 64 4.35 0.2269
mode 65 4.41 0.3541
mode 66 4.43 0.4202
mode 67 4.49 0.3991
mode 68 4.52 0.4751
mode 69 4.56 0.4549
mode 70 4.58 0.4571
mode 71 4.59 0.4352
mode 72 4.64 0.5047
mode 73 4.66 0.6043
mode 74 4.68 0.5144
mode 75 4.70 0.3697
mode 76 4.74 0.5381
mode 77 4.77 0.4104
mode 78 4.82 0.4100
mode 79 4.85 0.4059
mode 80 4.87 0.5545
mode 81 4.89 0.5153
mode 82 4.95 0.4616
mode 83 4.96 0.4420
mode 84 5.02 0.4941
mode 85 5.04 0.4465
mode 86 5.05 0.4884
mode 87 5.10 0.5259
mode 88 5.13 0.4164
mode 89 5.16 0.4319
mode 90 5.16 0.3737
mode 91 5.21 0.4244
mode 92 5.24 0.4881
mode 93 5.28 0.1677
mode 94 5.31 0.5669
mode 95 5.33 0.5782
mode 96 5.36 0.5668
mode 97 5.42 0.3947
mode 98 5.43 0.4654
mode 99 5.44 0.5481
mode 100 5.49 0.5144
mode 101 5.50 0.4127
mode 102 5.53 0.5252
mode 103 5.55 0.5283
mode 104 5.57 0.4009
mode 105 5.61 0.3789
mode 106 5.64 0.4897

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.