Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.

STDOUT:

CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 2607020449471878025.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 2607020449471878025.atom to be opened.

 Openam> File opened: 2607020449471878025.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =   5308
            First residue number     =      1
            Last  residue number     =   1327
            Number of atoms found    =  40840
            Mean number per residue  =      7.7

 Pdbmat> Coordinate statistics: 
 =   242.320703 +/-    29.633453 From:   166.439000 To:   323.318000
 =   243.037248 +/-    29.789911 From:   160.172000 To:   325.203000
 =   279.313377 +/-    49.297280 From:   154.812000 To:   382.338000
 Pdbmat> Masses are all set to one.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is   1.3808 % Filled.
 Pdbmat>     14680576  non-zero elements.
 Pdbmat>      1604229 atom-atom interactions.

 Pdbmat> Number per atom=     78.56 +/-     24.78
         Maximum number =    132
         Minimum number =      8

 Pdbmat> Matrix trace   = 3.208458E+07
 Pdbmat> Larger element =  520.047    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 2607020449471878025.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =         30
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 2607020449471878025.atom to be opened.

 Openam> file on opening on unit     11:
 2607020449471878025.atom                                                                                                        

 Blocpdb> Coordinate file in PDB format.

 Blocpdb> 40840 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>    30 residue(s) per block.
 Blocpdb>  5308 residues.
 Blocpdb>   202 atoms in block      1
 Block first atom:      1
 Blocpdb>   213 atoms in block      2
 Block first atom:    203
 Blocpdb>   214 atoms in block      3
 Block first atom:    416
 Blocpdb>   234 atoms in block      4
 Block first atom:    630
 Blocpdb>   234 atoms in block      5
 Block first atom:    864
 Blocpdb>   231 atoms in block      6
 Block first atom:   1098
 Blocpdb>   235 atoms in block      7
 Block first atom:   1329
 Blocpdb>   230 atoms in block      8
 Block first atom:   1564
 Blocpdb>   235 atoms in block      9
 Block first atom:   1794
 Blocpdb>   233 atoms in block     10
 Block first atom:   2029
 Blocpdb>   226 atoms in block     11
 Block first atom:   2262
 Blocpdb>   246 atoms in block     12
 Block first atom:   2488
 Blocpdb>   213 atoms in block     13
 Block first atom:   2734
 Blocpdb>   233 atoms in block     14
 Block first atom:   2947
 Blocpdb>   222 atoms in block     15
 Block first atom:   3180
 Blocpdb>   215 atoms in block     16
 Block first atom:   3402
 Blocpdb>   212 atoms in block     17
 Block first atom:   3617
 Blocpdb>   228 atoms in block     18
 Block first atom:   3829
 Blocpdb>   215 atoms in block     19
 Block first atom:   4057
 Blocpdb>   217 atoms in block     20
 Block first atom:   4272
 Blocpdb>   222 atoms in block     21
 Block first atom:   4489
 Blocpdb>   230 atoms in block     22
 Block first atom:   4711
 Blocpdb>   224 atoms in block     23
 Block first atom:   4941
 Blocpdb>   217 atoms in block     24
 Block first atom:   5165
 Blocpdb>   258 atoms in block     25
 Block first atom:   5382
 Blocpdb>   232 atoms in block     26
 Block first atom:   5640
 Blocpdb>   217 atoms in block     27
 Block first atom:   5872
