CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff10_ca  ***

CA strain for 2604200934113787484

---  normal mode 16  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 -0.4150
GLN 2ILE 3 -0.2729
ILE 3THR 4 0.0098
THR 4LEU 5 -0.1726
LEU 5TRP 6 0.1297
TRP 6GLN 7 -0.1481
GLN 7ARG 8 0.1800
ARG 8PRO 9 -0.0086
PRO 9LEU 10 0.0048
LEU 10VAL 11 -0.0103
VAL 11THR 12 -0.0305
THR 12ILE 13 0.0199
ILE 13LYS 14 0.0321
LYS 14ILE 15 0.0460
ILE 15GLY 16 0.0309
GLY 16GLY 17 0.0239
GLY 17GLN 18 -0.0171
GLN 18LEU 19 -0.0039
LEU 19LYS 20 0.1155
LYS 20GLU 21 -0.0197
GLU 21ALA 22 -0.0140
ALA 22LEU 23 0.0361
LEU 23LEU 24 -0.0838
LEU 24ASP 25 0.0307
ASP 25THR 26 -0.0356
THR 26GLY 27 -0.0645
GLY 27ALA 28 -0.0820
ALA 28ASP 29 0.0374
ASP 29ASP 30 -0.0679
ASP 30THR 31 0.0440
THR 31VAL 32 -0.0368
VAL 32LEU 33 -0.1092
LEU 33GLU 34 0.0322
GLU 34GLU 35 0.1479
GLU 35MET 36 0.1921
MET 36SER 37 0.0432
SER 37LEU 38 0.1000
LEU 38PRO 39 -0.0280
PRO 39GLY 40 -0.0331
GLY 40ARG 41 0.0205
ARG 41TRP 42 -0.0420
TRP 42LYS 43 0.0960
LYS 43PRO 44 -0.0322
PRO 44LYS 45 -0.0456
LYS 45MET 46 0.0913
MET 46ILE 47 -0.1605
ILE 47GLY 48 0.2893
GLY 48GLY 49 0.2861
GLY 49ILE 50 0.0522
ILE 50GLY 51 0.0005
GLY 51GLY 52 0.1904
GLY 52PHE 53 0.0445
PHE 53ILE 54 0.0239
ILE 54LYS 55 -0.1306
LYS 55VAL 56 -0.0557
VAL 56ARG 57 -0.1096
ARG 57GLN 58 -0.0403
GLN 58TYR 59 -0.0054
TYR 59ASP 60 -0.0767
ASP 60GLN 61 -0.0274
GLN 61ILE 62 -0.1593
ILE 62LEU 63 0.1500
LEU 63ILE 64 -0.0301
ILE 64GLU 65 -0.0543
GLU 65ILE 66 0.0470
ILE 66CYS 67 0.0032
CYS 67GLY 68 -0.0562
GLY 68HIS 69 -0.0037
HIS 69LYS 70 0.0013
LYS 70ALA 71 0.0222
ALA 71ILE 72 0.0129
ILE 72GLY 73 -0.0514
GLY 73THR 74 -0.0032
THR 74VAL 75 0.0613
VAL 75LEU 76 0.0198
LEU 76VAL 77 -0.0144
VAL 77GLY 78 -0.0551
GLY 78PRO 79 0.0023
PRO 79THR 80 0.0119
THR 80PRO 81 -0.0742
PRO 81VAL 82 0.0085
VAL 82ASN 83 0.0184
ASN 83ILE 84 0.0445
ILE 84ILE 85 -0.0145
ILE 85GLY 86 0.0027
GLY 86ARG 87 -0.0071
ARG 87ASN 88 0.0667
ASN 88LEU 89 -0.0004
LEU 89LEU 90 0.0249
LEU 90THR 91 -0.0923
THR 91GLN 92 0.0419
GLN 92ILE 93 -0.0223
ILE 93GLY 94 0.0185
GLY 94CYS 95 -0.0476
CYS 95THR 96 -0.1167
THR 96LEU 97 0.2612
LEU 97ASN 98 -0.3757

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.