CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff10_ca  ***

CA strain for 2604200934113787484

---  normal mode 14  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.2107
GLN 2ILE 3 -0.0112
ILE 3THR 4 0.0497
THR 4LEU 5 -0.1139
LEU 5TRP 6 0.0850
TRP 6GLN 7 -0.0719
GLN 7ARG 8 0.3235
ARG 8PRO 9 0.0218
PRO 9LEU 10 -0.1069
LEU 10VAL 11 -0.0690
VAL 11THR 12 0.0382
THR 12ILE 13 0.0036
ILE 13LYS 14 -0.0058
LYS 14ILE 15 -0.0396
ILE 15GLY 16 -0.0023
GLY 16GLY 17 -0.0093
GLY 17GLN 18 -0.0049
GLN 18LEU 19 -0.0429
LEU 19LYS 20 0.0196
LYS 20GLU 21 -0.0237
GLU 21ALA 22 -0.0165
ALA 22LEU 23 -0.0075
LEU 23LEU 24 -0.0351
LEU 24ASP 25 -0.0680
ASP 25THR 26 0.0403
THR 26GLY 27 0.0078
GLY 27ALA 28 0.0380
ALA 28ASP 29 -0.0071
ASP 29ASP 30 0.0804
ASP 30THR 31 -0.0294
THR 31VAL 32 0.0065
VAL 32LEU 33 0.1501
LEU 33GLU 34 0.0423
GLU 34GLU 35 -0.1038
GLU 35MET 36 -0.0444
MET 36SER 37 0.0177
SER 37LEU 38 -0.0381
LEU 38PRO 39 0.0019
PRO 39GLY 40 -0.0164
GLY 40ARG 41 -0.0001
ARG 41TRP 42 0.0127
TRP 42LYS 43 -0.0823
LYS 43PRO 44 -0.0278
PRO 44LYS 45 0.0681
LYS 45MET 46 -0.0986
MET 46ILE 47 0.3351
ILE 47GLY 48 0.0766
GLY 48GLY 49 0.1976
GLY 49ILE 50 -0.0495
ILE 50GLY 51 0.0017
GLY 51GLY 52 0.1529
GLY 52PHE 53 0.0513
PHE 53ILE 54 -0.1536
ILE 54LYS 55 -0.0125
LYS 55VAL 56 0.0399
VAL 56ARG 57 0.0227
ARG 57GLN 58 0.0391
GLN 58TYR 59 0.0355
TYR 59ASP 60 0.0675
ASP 60GLN 61 -0.0206
GLN 61ILE 62 0.1200
ILE 62LEU 63 -0.1071
LEU 63ILE 64 0.0035
ILE 64GLU 65 0.0412
GLU 65ILE 66 -0.0014
ILE 66CYS 67 0.0313
CYS 67GLY 68 0.0103
GLY 68HIS 69 0.0027
HIS 69LYS 70 -0.0122
LYS 70ALA 71 -0.0098
ALA 71ILE 72 -0.0151
ILE 72GLY 73 0.0303
GLY 73THR 74 -0.0110
THR 74VAL 75 -0.0645
VAL 75LEU 76 0.0970
LEU 76VAL 77 0.0694
VAL 77GLY 78 -0.0010
GLY 78PRO 79 0.0499
PRO 79THR 80 0.1029
THR 80PRO 81 -0.1151
PRO 81VAL 82 0.0509
VAL 82ASN 83 -0.0133
ASN 83ILE 84 -0.0244
ILE 84ILE 85 -0.0652
ILE 85GLY 86 0.0090
GLY 86ARG 87 -0.0028
ARG 87ASN 88 -0.0143
ASN 88LEU 89 0.0053
LEU 89LEU 90 -0.0061
LEU 90THR 91 0.0216
THR 91GLN 92 -0.0387
GLN 92ILE 93 0.0003
ILE 93GLY 94 -0.0397
GLY 94CYS 95 0.0438
CYS 95THR 96 0.1128
THR 96LEU 97 -0.2429
LEU 97ASN 98 0.2004

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.