 Blocpdb>   234 atoms in block     28
 Block first atom:   6089
 Blocpdb>   254 atoms in block     29
 Block first atom:   6323
 Blocpdb>   244 atoms in block     30
 Block first atom:   6577
 Blocpdb>   240 atoms in block     31
 Block first atom:   6821
 Blocpdb>   240 atoms in block     32
 Block first atom:   7061
 Blocpdb>   230 atoms in block     33
 Block first atom:   7301
 Blocpdb>   245 atoms in block     34
 Block first atom:   7531
 Blocpdb>   236 atoms in block     35
 Block first atom:   7776
 Blocpdb>   251 atoms in block     36
 Block first atom:   8012
 Blocpdb>   246 atoms in block     37
 Block first atom:   8263
 Blocpdb>   252 atoms in block     38
 Block first atom:   8509
 Blocpdb>   243 atoms in block     39
 Block first atom:   8761
 Blocpdb>   249 atoms in block     40
 Block first atom:   9004
 Blocpdb>   235 atoms in block     41
 Block first atom:   9253
 Blocpdb>   228 atoms in block     42
 Block first atom:   9488
 Blocpdb>   232 atoms in block     43
 Block first atom:   9716
 Blocpdb>   211 atoms in block     44
 Block first atom:   9948
 Blocpdb>    52 atoms in block     45
 Block first atom:  10159
 Blocpdb>   202 atoms in block     46
 Block first atom:  10211
 Blocpdb>   213 atoms in block     47
 Block first atom:  10413
 Blocpdb>   214 atoms in block     48
 Block first atom:  10626
 Blocpdb>   234 atoms in block     49
 Block first atom:  10840
 Blocpdb>   234 atoms in block     50
 Block first atom:  11074
 Blocpdb>   231 atoms in block     51
 Block first atom:  11308
 Blocpdb>   235 atoms in block     52
 Block first atom:  11539
 Blocpdb>   230 atoms in block     53
 Block first atom:  11774
 Blocpdb>   235 atoms in block     54
 Block first atom:  12004
 Blocpdb>   233 atoms in block     55
 Block first atom:  12239
 Blocpdb>   226 atoms in block     56
 Block first atom:  12472
 Blocpdb>   246 atoms in block     57
 Block first atom:  12698
 Blocpdb>   213 atoms in block     58
 Block first atom:  12944
 Blocpdb>   233 atoms in block     59
 Block first atom:  13157
 Blocpdb>   222 atoms in block     60
 Block first atom:  13390
 Blocpdb>   215 atoms in block     61
 Block first atom:  13612
 Blocpdb>   212 atoms in block     62
 Block first atom:  13827
 Blocpdb>   228 atoms in block     63
 Block first atom:  14039
 Blocpdb>   215 atoms in block     64
 Block first atom:  14267
 Blocpdb>   217 atoms in block     65
 Block first atom:  14482
 Blocpdb>   222 atoms in block     66
 Block first atom:  14699
 Blocpdb>   230 atoms in block     67
 Block first atom:  14921
 Blocpdb>   224 atoms in block     68
 Block first atom:  15151
 Blocpdb>   217 atoms in block     69
 Block first atom:  15375
 Blocpdb>   258 atoms in block     70
 Block first atom:  15592
 Blocpdb>   232 atoms in block     71
 Block first atom:  15850
 Blocpdb>   217 atoms in block     72
 Block first atom:  16082
 Blocpdb>   234 atoms in block     73
 Block first atom:  16299
 Blocpdb>   254 atoms in block     74
 Block first atom:  16533
 Blocpdb>   244 atoms in block     75
 Block first atom:  16787
 Blocpdb>   240 atoms in block     76
 Block first atom:  17031
 Blocpdb>   240 atoms in block     77
 Block first atom:  17271
 Blocpdb>   230 atoms in block     78
 Block first atom:  17511
 Blocpdb>   245 atoms in block     79
 Block first atom:  17741
 Blocpdb>   236 atoms in block     80
 Block first atom:  17986
 Blocpdb>   251 atoms in block     81
 Block first atom:  18222
