Should you encounter any unexpected behaviour,
please let us know.
elNémo has been hacked on november 27th.
It has been moved away and runs again.
Still some additional cleaning from time to time
Sorry for the inconvenience.

* hiv1_open_cutoff10_ca *

elNémo ID: 2604200934113787484

Job options:

ID        	=	 2604200934113787484
JOBID     	=	 hiv1_open_cutoff10_ca
USERID    	=	 cihan_local
PRIVAT    	=	 0

NMODES    	=	 10
DQMIN     	=	 -20
DQMAX     	=	 20
DQSTEP    	=	 20
DOGRAPHS  	=	 0

DOPROJMODS	=	 on
DORMSD    	=	 on

NRBL      	=	 -1
CUTOFF    	=	 10
CAONLY    	=	 0

Input data for this run:

HEADER hiv1_open_cutoff10_ca

REMARK   1 1HHP chain A aligned onto 1AJX chain A
REMARK   1 C-alpha atoms only for ELNemo / project NMA submission.
ATOM      1   CA PRO A   1      25.998  42.382   3.062  1.00 34.88           C
ATOM      2   CA GLN A   2      24.187  42.293  -0.316  1.00 35.15           C
ATOM      3   CA ILE A   3      22.790  38.658  -0.784  1.00 27.03           C
ATOM      4   CA THR A   4      21.535  37.479  -4.157  1.00 25.63           C
ATOM      5   CA LEU A   5      19.017  34.648  -4.421  1.00 22.06           C
ATOM      6   CA TRP A   6      20.677  32.492  -7.093  1.00 18.46           C
ATOM      7   CA GLN A   7      21.153  30.015  -4.170  1.00 27.79           C
ATOM      8   CA ARG A   8      19.042  29.651  -0.940  1.00 20.69           C
ATOM      9   CA PRO A   9      20.109  32.624   1.143  1.00 18.91           C
ATOM     10   CA LEU A  10      21.681  30.633   4.105  1.00 25.36           C
ATOM     11   CA VAL A  11      23.644  32.572   6.717  1.00 28.60           C
ATOM     12   CA THR A  12      25.466  31.761  10.015  1.00 36.63           C
ATOM     13   CA ILE A  13      23.709  32.753  13.158  1.00 34.39           C
ATOM     14   CA LYS A  14      25.122  32.679  16.644  1.00 42.45           C
ATOM     15   CA ILE A  15      22.606  31.865  19.392  1.00 43.02           C
ATOM     16   CA GLY A  16      23.414  30.272  22.733  1.00 45.75           C
ATOM     17   CA GLY A  17      27.190  30.156  22.024  1.00 48.69           C
ATOM     18   CA GLN A  18      25.921  27.571  19.590  1.00 47.74           C
ATOM     19   CA LEU A  19      26.632  28.587  16.033  1.00 43.44           C
ATOM     20   CA LYS A  20      24.024  27.408  13.408  1.00 40.02           C
ATOM     21   CA GLU A  21      23.133  28.345   9.806  1.00 33.74           C
ATOM     22   CA ALA A  22      19.625  29.546   8.892  1.00 26.75           C
ATOM     23   CA LEU A  23      17.547  30.722   5.927  1.00 20.24           C
ATOM     24   CA LEU A  24      16.644  34.476   5.626  1.00 20.88           C
ATOM     25   CA ASP A  25      13.012  33.983   4.677  1.00 21.20           C
ATOM     26   CA THR A  26      11.010  37.137   3.941  1.00 14.97           C
ATOM     27   CA GLY A  27       7.987  34.921   3.700  1.00  8.76           C
