CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff10_ca  ***

CA strain for 2604200934113787484

---  normal mode 13  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 -0.5234
GLN 2ILE 3 -0.2346
ILE 3THR 4 -0.1456
THR 4LEU 5 0.0995
LEU 5TRP 6 -0.0715
TRP 6GLN 7 0.1832
GLN 7ARG 8 -0.3082
ARG 8PRO 9 -0.0078
PRO 9LEU 10 0.0277
LEU 10VAL 11 0.2226
VAL 11THR 12 -0.1026
THR 12ILE 13 0.0046
ILE 13LYS 14 0.0115
LYS 14ILE 15 -0.0933
ILE 15GLY 16 0.0095
GLY 16GLY 17 0.0108
GLY 17GLN 18 -0.0054
GLN 18LEU 19 -0.0402
LEU 19LYS 20 0.0360
LYS 20GLU 21 -0.0160
GLU 21ALA 22 0.0197
ALA 22LEU 23 0.0074
LEU 23LEU 24 -0.0596
LEU 24ASP 25 0.0255
ASP 25THR 26 -0.0510
THR 26GLY 27 -0.0415
GLY 27ALA 28 0.0111
ALA 28ASP 29 0.0082
ASP 29ASP 30 0.0388
ASP 30THR 31 -0.0248
THR 31VAL 32 0.0587
VAL 32LEU 33 0.0777
LEU 33GLU 34 0.0584
GLU 34GLU 35 -0.0856
GLU 35MET 36 -0.0189
MET 36SER 37 0.0320
SER 37LEU 38 0.0010
LEU 38PRO 39 -0.0089
PRO 39GLY 40 -0.0186
GLY 40ARG 41 0.0033
ARG 41TRP 42 -0.0026
TRP 42LYS 43 -0.0610
LYS 43PRO 44 -0.0039
PRO 44LYS 45 0.0405
LYS 45MET 46 -0.0399
MET 46ILE 47 0.1654
ILE 47GLY 48 0.0432
GLY 48GLY 49 0.1159
GLY 49ILE 50 -0.0427
ILE 50GLY 51 0.0024
GLY 51GLY 52 0.0697
GLY 52PHE 53 0.0207
PHE 53ILE 54 -0.0873
ILE 54LYS 55 0.0071
LYS 55VAL 56 0.0158
VAL 56ARG 57 0.0200
ARG 57GLN 58 0.0293
GLN 58TYR 59 0.0297
TYR 59ASP 60 0.0220
ASP 60GLN 61 -0.0131
GLN 61ILE 62 0.0699
ILE 62LEU 63 -0.0696
LEU 63ILE 64 -0.0079
ILE 64GLU 65 0.0311
GLU 65ILE 66 0.0168
ILE 66CYS 67 -0.0898
CYS 67GLY 68 0.0135
GLY 68HIS 69 -0.0224
HIS 69LYS 70 -0.0190
LYS 70ALA 71 0.0120
ALA 71ILE 72 0.0052
ILE 72GLY 73 0.0029
GLY 73THR 74 0.0421
THR 74VAL 75 -0.0485
VAL 75LEU 76 0.0384
LEU 76VAL 77 0.0580
VAL 77GLY 78 0.0173
GLY 78PRO 79 0.0410
PRO 79THR 80 0.0480
THR 80PRO 81 -0.0407
PRO 81VAL 82 -0.0101
VAL 82ASN 83 0.0137
ASN 83ILE 84 -0.0136
ILE 84ILE 85 -0.0321
ILE 85GLY 86 -0.0034
GLY 86ARG 87 0.0119
ARG 87ASN 88 0.0218
ASN 88LEU 89 -0.0309
LEU 89LEU 90 -0.0190
LEU 90THR 91 -0.1790
THR 91GLN 92 0.0453
GLN 92ILE 93 -0.1178
ILE 93GLY 94 -0.0029
GLY 94CYS 95 0.0676
CYS 95THR 96 -0.0588
THR 96LEU 97 0.0118
LEU 97ASN 98 -0.1672

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.