 Blocpdb>   246 atoms in block     82
 Block first atom:  18473
 Blocpdb>   252 atoms in block     83
 Block first atom:  18719
 Blocpdb>   243 atoms in block     84
 Block first atom:  18971
 Blocpdb>   249 atoms in block     85
 Block first atom:  19214
 Blocpdb>   235 atoms in block     86
 Block first atom:  19463
 Blocpdb>   228 atoms in block     87
 Block first atom:  19698
 Blocpdb>   232 atoms in block     88
 Block first atom:  19926
 Blocpdb>   211 atoms in block     89
 Block first atom:  20158
 Blocpdb>    52 atoms in block     90
 Block first atom:  20369
 Blocpdb>   202 atoms in block     91
 Block first atom:  20421
 Blocpdb>   213 atoms in block     92
 Block first atom:  20623
 Blocpdb>   214 atoms in block     93
 Block first atom:  20836
 Blocpdb>   234 atoms in block     94
 Block first atom:  21050
 Blocpdb>   234 atoms in block     95
 Block first atom:  21284
 Blocpdb>   231 atoms in block     96
 Block first atom:  21518
 Blocpdb>   235 atoms in block     97
 Block first atom:  21749
 Blocpdb>   230 atoms in block     98
 Block first atom:  21984
 Blocpdb>   235 atoms in block     99
 Block first atom:  22214
 Blocpdb>   233 atoms in block    100
 Block first atom:  22449
 Blocpdb>   226 atoms in block    101
 Block first atom:  22682
 Blocpdb>   246 atoms in block    102
 Block first atom:  22908
 Blocpdb>   213 atoms in block    103
 Block first atom:  23154
 Blocpdb>   233 atoms in block    104
 Block first atom:  23367
 Blocpdb>   222 atoms in block    105
 Block first atom:  23600
 Blocpdb>   215 atoms in block    106
 Block first atom:  23822
 Blocpdb>   212 atoms in block    107
 Block first atom:  24037
 Blocpdb>   228 atoms in block    108
 Block first atom:  24249
 Blocpdb>   215 atoms in block    109
 Block first atom:  24477
 Blocpdb>   217 atoms in block    110
 Block first atom:  24692
 Blocpdb>   222 atoms in block    111
 Block first atom:  24909
 Blocpdb>   230 atoms in block    112
 Block first atom:  25131
 Blocpdb>   224 atoms in block    113
 Block first atom:  25361
 Blocpdb>   217 atoms in block    114
 Block first atom:  25585
 Blocpdb>   258 atoms in block    115
 Block first atom:  25802
 Blocpdb>   232 atoms in block    116
 Block first atom:  26060
 Blocpdb>   217 atoms in block    117
 Block first atom:  26292
 Blocpdb>   234 atoms in block    118
 Block first atom:  26509
 Blocpdb>   254 atoms in block    119
 Block first atom:  26743
 Blocpdb>   244 atoms in block    120
 Block first atom:  26997
 Blocpdb>   240 atoms in block    121
 Block first atom:  27241
 Blocpdb>   240 atoms in block    122
 Block first atom:  27481
 Blocpdb>   230 atoms in block    123
 Block first atom:  27721
 Blocpdb>   245 atoms in block    124
 Block first atom:  27951
 Blocpdb>   236 atoms in block    125
 Block first atom:  28196
 Blocpdb>   251 atoms in block    126
 Block first atom:  28432
 Blocpdb>   246 atoms in block    127
 Block first atom:  28683
 Blocpdb>   252 atoms in block    128
 Block first atom:  28929
 Blocpdb>   243 atoms in block    129
 Block first atom:  29181
 Blocpdb>   249 atoms in block    130
 Block first atom:  29424
 Blocpdb>   235 atoms in block    131
 Block first atom:  29673
 Blocpdb>   228 atoms in block    132
 Block first atom:  29908
 Blocpdb>   232 atoms in block    133
 Block first atom:  30136
 Blocpdb>   211 atoms in block    134
 Block first atom:  30368
 Blocpdb>    52 atoms in block    135
 Block first atom:  30579
 Blocpdb>   202 atoms in block    136
