CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff8_ca  ***

CA strain for 2604200934113787483

---  normal mode 16  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0062
GLN 2ILE 3 -0.0094
ILE 3THR 4 0.0288
THR 4LEU 5 0.0607
LEU 5TRP 6 -0.0194
TRP 6GLN 7 -0.0310
GLN 7ARG 8 0.0359
ARG 8PRO 9 -0.0824
PRO 9LEU 10 0.0258
LEU 10VAL 11 0.0079
VAL 11THR 12 -0.0494
THR 12ILE 13 0.0039
ILE 13LYS 14 0.0147
LYS 14ILE 15 0.0002
ILE 15GLY 16 0.0001
GLY 16GLY 17 0.0019
GLY 17GLN 18 0.0031
GLN 18LEU 19 -0.0100
LEU 19LYS 20 0.0077
LYS 20GLU 21 0.0121
GLU 21ALA 22 -0.0275
ALA 22LEU 23 0.0352
LEU 23LEU 24 0.0078
LEU 24ASP 25 0.0143
ASP 25THR 26 -0.0113
THR 26GLY 27 0.0019
GLY 27ALA 28 -0.0034
ALA 28ASP 29 -0.0027
ASP 29ASP 30 -0.0009
ASP 30THR 31 0.0100
THR 31VAL 32 -0.0289
VAL 32LEU 33 -0.0215
LEU 33GLU 34 0.0323
GLU 34GLU 35 0.0131
GLU 35MET 36 -0.0216
MET 36SER 37 -0.0736
SER 37LEU 38 -0.0352
LEU 38PRO 39 -0.0162
PRO 39GLY 40 0.0298
GLY 40ARG 41 0.0058
ARG 41TRP 42 0.0323
TRP 42LYS 43 -0.0000
LYS 43PRO 44 0.0181
PRO 44LYS 45 0.0250
LYS 45MET 46 -0.0719
MET 46ILE 47 0.0579
ILE 47GLY 48 0.0177
GLY 48GLY 49 0.0399
GLY 49ILE 50 0.0401
ILE 50GLY 51 -0.0395
GLY 51GLY 52 -0.0316
GLY 52PHE 53 -0.1122
PHE 53ILE 54 0.0428
ILE 54LYS 55 0.1361
LYS 55VAL 56 -0.0469
VAL 56ARG 57 0.0702
ARG 57GLN 58 -0.0096
GLN 58TYR 59 -0.0540
TYR 59ASP 60 0.0263
ASP 60GLN 61 -0.0135
GLN 61ILE 62 0.0071
ILE 62LEU 63 0.0010
LEU 63ILE 64 -0.0035
ILE 64GLU 65 -0.0258
GLU 65ILE 66 0.0039
ILE 66CYS 67 0.0028
CYS 67GLY 68 -0.0082
GLY 68HIS 69 0.0084
HIS 69LYS 70 -0.0010
LYS 70ALA 71 0.0044
ALA 71ILE 72 0.0009
ILE 72GLY 73 0.0045
GLY 73THR 74 -0.0098
THR 74VAL 75 0.0275
VAL 75LEU 76 0.0086
LEU 76VAL 77 0.0367
VAL 77GLY 78 0.0517
GLY 78PRO 79 -0.0404
PRO 79THR 80 -0.0299
THR 80PRO 81 -0.0183
PRO 81VAL 82 0.0002
VAL 82ASN 83 0.0099
ASN 83ILE 84 -0.0193
ILE 84ILE 85 -0.0175
ILE 85GLY 86 0.0118
GLY 86ARG 87 -0.0087
ARG 87ASN 88 0.0150
ASN 88LEU 89 -0.0036
LEU 89LEU 90 -0.0238
LEU 90THR 91 -0.0132
THR 91GLN 92 0.0017
GLN 92ILE 93 -0.0082
ILE 93GLY 94 0.0223
GLY 94CYS 95 -0.0150
CYS 95THR 96 -0.0176
THR 96LEU 97 0.0159
LEU 97ASN 98 -0.0029

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.