CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_closed_cutoff10_ca  ***

CA strain for 2604200934113787487

---  normal mode 15  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.1627
GLN 2ILE 3 -0.2098
ILE 3THR 4 0.0039
THR 4LEU 5 -0.1955
LEU 5TRP 6 0.1163
TRP 6GLN 7 -0.0015
GLN 7ARG 8 0.2267
ARG 8PRO 9 0.0820
PRO 9LEU 10 -0.0512
LEU 10VAL 11 -0.1444
VAL 11THR 12 -0.0006
THR 12ILE 13 0.0454
ILE 13LYS 14 -0.0447
LYS 14ILE 15 -0.1722
ILE 15GLY 16 0.1353
GLY 16GLY 17 -0.2423
GLY 17GLN 18 0.1581
GLN 18LEU 19 0.0274
LEU 19LYS 20 -0.1188
LYS 20GLU 21 0.1025
GLU 21ALA 22 0.0150
ALA 22LEU 23 -0.0117
LEU 23LEU 24 -0.0587
LEU 24ASP 25 -0.0362
ASP 25THR 26 0.0269
THR 26GLY 27 -0.0481
GLY 27ALA 28 0.1189
ALA 28ASP 29 0.0456
ASP 29ASP 30 0.0709
ASP 30THR 31 -0.0455
THR 31VAL 32 0.0696
VAL 32LEU 33 0.0225
LEU 33GLU 34 -0.0343
GLU 34GLU 35 -0.0472
GLU 35MET 36 0.0398
MET 36SER 37 0.1165
SER 37LEU 38 -0.0531
LEU 38PRO 39 0.0086
PRO 39GLY 40 -0.0723
GLY 40ARG 41 -0.0653
ARG 41TRP 42 0.0149
TRP 42LYS 43 -0.1738
LYS 43PRO 44 0.0030
PRO 44LYS 45 0.0100
LYS 45MET 46 -0.0956
MET 46ILE 47 0.2210
ILE 47GLY 48 -0.0451
GLY 48GLY 49 0.1716
GLY 49ILE 50 -0.0260
ILE 50GLY 51 -0.0003
GLY 51GLY 52 -0.0821
GLY 52PHE 53 -0.0176
PHE 53ILE 54 0.0279
ILE 54LYS 55 -0.0644
LYS 55VAL 56 0.0445
VAL 56ARG 57 -0.0351
ARG 57GLN 58 0.0096
GLN 58TYR 59 0.0186
TYR 59ASP 60 0.0407
ASP 60GLN 61 -0.0354
GLN 61ILE 62 0.1442
ILE 62LEU 63 -0.1277
LEU 63ILE 64 -0.0079
ILE 64GLU 65 0.0322
GLU 65ILE 66 -0.0511
ILE 66CYS 67 0.0378
CYS 67GLY 68 -0.0159
GLY 68HIS 69 -0.0009
HIS 69LYS 70 -0.0156
LYS 70ALA 71 -0.0042
ALA 71ILE 72 0.0138
ILE 72GLY 73 0.0592
GLY 73THR 74 0.0236
THR 74VAL 75 -0.0652
VAL 75LEU 76 0.0663
LEU 76VAL 77 0.0959
VAL 77GLY 78 0.0199
GLY 78PRO 79 0.0421
PRO 79THR 80 0.0647
THR 80PRO 81 -0.0070
PRO 81VAL 82 0.0565
VAL 82ASN 83 -0.0437
ASN 83ILE 84 -0.0781
ILE 84ILE 85 0.0137
ILE 85GLY 86 -0.0141
GLY 86ARG 87 0.0037
ARG 87ASN 88 -0.0595
ASN 88LEU 89 -0.0000
LEU 89LEU 90 -0.0424
LEU 90THR 91 -0.0156
THR 91GLN 92 -0.0670
GLN 92ILE 93 0.0037
ILE 93GLY 94 -0.1020
GLY 94CYS 95 0.0712
CYS 95THR 96 0.0899
THR 96LEU 97 -0.3014
LEU 97ASN 98 0.1938

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.