CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff10_ca  ***

CA strain for 2604200934113787484

---  normal mode 12  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 -0.0142
GLN 2ILE 3 -0.0401
ILE 3THR 4 0.0017
THR 4LEU 5 -0.0175
LEU 5TRP 6 -0.0314
TRP 6GLN 7 0.0766
GLN 7ARG 8 -0.0492
ARG 8PRO 9 0.0326
PRO 9LEU 10 -0.0952
LEU 10VAL 11 0.0319
VAL 11THR 12 -0.0118
THR 12ILE 13 -0.0027
ILE 13LYS 14 0.0079
LYS 14ILE 15 0.0178
ILE 15GLY 16 0.0172
GLY 16GLY 17 0.0132
GLY 17GLN 18 0.0254
GLN 18LEU 19 -0.0235
LEU 19LYS 20 0.1088
LYS 20GLU 21 -0.0313
GLU 21ALA 22 -0.0292
ALA 22LEU 23 0.0079
LEU 23LEU 24 -0.0159
LEU 24ASP 25 -0.0191
ASP 25THR 26 -0.0043
THR 26GLY 27 0.0221
GLY 27ALA 28 -0.0086
ALA 28ASP 29 -0.0061
ASP 29ASP 30 0.0246
ASP 30THR 31 -0.0133
THR 31VAL 32 -0.0730
VAL 32LEU 33 -0.0340
LEU 33GLU 34 0.0734
GLU 34GLU 35 0.0162
GLU 35MET 36 0.1656
MET 36SER 37 0.0422
SER 37LEU 38 -0.0330
LEU 38PRO 39 0.0346
PRO 39GLY 40 -0.0211
GLY 40ARG 41 0.0305
ARG 41TRP 42 0.0080
TRP 42LYS 43 -0.0591
LYS 43PRO 44 -0.0059
PRO 44LYS 45 0.0336
LYS 45MET 46 -0.1547
MET 46ILE 47 0.1010
ILE 47GLY 48 -0.1695
GLY 48GLY 49 0.3924
GLY 49ILE 50 0.0387
ILE 50GLY 51 0.0173
GLY 51GLY 52 -0.0912
GLY 52PHE 53 -0.0745
PHE 53ILE 54 0.1333
ILE 54LYS 55 0.2665
LYS 55VAL 56 -0.0085
VAL 56ARG 57 0.1100
ARG 57GLN 58 -0.0119
GLN 58TYR 59 -0.0667
TYR 59ASP 60 0.0218
ASP 60GLN 61 -0.0210
GLN 61ILE 62 0.0124
ILE 62LEU 63 -0.0075
LEU 63ILE 64 -0.0061
ILE 64GLU 65 -0.0017
GLU 65ILE 66 0.0009
ILE 66CYS 67 -0.0170
CYS 67GLY 68 0.0094
GLY 68HIS 69 -0.0015
HIS 69LYS 70 0.0007
LYS 70ALA 71 0.0012
ALA 71ILE 72 -0.0016
ILE 72GLY 73 -0.0175
GLY 73THR 74 0.0000
THR 74VAL 75 0.0115
VAL 75LEU 76 -0.0297
LEU 76VAL 77 -0.0352
VAL 77GLY 78 0.0410
GLY 78PRO 79 -0.0361
PRO 79THR 80 0.1099
THR 80PRO 81 -0.1102
PRO 81VAL 82 0.0599
VAL 82ASN 83 -0.0099
ASN 83ILE 84 0.0045
ILE 84ILE 85 -0.0780
ILE 85GLY 86 0.0060
GLY 86ARG 87 -0.0020
ARG 87ASN 88 0.0509
ASN 88LEU 89 -0.0062
LEU 89LEU 90 0.0143
LEU 90THR 91 0.0024
THR 91GLN 92 -0.0027
GLN 92ILE 93 -0.0047
ILE 93GLY 94 0.0078
GLY 94CYS 95 0.0240
CYS 95THR 96 -0.0060
THR 96LEU 97 0.0510
LEU 97ASN 98 0.0189

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.