Should you encounter any unexpected behaviour,
please let us know.
elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.

STDOUT:

Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 2604200930263786307.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 2604200930263786307.atom to be opened.

 Openam> File opened: 2604200930263786307.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =     99
            First residue number     =      1
            Last  residue number     =     99
            Number of atoms found    =    758
            Mean number per residue  =      7.7

 Pdbmat> Coordinate statistics: 
 =    15.024203 +/-     7.032393 From:    -2.489000 To:    29.786000
 =    32.249086 +/-     7.205859 From:    16.318000 To:    48.234000
 =    12.935642 +/-     9.229480 From:   -12.533000 To:    32.543000
 Pdbmat> Masses are all set to one.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijf

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is   9.0838 % Filled.
 Pdbmat>       234968  non-zero elements.
 Pdbmat>        25605 atom-atom interactions.

 Pdbmat> Number per atom=     67.56 +/-     24.09
         Maximum number =    117
         Minimum number =     12

 Pdbmat> Matrix trace   =  512100.    
 Pdbmat> Larger element =  457.167    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
using diagstd (there are 758 atoms in your structure)
 
ERROR: number of atoms is too large to use diagstd, that is, over 500
       please choose another option for NRBL (not diagstd)



STDERR:

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.