CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff10_ca  ***

CA strain for 2604200934113787484

---  normal mode 8  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0204
GLN 2ILE 3 -0.0488
ILE 3THR 4 0.0048
THR 4LEU 5 -0.0135
LEU 5TRP 6 -0.0265
TRP 6GLN 7 0.0802
GLN 7ARG 8 -0.1052
ARG 8PRO 9 0.0857
PRO 9LEU 10 -0.2405
LEU 10VAL 11 0.1406
VAL 11THR 12 0.0647
THR 12ILE 13 -0.0147
ILE 13LYS 14 0.0063
LYS 14ILE 15 0.0021
ILE 15GLY 16 -0.0004
GLY 16GLY 17 -0.0049
GLY 17GLN 18 0.0039
GLN 18LEU 19 0.0242
LEU 19LYS 20 -0.0181
LYS 20GLU 21 0.0092
GLU 21ALA 22 -0.0144
ALA 22LEU 23 -0.0014
LEU 23LEU 24 -0.0106
LEU 24ASP 25 -0.0059
ASP 25THR 26 -0.0129
THR 26GLY 27 0.0098
GLY 27ALA 28 0.0023
ALA 28ASP 29 -0.0064
ASP 29ASP 30 -0.0129
ASP 30THR 31 -0.0059
THR 31VAL 32 0.0090
VAL 32LEU 33 -0.0021
LEU 33GLU 34 -0.0099
GLU 34GLU 35 0.0062
GLU 35MET 36 -0.0190
MET 36SER 37 -0.0109
SER 37LEU 38 0.0058
LEU 38PRO 39 -0.0023
PRO 39GLY 40 0.0055
GLY 40ARG 41 -0.0051
ARG 41TRP 42 -0.0036
TRP 42LYS 43 0.0140
LYS 43PRO 44 0.0268
PRO 44LYS 45 -0.0177
LYS 45MET 46 0.0267
MET 46ILE 47 -0.0416
ILE 47GLY 48 -0.0396
GLY 48GLY 49 -0.0615
GLY 49ILE 50 -0.0511
ILE 50GLY 51 -0.0045
GLY 51GLY 52 0.0230
GLY 52PHE 53 0.0368
PHE 53ILE 54 -0.0683
ILE 54LYS 55 0.0302
LYS 55VAL 56 0.0036
VAL 56ARG 57 0.0022
ARG 57GLN 58 0.0078
GLN 58TYR 59 0.0077
TYR 59ASP 60 -0.0121
ASP 60GLN 61 0.0122
GLN 61ILE 62 -0.0098
ILE 62LEU 63 0.0099
LEU 63ILE 64 0.0094
ILE 64GLU 65 0.0008
GLU 65ILE 66 0.0007
ILE 66CYS 67 0.0023
CYS 67GLY 68 0.0130
GLY 68HIS 69 -0.0008
HIS 69LYS 70 -0.0046
LYS 70ALA 71 -0.0018
ALA 71ILE 72 0.0026
ILE 72GLY 73 -0.0027
GLY 73THR 74 0.0084
THR 74VAL 75 0.0035
VAL 75LEU 76 -0.0090
LEU 76VAL 77 -0.0039
VAL 77GLY 78 -0.0021
GLY 78PRO 79 0.0058
PRO 79THR 80 -0.0096
THR 80PRO 81 0.0180
PRO 81VAL 82 -0.0219
VAL 82ASN 83 0.0084
ASN 83ILE 84 0.0149
ILE 84ILE 85 0.0167
ILE 85GLY 86 0.0109
GLY 86ARG 87 0.0030
ARG 87ASN 88 -0.0104
ASN 88LEU 89 -0.0017
LEU 89LEU 90 -0.0021
LEU 90THR 91 0.0002
THR 91GLN 92 -0.0100
GLN 92ILE 93 -0.0071
ILE 93GLY 94 -0.0143
GLY 94CYS 95 0.0238
CYS 95THR 96 0.0236
THR 96LEU 97 -0.0481
LEU 97ASN 98 -0.0036

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.