CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff10_ca  ***

CA strain for 2604200934113787484

---  normal mode 15  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.4116
GLN 2ILE 3 0.2350
ILE 3THR 4 -0.0180
THR 4LEU 5 0.1179
LEU 5TRP 6 -0.1032
TRP 6GLN 7 0.1777
GLN 7ARG 8 -0.3299
ARG 8PRO 9 0.0196
PRO 9LEU 10 0.0441
LEU 10VAL 11 -0.0285
VAL 11THR 12 0.0826
THR 12ILE 13 -0.0149
ILE 13LYS 14 -0.0012
LYS 14ILE 15 0.0803
ILE 15GLY 16 -0.0016
GLY 16GLY 17 -0.0242
GLY 17GLN 18 -0.0122
GLN 18LEU 19 0.0545
LEU 19LYS 20 -0.0641
LYS 20GLU 21 0.0429
GLU 21ALA 22 0.0120
ALA 22LEU 23 -0.0233
LEU 23LEU 24 0.0941
LEU 24ASP 25 0.0435
ASP 25THR 26 -0.0385
THR 26GLY 27 -0.0103
GLY 27ALA 28 -0.0244
ALA 28ASP 29 0.0113
ASP 29ASP 30 -0.0466
ASP 30THR 31 0.0443
THR 31VAL 32 -0.0179
VAL 32LEU 33 -0.0228
LEU 33GLU 34 -0.0595
GLU 34GLU 35 0.0573
GLU 35MET 36 -0.0564
MET 36SER 37 -0.0558
SER 37LEU 38 -0.0165
LEU 38PRO 39 0.0081
PRO 39GLY 40 0.0290
GLY 40ARG 41 -0.0133
ARG 41TRP 42 -0.0096
TRP 42LYS 43 0.0793
LYS 43PRO 44 0.0140
PRO 44LYS 45 -0.0157
LYS 45MET 46 -0.0405
MET 46ILE 47 0.0580
ILE 47GLY 48 0.1236
GLY 48GLY 49 0.4734
GLY 49ILE 50 0.0216
ILE 50GLY 51 0.0009
GLY 51GLY 52 0.2644
GLY 52PHE 53 0.0051
PHE 53ILE 54 -0.1035
ILE 54LYS 55 0.1410
LYS 55VAL 56 -0.0229
VAL 56ARG 57 -0.0194
ARG 57GLN 58 0.0047
GLN 58TYR 59 0.0014
TYR 59ASP 60 -0.0285
ASP 60GLN 61 0.0332
GLN 61ILE 62 -0.0723
ILE 62LEU 63 0.0746
LEU 63ILE 64 0.0185
ILE 64GLU 65 -0.0264
GLU 65ILE 66 -0.0279
ILE 66CYS 67 0.0550
CYS 67GLY 68 0.0057
GLY 68HIS 69 0.0236
HIS 69LYS 70 0.0250
LYS 70ALA 71 -0.0101
ALA 71ILE 72 0.0020
ILE 72GLY 73 0.0164
GLY 73THR 74 -0.0281
THR 74VAL 75 0.0358
VAL 75LEU 76 0.0436
LEU 76VAL 77 -0.0197
VAL 77GLY 78 -0.0293
GLY 78PRO 79 0.0124
PRO 79THR 80 0.0516
THR 80PRO 81 -0.1105
PRO 81VAL 82 0.0215
VAL 82ASN 83 -0.0131
ASN 83ILE 84 -0.0020
ILE 84ILE 85 0.0065
ILE 85GLY 86 0.0197
GLY 86ARG 87 -0.0099
ARG 87ASN 88 -0.0631
ASN 88LEU 89 0.0321
LEU 89LEU 90 -0.0046
LEU 90THR 91 0.1302
THR 91GLN 92 -0.0192
GLN 92ILE 93 0.1198
ILE 93GLY 94 0.0280
GLY 94CYS 95 -0.0979
CYS 95THR 96 -0.0171
THR 96LEU 97 0.1673
LEU 97ASN 98 0.1904

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.