CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff8_ca  ***

CA strain for 2604200934113787483

---  normal mode 15  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0090
GLN 2ILE 3 -0.0035
ILE 3THR 4 -0.0132
THR 4LEU 5 -0.0750
LEU 5TRP 6 -0.0073
TRP 6GLN 7 0.0046
GLN 7ARG 8 -0.0239
ARG 8PRO 9 -0.1605
PRO 9LEU 10 -0.0175
LEU 10VAL 11 0.0768
VAL 11THR 12 -0.0487
THR 12ILE 13 0.0075
ILE 13LYS 14 -0.0036
LYS 14ILE 15 0.0000
ILE 15GLY 16 0.0010
GLY 16GLY 17 -0.0036
GLY 17GLN 18 0.0028
GLN 18LEU 19 -0.0018
LEU 19LYS 20 -0.0015
LYS 20GLU 21 0.0111
GLU 21ALA 22 0.0029
ALA 22LEU 23 -0.0016
LEU 23LEU 24 0.0071
LEU 24ASP 25 0.0138
ASP 25THR 26 -0.0085
THR 26GLY 27 0.0002
GLY 27ALA 28 -0.0019
ALA 28ASP 29 0.0002
ASP 29ASP 30 0.0030
ASP 30THR 31 -0.0018
THR 31VAL 32 0.0036
VAL 32LEU 33 0.0024
LEU 33GLU 34 -0.0050
GLU 34GLU 35 0.0002
GLU 35MET 36 0.0024
MET 36SER 37 0.0126
SER 37LEU 38 0.0031
LEU 38PRO 39 -0.0004
PRO 39GLY 40 -0.0028
GLY 40ARG 41 -0.0014
ARG 41TRP 42 0.0007
TRP 42LYS 43 -0.0042
LYS 43PRO 44 0.0113
PRO 44LYS 45 -0.0152
LYS 45MET 46 -0.0127
MET 46ILE 47 -0.0028
ILE 47GLY 48 -0.0122
GLY 48GLY 49 -0.0030
GLY 49ILE 50 -0.0083
ILE 50GLY 51 0.0027
GLY 51GLY 52 0.0069
GLY 52PHE 53 0.0170
PHE 53ILE 54 -0.0156
ILE 54LYS 55 -0.0046
LYS 55VAL 56 -0.0069
VAL 56ARG 57 -0.0175
ARG 57GLN 58 0.0004
GLN 58TYR 59 -0.0046
TYR 59ASP 60 -0.0032
ASP 60GLN 61 0.0021
GLN 61ILE 62 -0.0024
ILE 62LEU 63 -0.0021
LEU 63ILE 64 0.0017
ILE 64GLU 65 -0.0009
GLU 65ILE 66 -0.0000
ILE 66CYS 67 0.0021
CYS 67GLY 68 -0.0047
GLY 68HIS 69 0.0027
HIS 69LYS 70 0.0008
LYS 70ALA 71 -0.0009
ALA 71ILE 72 0.0014
ILE 72GLY 73 0.0007
GLY 73THR 74 -0.0005
THR 74VAL 75 -0.0006
VAL 75LEU 76 -0.0069
LEU 76VAL 77 -0.0059
VAL 77GLY 78 -0.0051
GLY 78PRO 79 0.0032
PRO 79THR 80 0.0032
THR 80PRO 81 0.0020
PRO 81VAL 82 0.0052
VAL 82ASN 83 -0.0061
ASN 83ILE 84 -0.0094
ILE 84ILE 85 0.0014
ILE 85GLY 86 0.0058
GLY 86ARG 87 0.0007
ARG 87ASN 88 -0.0014
ASN 88LEU 89 -0.0006
LEU 89LEU 90 -0.0076
LEU 90THR 91 -0.0093
THR 91GLN 92 0.0004
GLN 92ILE 93 0.0035
ILE 93GLY 94 0.0077
GLY 94CYS 95 -0.0025
CYS 95THR 96 -0.0043
THR 96LEU 97 0.0047
LEU 97ASN 98 -0.0013

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.