ATOM     28   CA ALA A  28       8.270  33.557   7.284  1.00 13.46           C
ATOM     29   CA ASP A  29       6.641  35.811   9.913  1.00 22.54           C
ATOM     30   CA ASP A  30       8.429  33.884  12.730  1.00 25.44           C
ATOM     31   CA THR A  31      11.880  32.394  13.446  1.00 19.78           C
ATOM     32   CA VAL A  32      11.863  28.626  14.015  1.00 15.10           C
ATOM     33   CA LEU A  33      15.062  27.040  15.036  1.00 32.78           C
ATOM     34   CA GLU A  34      16.156  23.538  15.581  1.00 36.50           C
ATOM     35   CA GLU A  35      16.060  22.076  19.051  1.00 33.44           C
ATOM     36   CA MET A  36      18.681  23.479  21.312  1.00 41.13           C
ATOM     37   CA SER A  37      18.731  24.487  24.909  1.00 48.07           C
ATOM     38   CA LEU A  38      18.098  27.968  25.532  1.00 43.41           C
ATOM     39   CA PRO A  39      18.168  29.080  29.181  1.00 48.56           C
ATOM     40   CA GLY A  40      14.741  30.610  29.596  1.00 48.64           C
ATOM     41   CA ARG A  41      11.104  30.422  30.470  1.00 50.88           C
ATOM     42   CA TRP A  42       9.116  29.260  27.555  1.00 37.65           C
ATOM     43   CA LYS A  43       5.448  29.112  26.626  1.00 40.69           C
ATOM     44   CA PRO A  44       3.990  26.335  24.288  1.00 45.30           C
ATOM     45   CA LYS A  45       3.084  27.123  20.651  1.00 41.04           C
ATOM     46   CA MET A  46       1.762  24.927  17.789  1.00 36.04           C
ATOM     47   CA ILE A  47       3.051  25.714  14.264  1.00 30.22           C
ATOM     48   CA GLY A  48       1.944  24.241  10.986  1.00 39.99           C
ATOM     49   CA GLY A  49       3.939  21.970   8.723  1.00 47.57           C
ATOM     50   CA ILE A  50       3.724  19.552   5.833  1.00 54.24           C
ATOM     51   CA GLY A  51       1.779  16.615   7.260  1.00 52.49           C
ATOM     52   CA GLY A  52       0.398  18.657  10.262  1.00 43.73           C
ATOM     53   CA PHE A  53       0.942  20.918  13.250  1.00 40.92           C
ATOM     54   CA ILE A  54       3.988  20.347  15.415  1.00 33.43           C
ATOM     55   CA LYS A  55       4.335  21.780  18.994  1.00 30.62           C
ATOM     56   CA VAL A  56       7.386  24.055  19.538  1.00 27.74           C
ATOM     57   CA ARG A  57       8.573  26.122  22.519  1.00 26.88           C
ATOM     58   CA GLN A  58       8.455  29.943  22.366  1.00 26.05           C
ATOM     59   CA TYR A  59      11.409  31.871  23.880  1.00 29.17           C
ATOM     60   CA ASP A  60      10.791  35.717  23.917  1.00 27.75           C
ATOM     61   CA GLN A  61      13.604  38.227  24.177  1.00 26.68           C
ATOM     62   CA ILE A  62      16.422  35.943  22.901  1.00 28.35           C
ATOM     63   CA LEU A  63      19.563  37.695  21.592  1.00 31.02           C
