CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_closed_cutoff8_ca  ***

CA distance fluctuations for 2604200934113787486

---  normal mode 15  ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok
largest increasereflargest decrease
GLY 68 1.08 PRO 1 -0.83 ASN 98
ILE 93 1.32 GLN 2 -0.10 ASN 98
CYS 67 0.87 ILE 3 -0.73 ASN 98
CYS 95 0.72 THR 4 -0.20 PRO 81
LEU 97 1.34 LEU 5 -0.29 PRO 81
LEU 97 1.18 TRP 6 -0.30 PRO 81
LEU 97 0.88 GLN 7 -0.36 GLU 21
LEU 97 0.69 ARG 8 -0.41 VAL 82
LEU 97 0.37 PRO 9 -0.25 PRO 1
ILE 3 0.19 LEU 10 -0.22 GLN 7
ILE 3 0.51 VAL 11 -0.14 GLN 7
ILE 3 0.57 THR 12 -0.19 GLN 7
GLN 2 0.59 ILE 13 -0.12 GLN 7
GLN 2 0.60 LYS 14 -0.13 GLN 7
GLN 2 0.56 ILE 15 -0.13 GLN 7
GLN 2 0.50 GLY 16 -0.21 MET 36
GLN 2 0.50 GLY 17 -0.15 GLN 7
GLN 2 0.43 GLN 18 -0.21 GLN 7
ILE 3 0.42 LEU 19 -0.24 GLN 7
GLN 2 0.35 LYS 20 -0.30 GLN 7
ILE 3 0.30 GLU 21 -0.36 GLN 7
GLN 2 0.32 ALA 22 -0.21 GLN 7
ILE 50 0.24 LEU 23 -0.14 PRO 1
GLN 2 0.37 LEU 24 -0.21 PRO 1
ILE 50 0.41 ASP 25 -0.32 ILE 3
ILE 50 0.46 THR 26 -0.43 ILE 3
ILE 50 0.63 GLY 27 -0.46 ILE 3
GLY 49 0.59 ALA 28 -0.29 ILE 3
GLY 49 0.56 ASP 29 -0.20 ILE 3
GLY 49 0.43 ASP 30 -0.11 LEU 97
GLN 2 0.46 THR 31 -0.09 ASN 98
GLN 2 0.36 VAL 32 -0.10 ARG 8
GLN 2 0.34 LEU 33 -0.17 ARG 8
GLN 2 0.25 GLU 34 -0.24 GLN 7
GLN 2 0.26 GLU 35 -0.22 GLN 7
GLN 2 0.31 MET 36 -0.21 GLY 16
GLN 2 0.35 SER 37 -0.16 GLY 16
GLN 2 0.43 LEU 38 -0.09 GLN 7
GLN 2 0.46 PRO 39 -0.06 GLN 7
GLN 2 0.45 GLY 40 -0.05 GLN 7
GLN 2 0.40 ARG 41 -0.05 LEU 97
GLN 2 0.38 TRP 42 -0.06 LEU 97
GLN 2 0.34 LYS 43 -0.08 LEU 97
GLN 2 0.29 PRO 44 -0.08 ARG 8
GLN 2 0.27 LYS 45 -0.09 LEU 97
GLN 2 0.25 MET 46 -0.10 ILE 3
ASP 30 0.28 ILE 47 -0.12 ILE 3
ASP 29 0.42 GLY 48 -0.14 ILE 3
ALA 28 0.59 GLY 49 -0.16 ILE 3
GLY 27 0.63 ILE 50 -0.14 ILE 3
GLY 27 0.46 GLY 51 -0.10 ILE 3
ALA 28 0.36 GLY 52 -0.11 ILE 3
ASP 29 0.29 PHE 53 -0.10 ILE 3
GLN 2 0.22 ILE 54 -0.09 ARG 8
GLN 2 0.23 LYS 55 -0.10 ARG 8
GLN 2 0.27 VAL 56 -0.12 ARG 8
GLN 2 0.33 ARG 57 -0.09 ARG 8
GLN 2 0.39 GLN 58 -0.07 LEU 97
GLN 2 0.46 TYR 59 -0.05 LEU 97
GLN 2 0.52 ASP 60 -0.07 LEU 97
GLN 2 0.60 GLN 61 -0.06 MET 36
GLN 2 0.61 ILE 62 -0.09 MET 36
GLN 2 0.71 LEU 63 -0.10 MET 36
GLN 2 0.75 ILE 64 -0.08 MET 36
GLN 2 0.85 GLU 65 -0.06 MET 36
GLN 2 0.93 ILE 66 -0.05 ASN 98
GLN 2 0.89 CYS 67 -0.06 ASN 98
PRO 1 1.08 GLY 68 -0.04 MET 36
GLN 2 1.22 HIS 69 -0.04 MET 36
GLN 2 1.01 LYS 70 -0.06 MET 36
GLN 2 0.94 ALA 71 -0.06 MET 36
GLN 2 0.78 ILE 72 -0.06 MET 36
GLN 2 0.67 GLY 73 -0.07 LEU 97
GLN 2 0.55 THR 74 -0.08 LEU 97
GLN 2 0.50 VAL 75 -0.06 ASN 98
GLN 2 0.39 LEU 76 -0.07 ARG 8
GLN 2 0.34 VAL 77 -0.13 ARG 8
GLN 2 0.25 GLY 78 -0.17 ARG 8
GLN 2 0.18 PRO 79 -0.22 ARG 8
GLN 2 0.18 THR 80 -0.25 ARG 8
GLN 2 0.09 PRO 81 -0.37 ARG 8
GLY 51 0.14 VAL 82 -0.41 ARG 8
GLN 2 0.27 ASN 83 -0.26 ARG 8
GLN 2 0.32 ILE 84 -0.11 ASN 98
GLN 2 0.50 ILE 85 -0.11 ASN 98
GLN 2 0.47 GLY 86 -0.12 ASN 98
GLN 2 0.54 ARG 87 -0.19 LEU 97
GLN 2 0.62 ASN 88 -0.15 LEU 97
GLN 2 0.79 LEU 89 -0.08 LEU 97
GLN 2 0.84 LEU 90 -0.09 LEU 97
GLN 2 0.86 THR 91 -0.16 LEU 97
GLN 2 1.01 GLN 92 -0.08 LEU 97
GLN 2 1.32 ILE 93 -0.03 MET 36
GLN 2 1.20 GLY 94 -0.03 MET 36
GLN 2 0.97 CYS 95 -0.07 PRO 1
LEU 5 1.06 THR 96 -0.34 PRO 1
LEU 5 1.34 LEU 97 -0.41 PRO 1
TRP 6 0.95 ASN 98 -0.83 PRO 1

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.