CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_closed_cutoff8_ca  ***

CA strain for 2604200934113787486

---  normal mode 16  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0069
GLN 2ILE 3 -0.0025
ILE 3THR 4 0.0152
THR 4LEU 5 0.0543
LEU 5TRP 6 -0.0013
TRP 6GLN 7 -0.0617
GLN 7ARG 8 0.0813
ARG 8PRO 9 0.0445
PRO 9LEU 10 0.0566
LEU 10VAL 11 -0.0855
VAL 11THR 12 0.0068
THR 12ILE 13 0.0095
ILE 13LYS 14 0.0196
LYS 14ILE 15 -0.0026
ILE 15GLY 16 0.0037
GLY 16GLY 17 -0.0058
GLY 17GLN 18 0.0038
GLN 18LEU 19 -0.0039
LEU 19LYS 20 -0.0009
LYS 20GLU 21 0.0249
GLU 21ALA 22 -0.0175
ALA 22LEU 23 0.0632
LEU 23LEU 24 0.0551
LEU 24ASP 25 -0.0021
ASP 25THR 26 0.0030
THR 26GLY 27 0.0033
GLY 27ALA 28 0.0001
ALA 28ASP 29 -0.0005
ASP 29ASP 30 0.0020
ASP 30THR 31 0.0004
THR 31VAL 32 -0.0064
VAL 32LEU 33 -0.0099
LEU 33GLU 34 0.0021
GLU 34GLU 35 0.0005
GLU 35MET 36 -0.0106
MET 36SER 37 0.0003
SER 37LEU 38 -0.0031
LEU 38PRO 39 -0.0034
PRO 39GLY 40 0.0221
GLY 40ARG 41 0.0199
ARG 41TRP 42 0.0246
TRP 42LYS 43 0.0011
LYS 43PRO 44 -0.0033
PRO 44LYS 45 -0.0034
LYS 45MET 46 -0.0069
MET 46ILE 47 -0.0168
ILE 47GLY 48 0.0035
GLY 48GLY 49 0.0213
GLY 49ILE 50 -0.0217
ILE 50GLY 51 -0.0228
GLY 51GLY 52 0.0051
GLY 52PHE 53 0.0423
PHE 53ILE 54 0.0170
ILE 54LYS 55 -0.0165
LYS 55VAL 56 0.0016
VAL 56ARG 57 -0.0083
ARG 57GLN 58 -0.0095
GLN 58TYR 59 -0.0113
TYR 59ASP 60 0.0148
ASP 60GLN 61 -0.0016
GLN 61ILE 62 0.0025
ILE 62LEU 63 -0.0101
LEU 63ILE 64 -0.0022
ILE 64GLU 65 -0.0155
GLU 65ILE 66 -0.0039
ILE 66CYS 67 0.0033
CYS 67GLY 68 -0.0048
GLY 68HIS 69 0.0039
HIS 69LYS 70 -0.0024
LYS 70ALA 71 0.0058
ALA 71ILE 72 -0.0024
ILE 72GLY 73 0.0008
GLY 73THR 74 -0.0028
THR 74VAL 75 0.0071
VAL 75LEU 76 0.0101
LEU 76VAL 77 0.0032
VAL 77GLY 78 0.0042
GLY 78PRO 79 0.0020
PRO 79THR 80 0.0015
THR 80PRO 81 -0.0018
PRO 81VAL 82 0.0060
VAL 82ASN 83 -0.0098
ASN 83ILE 84 -0.0212
ILE 84ILE 85 -0.0105
ILE 85GLY 86 0.0082
GLY 86ARG 87 -0.0058
ARG 87ASN 88 -0.0091
ASN 88LEU 89 0.0047
LEU 89LEU 90 -0.0215
LEU 90THR 91 -0.0266
THR 91GLN 92 0.0051
GLN 92ILE 93 -0.0131
ILE 93GLY 94 0.0185
GLY 94CYS 95 -0.0146
CYS 95THR 96 -0.0179
THR 96LEU 97 0.0207
LEU 97ASN 98 -0.0029

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.