ATOM     64   CA ILE A  64      20.714  36.181  18.332  1.00 31.95           C
ATOM     65   CA GLU A  65      23.471  37.462  16.037  1.00 35.74           C
ATOM     66   CA ILE A  66      22.696  37.246  12.297  1.00 35.28           C
ATOM     67   CA CYS A  67      25.576  37.961   9.954  1.00 44.44           C
ATOM     68   CA GLY A  68      27.258  39.769  12.670  1.00 45.45           C
ATOM     69   CA HIS A  69      24.227  41.893  13.767  1.00 40.20           C
ATOM     70   CA LYS A  70      22.849  41.525  17.263  1.00 40.48           C
ATOM     71   CA ALA A  71      19.123  41.253  17.264  1.00 37.00           C
ATOM     72   CA ILE A  72      16.635  40.643  20.113  1.00 28.66           C
ATOM     73   CA GLY A  73      13.525  38.784  19.262  1.00 22.09           C
ATOM     74   CA THR A  74      11.433  35.768  19.923  1.00 23.11           C
ATOM     75   CA VAL A  75      12.593  32.461  18.480  1.00 27.03           C
ATOM     76   CA LEU A  76      10.415  29.343  18.348  1.00 24.93           C
ATOM     77   CA VAL A  77      12.623  26.163  19.106  1.00 18.76           C
ATOM     78   CA GLY A  78      11.283  22.868  17.758  1.00 22.24           C
ATOM     79   CA PRO A  79      11.703  19.862  15.385  1.00 25.97           C
ATOM     80   CA THR A  80      11.834  21.928  12.282  1.00 31.28           C
ATOM     81   CA PRO A  81      13.592  20.464   9.174  1.00 28.82           C
ATOM     82   CA VAL A  82      15.063  23.925   8.570  1.00 28.83           C
ATOM     83   CA ASN A  83      16.256  26.897  10.629  1.00 28.94           C
ATOM     84   CA ILE A  84      14.313  29.948   9.417  1.00 20.90           C
ATOM     85   CA ILE A  85      15.073  33.666  10.226  1.00 17.90           C
ATOM     86   CA GLY A  86      11.714  35.240   9.531  1.00 18.81           C
ATOM     87   CA ARG A  87      10.480  38.827   9.419  1.00 22.16           C
ATOM     88   CA ASN A  88      10.250  39.301  13.173  1.00 20.95           C
ATOM     89   CA LEU A  89      14.125  39.359  13.227  1.00 16.67           C
ATOM     90   CA LEU A  90      14.872  40.513   9.622  1.00 19.58           C
ATOM     91   CA THR A  91      13.413  43.860  10.761  1.00 17.45           C
ATOM     92   CA GLN A  92      15.899  44.346  13.613  1.00 20.97           C
ATOM     93   CA ILE A  93      18.968  43.723  11.502  1.00 23.58           C
ATOM     94   CA GLY A  94      17.561  46.235   8.945  1.00 27.50           C
ATOM     95   CA CYS A  95      16.872  43.829   6.027  1.00 27.44           C
ATOM     96   CA THR A  96      15.298  45.207   2.947  1.00 24.82           C
ATOM     97   CA LEU A  97      14.374  43.615  -0.412  1.00 24.24           C
ATOM     98   CA ASN A  98      15.879  45.706  -3.141  1.00 28.65           C
ATOM     99   CA PHE A  99      15.479  45.722  -6.928  1.00 33.20           C
END