 Block first atom:  30631
 Blocpdb>   213 atoms in block    137
 Block first atom:  30833
 Blocpdb>   214 atoms in block    138
 Block first atom:  31046
 Blocpdb>   234 atoms in block    139
 Block first atom:  31260
 Blocpdb>   234 atoms in block    140
 Block first atom:  31494
 Blocpdb>   231 atoms in block    141
 Block first atom:  31728
 Blocpdb>   235 atoms in block    142
 Block first atom:  31959
 Blocpdb>   230 atoms in block    143
 Block first atom:  32194
 Blocpdb>   235 atoms in block    144
 Block first atom:  32424
 Blocpdb>   233 atoms in block    145
 Block first atom:  32659
 Blocpdb>   226 atoms in block    146
 Block first atom:  32892
 Blocpdb>   246 atoms in block    147
 Block first atom:  33118
 Blocpdb>   213 atoms in block    148
 Block first atom:  33364
 Blocpdb>   233 atoms in block    149
 Block first atom:  33577
 Blocpdb>   222 atoms in block    150
 Block first atom:  33810
 Blocpdb>   215 atoms in block    151
 Block first atom:  34032
 Blocpdb>   212 atoms in block    152
 Block first atom:  34247
 Blocpdb>   228 atoms in block    153
 Block first atom:  34459
 Blocpdb>   215 atoms in block    154
 Block first atom:  34687
 Blocpdb>   217 atoms in block    155
 Block first atom:  34902
 Blocpdb>   222 atoms in block    156
 Block first atom:  35119
 Blocpdb>   230 atoms in block    157
 Block first atom:  35341
 Blocpdb>   224 atoms in block    158
 Block first atom:  35571
 Blocpdb>   217 atoms in block    159
 Block first atom:  35795
 Blocpdb>   258 atoms in block    160
 Block first atom:  36012
 Blocpdb>   232 atoms in block    161
 Block first atom:  36270
 Blocpdb>   217 atoms in block    162
 Block first atom:  36502
 Blocpdb>   234 atoms in block    163
 Block first atom:  36719
 Blocpdb>   254 atoms in block    164
 Block first atom:  36953
 Blocpdb>   244 atoms in block    165
 Block first atom:  37207
 Blocpdb>   240 atoms in block    166
 Block first atom:  37451
 Blocpdb>   240 atoms in block    167
 Block first atom:  37691
 Blocpdb>   230 atoms in block    168
 Block first atom:  37931
 Blocpdb>   245 atoms in block    169
 Block first atom:  38161
 Blocpdb>   236 atoms in block    170
 Block first atom:  38406
 Blocpdb>   251 atoms in block    171
 Block first atom:  38642
 Blocpdb>   246 atoms in block    172
 Block first atom:  38893
 Blocpdb>   252 atoms in block    173
 Block first atom:  39139
 Blocpdb>   243 atoms in block    174
 Block first atom:  39391
 Blocpdb>   249 atoms in block    175
 Block first atom:  39634
 Blocpdb>   235 atoms in block    176
 Block first atom:  39883
 Blocpdb>   228 atoms in block    177
 Block first atom:  40118
 Blocpdb>   232 atoms in block    178
 Block first atom:  40346
 Blocpdb>   211 atoms in block    179
 Block first atom:  40578
 Blocpdb>    52 atoms in block    180
 Block first atom:  40788

 Blocpdb>   180 blocks.

 Blocpdb> At most,    258 atoms in each of them.
 Blocpdb> At least,    52 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.
 Diagrtb> Memory allocation for RTB_to_modes.

%Diagrtb-Er> IRWKMX up to:     95429557 Maximum allowed is LRWORK=     32000000

%Diagrtb-Er> Not enough memory allowed for working arrays. Sorry.
 Lower the number of blocks, the sizes of the largest ones...
 Or recompile DIAGRTB with larger WORKing arrays.



STDERR:
STOP *Working arrays allocation error*

real	0m0.227s
user	0m0.211s
sys	0m0.016s

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.