CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  hiv1_closed_cutoff10_ca  ***

CA distance fluctuations for 2604200934113787487

---  normal mode 15  ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok
largest increasereflargest decrease
GLY 94 0.27 PRO 1 -0.50 GLN 7
GLY 48 0.28 GLN 2 -0.26 GLN 7
VAL 11 0.40 ILE 3 -0.37 THR 26
VAL 11 0.37 THR 4 -0.69 THR 26
LEU 97 0.54 LEU 5 -0.30 GLY 27
LEU 97 0.46 TRP 6 -0.30 PRO 1
GLY 48 0.50 GLN 7 -0.50 PRO 1
GLY 48 0.47 ARG 8 -0.37 PRO 1
GLY 48 0.42 PRO 9 -0.47 PRO 1
GLY 48 0.33 LEU 10 -0.47 PRO 1
ILE 3 0.40 VAL 11 -0.33 MET 36
THR 4 0.35 THR 12 -0.45 MET 36
ILE 3 0.25 ILE 13 -0.53 MET 36
ILE 3 0.20 LYS 14 -0.59 MET 36
ASN 83 0.26 ILE 15 -0.52 MET 36
LEU 33 0.51 GLY 16 -0.24 GLY 17
VAL 32 0.20 GLY 17 -0.34 MET 36
THR 4 0.20 GLN 18 -0.85 MET 36
THR 4 0.26 LEU 19 -0.76 MET 36
GLY 16 0.25 LYS 20 -0.68 MET 36
GLY 16 0.25 GLU 21 -0.42 MET 36
GLY 16 0.28 ALA 22 -0.31 MET 36
ILE 47 0.38 LEU 23 -0.27 PRO 1
ILE 47 0.44 LEU 24 -0.25 THR 4
ILE 47 0.64 ASP 25 -0.49 THR 4
GLY 48 0.75 THR 26 -0.69 THR 4
GLY 48 1.08 GLY 27 -0.67 THR 4
ILE 47 0.99 ALA 28 -0.46 THR 4
MET 46 0.96 ASP 29 -0.41 THR 4
LYS 45 0.69 ASP 30 -0.37 GLY 49
LYS 45 0.40 THR 31 -0.39 GLY 49
GLY 16 0.44 VAL 32 -0.62 GLY 49
GLY 16 0.51 LEU 33 -0.50 GLY 49
GLY 16 0.33 GLU 34 -0.41 GLY 49
ARG 41 0.17 GLU 35 -0.54 LEU 19
ARG 41 0.21 MET 36 -0.85 GLN 18
ARG 41 0.25 SER 37 -0.69 GLN 18
VAL 32 0.16 LEU 38 -0.36 GLN 18
ASP 60 0.22 PRO 39 -0.28 GLN 18
ASP 60 0.14 GLY 40 -0.27 GLY 49
SER 37 0.25 ARG 41 -0.25 GLY 49
ASP 29 0.23 TRP 42 -0.29 GLY 49
ASP 29 0.38 LYS 43 -0.29 GLY 49
ASP 29 0.61 PRO 44 -0.27 GLN 18
ASP 29 0.88 LYS 45 -0.21 LYS 43
ASP 29 0.96 MET 46 -0.15 LYS 43
GLY 27 1.00 ILE 47 -0.30 GLN 58
GLY 27 1.08 GLY 48 -0.24 GLN 58
GLY 27 0.69 GLY 49 -0.62 VAL 32
GLN 7 0.47 ILE 50 -0.40 VAL 32
GLY 27 0.45 GLY 51 -0.20 VAL 32
GLY 27 0.61 GLY 52 -0.18 LEU 76
GLY 27 0.80 PHE 53 -0.12 GLN 58
GLY 27 0.72 ILE 54 -0.15 GLY 49
ASP 29 0.61 LYS 55 -0.22 GLN 18
ASP 29 0.52 VAL 56 -0.37 GLY 49
ASP 29 0.37 ARG 57 -0.35 GLY 49
ASP 29 0.32 GLN 58 -0.44 GLY 49
ASP 30 0.20 TYR 59 -0.37 GLY 49
PRO 39 0.22 ASP 60 -0.36 GLY 49
GLY 17 0.16 GLN 61 -0.29 GLY 49
GLY 17 0.16 ILE 62 -0.29 GLY 49
GLY 17 0.12 LEU 63 -0.30 MET 36
ILE 3 0.12 ILE 64 -0.40 MET 36
ILE 3 0.17 GLU 65 -0.39 MET 36
ILE 3 0.22 ILE 66 -0.36 MET 36
ILE 3 0.39 CYS 67 -0.34 MET 36
ILE 3 0.31 GLY 68 -0.35 MET 36
PRO 1 0.22 HIS 69 -0.30 MET 36
MET 46 0.16 LYS 70 -0.31 MET 36
MET 46 0.21 ALA 71 -0.25 MET 36
LYS 45 0.18 ILE 72 -0.20 MET 36
LYS 45 0.24 GLY 73 -0.27 GLY 49
LYS 45 0.25 THR 74 -0.37 GLY 49
GLY 16 0.36 VAL 75 -0.44 GLY 49
GLY 16 0.34 LEU 76 -0.57 GLY 49
GLY 16 0.22 VAL 77 -0.46 GLY 49
GLY 27 0.30 GLY 78 -0.43 GLY 49
GLY 27 0.30 PRO 79 -0.39 GLY 49
GLY 16 0.28 THR 80 -0.56 GLY 49
GLY 16 0.31 PRO 81 -0.44 GLY 49
GLY 16 0.38 VAL 82 -0.34 GLY 49
GLY 16 0.46 ASN 83 -0.34 GLY 49
MET 46 0.35 ILE 84 -0.23 GLY 49
MET 46 0.39 ILE 85 -0.18 THR 4
MET 46 0.58 GLY 86 -0.32 THR 4
MET 46 0.62 ARG 87 -0.39 THR 4
LYS 45 0.54 ASN 88 -0.29 THR 4
MET 46 0.38 LEU 89 -0.20 THR 4
MET 46 0.43 LEU 90 -0.26 THR 4
MET 46 0.44 THR 91 -0.29 THR 4
MET 46 0.34 GLN 92 -0.18 MET 36
MET 46 0.32 ILE 93 -0.22 MET 36
MET 46 0.36 GLY 94 -0.18 MET 36
MET 46 0.42 CYS 95 -0.29 THR 4
GLY 48 0.49 THR 96 -0.38 THR 4
LEU 5 0.54 LEU 97 -0.36 THR 4
GLY 48 0.48 ASN 98 -0.46 THR 4

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.