A second structure was input as follows:


REMARK   1 1AJX chain A kept as the closed reference structure.
REMARK   1 C-alpha atoms only for ELNemo / project NMA submission.
ATOM      1   CA PRO A   1      29.924  39.009   5.093  1.00 31.10           C
ATOM      2   CA GLN A   2      29.862  36.882   1.967  1.00 27.74           C
ATOM      3   CA ILE A   3      28.873  33.386   2.940  1.00 22.14           C
ATOM      4   CA THR A   4      29.764  30.315   0.815  1.00 20.83           C
ATOM      5   CA LEU A   5      27.505  27.241   0.960  1.00 16.47           C
ATOM      6   CA TRP A   6      30.150  24.548   0.987  1.00 17.03           C
ATOM      7   CA GLN A   7      29.015  24.083   4.566  1.00 13.81           C
ATOM      8   CA ARG A   8      25.739  24.885   6.377  1.00 14.40           C
ATOM      9   CA PRO A   9      25.527  28.655   6.918  1.00 13.64           C
ATOM     10   CA LEU A  10      25.483  28.664  10.729  1.00 18.78           C
ATOM     11   CA VAL A  11      25.848  31.961  12.559  1.00 21.04           C
ATOM     12   CA THR A  12      25.581  33.072  16.239  1.00 23.55           C
ATOM     13   CA ILE A  13      22.524  34.883  17.304  1.00 19.80           C
ATOM     14   CA LYS A  14      21.804  36.687  20.619  1.00 23.86           C
ATOM     15   CA ILE A  15      18.231  36.419  21.764  1.00 26.62           C
ATOM     16   CA GLY A  16      16.762  36.716  25.261  1.00 36.09           C
ATOM     17   CA GLY A  17      20.223  37.616  26.334  1.00 38.57           C
ATOM     18   CA GLN A  18      21.216  34.119  25.244  1.00 35.97           C
ATOM     19   CA LEU A  19      23.768  33.175  22.575  1.00 32.56           C
ATOM     20   CA LYS A  20      22.694  30.432  20.153  1.00 26.87           C
ATOM     21   CA GLU A  21      23.737  28.864  16.844  1.00 23.95           C
ATOM     22   CA ALA A  22      21.310  29.194  13.904  1.00 13.92           C
ATOM     23   CA LEU A  23      21.053  28.407  10.284  1.00 13.69           C
ATOM     24   CA LEU A  24      20.452  31.263   7.649  1.00 12.55           C
ATOM     25   CA ASP A  25      17.571  29.703   5.727  1.00 12.57           C
ATOM     26   CA THR A  26      16.267  31.322   2.551  1.00  8.74           C
ATOM     27   CA GLY A  27      13.723  28.569   2.011  1.00  9.80           C
ATOM     28   CA ALA A  28      12.025  29.300   5.374  1.00 12.30           C
ATOM     29   CA ASP A  29       9.299  31.976   5.484  1.00 16.13           C
ATOM     30   CA ASP A  30       9.570  32.242   9.360  1.00 15.40           C
ATOM     31   CA THR A  31      12.156  32.046  12.048  1.00 10.39           C
ATOM     32   CA VAL A  32      11.795  29.021  14.293  1.00 16.49           C
ATOM     33   CA LEU A  33      13.866  28.307  17.370  1.00 14.42           C
ATOM     34   CA GLU A  34      14.005  25.325  19.698  1.00 19.00           C
ATOM     35   CA GLU A  35      12.073  25.411  22.988  1.00 18.91           C
ATOM     36   CA MET A  36      12.887  28.486  25.149  1.00 20.96           C
ATOM     37   CA SER A  37      10.924  30.993  27.051  1.00 28.77           C
ATOM     38   CA LEU A  38      10.307  34.461  25.915  1.00 27.71           C
ATOM     39   CA PRO A  39       8.258  37.000  27.707  1.00 34.84           C
ATOM     40   CA GLY A  40       4.990  37.984  26.248  1.00 36.49           C
ATOM     41   CA ARG A  41       1.695  36.819  25.062  1.00 38.25           C
ATOM     42   CA TRP A  42       1.896  34.086  22.441  1.00 29.99           C
ATOM     43   CA LYS A  43      -0.437  32.498  19.852  1.00 26.94           C
ATOM     44   CA PRO A  44      -0.457  28.778  18.766  1.00 22.19           C
ATOM     45   CA LYS A  45       0.531  28.095  15.153  1.00 18.93           C
ATOM     46   CA MET A  46       1.193  24.987  13.057  1.00 15.66           C
ATOM     47   CA ILE A  47       4.071  25.128  10.584  1.00 17.38           C
ATOM     48   CA GLY A  48       4.782  22.349   8.100  1.00 23.77           C
ATOM     49   CA GLY A  49       7.598  21.222   5.997  1.00 26.63           C
ATOM     50   CA ILE A  50       9.360  18.128   4.863  1.00 28.61           C
