CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff8_ca  ***

CA strain for 2604200934113787483

---  normal mode 12  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0005
GLN 2ILE 3 -0.0001
ILE 3THR 4 0.0002
THR 4LEU 5 0.0003
LEU 5TRP 6 0.0002
TRP 6GLN 7 0.0001
GLN 7ARG 8 0.0002
ARG 8PRO 9 0.0004
PRO 9LEU 10 0.0001
LEU 10VAL 11 0.0001
VAL 11THR 12 -0.0001
THR 12ILE 13 0.0003
ILE 13LYS 14 -0.0005
LYS 14ILE 15 0.0002
ILE 15GLY 16 0.0000
GLY 16GLY 17 0.0002
GLY 17GLN 18 -0.0000
GLN 18LEU 19 -0.0001
LEU 19LYS 20 -0.0002
LYS 20GLU 21 -0.0003
GLU 21ALA 22 -0.0001
ALA 22LEU 23 0.0001
LEU 23LEU 24 0.0001
LEU 24ASP 25 -0.0001
ASP 25THR 26 0.0000
THR 26GLY 27 -0.0001
GLY 27ALA 28 -0.0003
ALA 28ASP 29 -0.0002
ASP 29ASP 30 -0.0003
ASP 30THR 31 0.0005
THR 31VAL 32 -0.0002
VAL 32LEU 33 -0.0003
LEU 33GLU 34 -0.0002
GLU 34GLU 35 0.0003
GLU 35MET 36 0.0002
MET 36SER 37 -0.0002
SER 37LEU 38 0.0004
LEU 38PRO 39 0.0001
PRO 39GLY 40 -0.0001
GLY 40ARG 41 -0.0001
ARG 41TRP 42 0.0003
TRP 42LYS 43 0.0003
LYS 43PRO 44 -0.0001
PRO 44LYS 45 -0.0003
LYS 45MET 46 0.0003
MET 46ILE 47 0.0001
ILE 47GLY 48 -0.0001
GLY 48GLY 49 -0.0005
GLY 49ILE 50 0.0000
ILE 50GLY 51 -0.0003
GLY 51GLY 52 -0.0004
GLY 52PHE 53 -0.0000
PHE 53ILE 54 -0.0001
ILE 54LYS 55 0.0002
LYS 55VAL 56 0.0002
VAL 56ARG 57 0.0001
ARG 57GLN 58 -0.0002
GLN 58TYR 59 -0.0004
TYR 59ASP 60 -0.0003
ASP 60GLN 61 0.0002
GLN 61ILE 62 0.0003
ILE 62LEU 63 -0.0002
LEU 63ILE 64 -0.0002
ILE 64GLU 65 0.0000
GLU 65ILE 66 0.0001
ILE 66CYS 67 0.0001
CYS 67GLY 68 0.0002
GLY 68HIS 69 -0.0006
HIS 69LYS 70 0.0001
LYS 70ALA 71 -0.0001
ALA 71ILE 72 -0.0002
ILE 72GLY 73 0.0001
GLY 73THR 74 -0.0001
THR 74VAL 75 0.0002
VAL 75LEU 76 -0.0003
LEU 76VAL 77 0.0000
VAL 77GLY 78 0.0002
GLY 78PRO 79 -0.0001
PRO 79THR 80 0.0002
THR 80PRO 81 0.0002
PRO 81VAL 82 -0.0002
VAL 82ASN 83 -0.0000
ASN 83ILE 84 -0.0000
ILE 84ILE 85 0.0002
ILE 85GLY 86 0.0003
GLY 86ARG 87 0.0001
ARG 87ASN 88 -0.0002
ASN 88LEU 89 -0.0001
LEU 89LEU 90 0.0001
LEU 90THR 91 0.0000
THR 91GLN 92 -0.0000
GLN 92ILE 93 0.0002
ILE 93GLY 94 -0.0004
GLY 94CYS 95 -0.0000
CYS 95THR 96 0.0000
THR 96LEU 97 -0.0000
LEU 97ASN 98 0.0002

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.