Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.

STDOUT:

CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 2607020426561873267.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 2607020426561873267.atom to be opened.

 Openam> File opened: 2607020426561873267.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =   5308
            First residue number     =      1
            Last  residue number     =   1327
            Number of atoms found    =  40840
            Mean number per residue  =      7.7

 Pdbmat> Coordinate statistics: 
 =   242.320703 +/-    29.633453 From:   166.439000 To:   323.318000
 =   243.037248 +/-    29.789911 From:   160.172000 To:   325.203000
 =   279.313377 +/-    49.297280 From:   154.812000 To:   382.338000
 Pdbmat> Masses are all set to one.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is   1.3808 % Filled.
 Pdbmat>     14680576  non-zero elements.
 Pdbmat>      1604229 atom-atom interactions.

 Pdbmat> Number per atom=     78.56 +/-     24.78
         Maximum number =    132
         Minimum number =      8

 Pdbmat> Matrix trace   = 3.208458E+07
 Pdbmat> Larger element =  520.047    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 2607020426561873267.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =        100
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 2607020426561873267.atom to be opened.

 Openam> file on opening on unit     11:
 2607020426561873267.atom                                                                                                        

 Blocpdb> Coordinate file in PDB format.

 Blocpdb> 40840 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>   100 residue(s) per block.
 Blocpdb>  5308 residues.
 Blocpdb>   714 atoms in block      1
 Block first atom:      1
 Blocpdb>   777 atoms in block      2
 Block first atom:    715
 Blocpdb>   770 atoms in block      3
 Block first atom:   1492
 Blocpdb>   764 atoms in block      4
 Block first atom:   2262
 Blocpdb>   730 atoms in block      5
 Block first atom:   3026
 Blocpdb>   733 atoms in block      6
 Block first atom:   3756
 Blocpdb>   741 atoms in block      7
 Block first atom:   4489
 Blocpdb>   791 atoms in block      8
 Block first atom:   5230
 Blocpdb>   800 atoms in block      9
 Block first atom:   6021
 Blocpdb>   795 atoms in block     10
 Block first atom:   6821
 Blocpdb>   818 atoms in block     11
 Block first atom:   7616
 Blocpdb>   819 atoms in block     12
 Block first atom:   8434
 Blocpdb>   764 atoms in block     13
 Block first atom:   9253
 Blocpdb>   194 atoms in block     14
 Block first atom:  10017
 Blocpdb>   714 atoms in block     15
 Block first atom:  10211
 Blocpdb>   777 atoms in block     16
 Block first atom:  10925
 Blocpdb>   770 atoms in block     17
 Block first atom:  11702
 Blocpdb>   764 atoms in block     18
 Block first atom:  12472
 Blocpdb>   730 atoms in block     19
 Block first atom:  13236
 Blocpdb>   733 atoms in block     20
 Block first atom:  13966
 Blocpdb>   741 atoms in block     21
 Block first atom:  14699
 Blocpdb>   791 atoms in block     22
 Block first atom:  15440
 Blocpdb>   800 atoms in block     23
 Block first atom:  16231
 Blocpdb>   795 atoms in block     24
 Block first atom:  17031
 Blocpdb>   818 atoms in block     25
 Block first atom:  17826
 Blocpdb>   819 atoms in block     26
 Block first atom:  18644
 Blocpdb>   764 atoms in block     27
 Block first atom:  19463
 Blocpdb>   194 atoms in block     28
 Block first atom:  20227
 Blocpdb>   714 atoms in block     29
 Block first atom:  20421
 Blocpdb>   777 atoms in block     30
 Block first atom:  21135
 Blocpdb>   770 atoms in block     31
 Block first atom:  21912
 Blocpdb>   764 atoms in block     32
 Block first atom:  22682
 Blocpdb>   730 atoms in block     33
 Block first atom:  23446
 Blocpdb>   733 atoms in block     34
 Block first atom:  24176
 Blocpdb>   741 atoms in block     35
 Block first atom:  24909
 Blocpdb>   791 atoms in block     36
 Block first atom:  25650
 Blocpdb>   800 atoms in block     37
 Block first atom:  26441
 Blocpdb>   795 atoms in block     38
 Block first atom:  27241
 Blocpdb>   818 atoms in block     39
 Block first atom:  28036
 Blocpdb>   819 atoms in block     40
 Block first atom:  28854
 Blocpdb>   764 atoms in block     41
 Block first atom:  29673
 Blocpdb>   194 atoms in block     42
 Block first atom:  30437
 Blocpdb>   714 atoms in block     43
 Block first atom:  30631
 Blocpdb>   777 atoms in block     44
 Block first atom:  31345
 Blocpdb>   770 atoms in block     45
 Block first atom:  32122
 Blocpdb>   764 atoms in block     46
 Block first atom:  32892
 Blocpdb>   730 atoms in block     47
 Block first atom:  33656
 Blocpdb>   733 atoms in block     48
 Block first atom:  34386
 Blocpdb>   741 atoms in block     49
 Block first atom:  35119
 Blocpdb>   791 atoms in block     50
 Block first atom:  35860
 Blocpdb>   800 atoms in block     51
 Block first atom:  36651
 Blocpdb>   795 atoms in block     52
 Block first atom:  37451
 Blocpdb>   818 atoms in block     53
 Block first atom:  38246
 Blocpdb>   819 atoms in block     54
 Block first atom:  39064
 Blocpdb>   764 atoms in block     55
 Block first atom:  39883
 Blocpdb>   194 atoms in block     56
 Block first atom:  40646

 Blocpdb>    56 blocks.

 Blocpdb> At most,    819 atoms in each of them.
 Blocpdb> At least,   194 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.
 Diagrtb> Memory allocation for RTB_to_modes.

%Diagrtb-Er> IIWKMX up to:     12173699 Maximum allowed is LIWORK=      5000000

%Diagrtb-Er> IRWKMX up to:    307068490 Maximum allowed is LRWORK=     32000000

%Diagrtb-Er> Not enough memory allowed for working arrays. Sorry.
 Lower the number of blocks, the sizes of the largest ones...
 Or recompile DIAGRTB with larger WORKing arrays.



STDERR:
STOP *Working arrays allocation error*

real	0m0.208s
user	0m0.196s
sys	0m0.012s

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.