ATOM     51   CA GLY A  51       8.024  15.572   7.215  1.00 27.77           C
ATOM     52   CA GLY A  52       4.763  17.298   8.083  1.00 24.16           C
ATOM     53   CA PHE A  53       3.668  19.943  10.556  1.00 19.37           C
ATOM     54   CA ILE A  54       4.761  20.971  14.053  1.00 18.48           C
ATOM     55   CA LYS A  55       2.946  23.126  16.621  1.00 18.88           C
ATOM     56   CA VAL A  56       4.837  26.235  17.730  1.00 15.63           C
ATOM     57   CA ARG A  57       4.205  29.278  19.900  1.00 15.35           C
ATOM     58   CA GLN A  58       4.325  32.577  17.944  1.00 12.99           C
ATOM     59   CA TYR A  59       5.882  35.553  19.653  1.00 18.09           C
ATOM     60   CA ASP A  60       5.806  38.964  17.941  1.00 23.37           C
ATOM     61   CA GLN A  61       8.106  41.930  18.191  1.00 24.84           C
ATOM     62   CA ILE A  62      11.102  40.015  19.392  1.00 21.42           C
ATOM     63   CA LEU A  63      14.510  41.540  19.184  1.00 22.08           C
ATOM     64   CA ILE A  64      17.352  39.472  17.803  1.00 25.19           C
ATOM     65   CA GLU A  65      20.921  40.192  16.999  1.00 28.13           C
ATOM     66   CA ILE A  66      22.263  38.351  13.956  1.00 28.61           C
ATOM     67   CA CYS A  67      25.984  38.625  13.548  1.00 39.18           C
ATOM     68   CA GLY A  68      25.792  42.011  15.143  1.00 42.45           C
ATOM     69   CA HIS A  69      22.860  43.424  13.163  1.00 39.82           C
ATOM     70   CA LYS A  70      19.844  43.982  15.327  1.00 33.47           C
ATOM     71   CA ALA A  71      16.495  42.885  13.835  1.00 26.21           C
ATOM     72   CA ILE A  72      12.913  42.831  15.105  1.00 23.15           C
ATOM     73   CA GLY A  73      10.288  40.302  14.190  1.00 16.23           C
ATOM     74   CA THR A  74       8.084  37.367  14.900  1.00 14.90           C
ATOM     75   CA VAL A  75       9.778  34.308  16.282  1.00 14.31           C
ATOM     76   CA LEU A  76       8.185  30.822  16.453  1.00 14.31           C
ATOM     77   CA VAL A  77       9.303  28.539  19.331  1.00 13.61           C
ATOM     78   CA GLY A  78       8.842  24.825  19.221  1.00 13.86           C
ATOM     79   CA PRO A  79      10.291  21.401  18.747  1.00 17.06           C
ATOM     80   CA THR A  80      12.442  22.293  15.723  1.00 19.48           C
ATOM     81   CA PRO A  81      15.589  20.148  15.084  1.00 23.43           C
ATOM     82   CA VAL A  82      17.836  23.237  14.425  1.00 18.64           C
ATOM     83   CA ASN A  83      17.455  26.967  15.062  1.00 13.90           C
ATOM     84   CA ILE A  84      16.362  28.532  11.745  1.00 10.35           C
ATOM     85   CA ILE A  85      16.508  32.214  10.724  1.00  9.87           C
ATOM     86   CA GLY A  86      13.937  32.679   7.955  1.00  9.13           C
ATOM     87   CA ARG A  87      13.122  35.411   5.461  1.00  9.88           C
ATOM     88   CA ASN A  88      11.144  37.561   7.898  1.00 12.64           C
ATOM     89   CA LEU A  89      14.485  38.424   9.724  1.00 12.95           C
ATOM     90   CA LEU A  90      17.075  37.974   6.892  1.00 12.11           C
ATOM     91   CA THR A  91      15.410  40.784   4.956  1.00 12.71           C
ATOM     92   CA GLN A  92      15.955  43.110   7.979  1.00 11.49           C
ATOM     93   CA ILE A  93      19.717  42.536   8.020  1.00 13.77           C
ATOM     94   CA GLY A  94      19.957  43.094   4.332  1.00 15.64           C
ATOM     95   CA CYS A  95      20.851  39.521   3.349  1.00 16.34           C
ATOM     96   CA THR A  96      20.594  38.675  -0.403  1.00 14.04           C
ATOM     97   CA LEU A  97      21.345  35.553  -2.557  1.00 17.79           C
ATOM     98   CA ASN A  98      23.881  36.230  -5.297  1.00 20.38           C
ATOM     99   CA PHE A  99      25.114  34.224  -8.380  1.00 25.37           C
END

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.

Should you encounter any unexpected behaviour, please let us know. elNémo has been hacked on november 27th. It has been moved away and runs again. **Still some additional cleaning from time to time** Sorry for the inconvenience.