CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_open_cutoff10_ca  ***

CA strain for 2604200934113787484

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 -0.0401
GLN 2ILE 3 0.2186
ILE 3THR 4 0.0506
THR 4LEU 5 -0.0995
LEU 5TRP 6 -0.0118
TRP 6GLN 7 0.0897
GLN 7ARG 8 -0.0874
ARG 8PRO 9 0.0066
PRO 9LEU 10 -0.0218
LEU 10VAL 11 0.0306
VAL 11THR 12 -0.1320
THR 12ILE 13 0.0089
ILE 13LYS 14 -0.0025
LYS 14ILE 15 -0.0086
ILE 15GLY 16 0.0004
GLY 16GLY 17 -0.0004
GLY 17GLN 18 -0.0134
GLN 18LEU 19 -0.0126
LEU 19LYS 20 -0.0164
LYS 20GLU 21 0.0423
GLU 21ALA 22 0.0146
ALA 22LEU 23 -0.0149
LEU 23LEU 24 0.0550
LEU 24ASP 25 0.0360
ASP 25THR 26 -0.0068
THR 26GLY 27 0.0038
GLY 27ALA 28 0.0044
ALA 28ASP 29 0.0036
ASP 29ASP 30 0.0144
ASP 30THR 31 0.0174
THR 31VAL 32 0.0126
VAL 32LEU 33 0.0192
LEU 33GLU 34 -0.0119
GLU 34GLU 35 -0.0103
GLU 35MET 36 -0.0234
MET 36SER 37 0.0012
SER 37LEU 38 -0.0026
LEU 38PRO 39 -0.0056
PRO 39GLY 40 0.0018
GLY 40ARG 41 -0.0017
ARG 41TRP 42 0.0051
TRP 42LYS 43 0.0072
LYS 43PRO 44 -0.0626
PRO 44LYS 45 0.0363
LYS 45MET 46 -0.0208
MET 46ILE 47 0.0501
ILE 47GLY 48 0.1435
GLY 48GLY 49 0.0188
GLY 49ILE 50 0.0946
ILE 50GLY 51 0.0043
GLY 51GLY 52 -0.0152
GLY 52PHE 53 -0.0594
PHE 53ILE 54 0.1645
ILE 54LYS 55 -0.1479
LYS 55VAL 56 -0.0175
VAL 56ARG 57 -0.0465
ARG 57GLN 58 -0.0181
GLN 58TYR 59 -0.0037
TYR 59ASP 60 0.0148
ASP 60GLN 61 -0.0092
GLN 61ILE 62 0.0112
ILE 62LEU 63 -0.0112
LEU 63ILE 64 -0.0035
ILE 64GLU 65 -0.0045
GLU 65ILE 66 -0.0146
ILE 66CYS 67 0.0104
CYS 67GLY 68 -0.0187
GLY 68HIS 69 0.0066
HIS 69LYS 70 0.0049
LYS 70ALA 71 -0.0023
ALA 71ILE 72 -0.0033
ILE 72GLY 73 0.0191
GLY 73THR 74 -0.0164
THR 74VAL 75 -0.0019
VAL 75LEU 76 0.0320
LEU 76VAL 77 0.0122
VAL 77GLY 78 -0.0100
GLY 78PRO 79 -0.0078
PRO 79THR 80 -0.0228
THR 80PRO 81 -0.0115
PRO 81VAL 82 0.0158
VAL 82ASN 83 -0.0167
ASN 83ILE 84 -0.0163
ILE 84ILE 85 0.0095
ILE 85GLY 86 0.0005
GLY 86ARG 87 0.0026
ARG 87ASN 88 -0.0336
ASN 88LEU 89 -0.0012
LEU 89LEU 90 -0.0102
LEU 90THR 91 0.0038
THR 91GLN 92 0.0038
GLN 92ILE 93 0.0258
ILE 93GLY 94 0.0128
GLY 94CYS 95 -0.0485
CYS 95THR 96 -0.0308
THR 96LEU 97 0.0565
LEU 97ASN 98 0.0361

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.