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***  MD snap  ***

Normal Mode Analysis for ID 2607022151012161870

Conformational change expected to be analysed

%Projmod-Wn> Eigenvector 86 Norm= 1.0001

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0080 0.003 -173.2667
mode 8 1.50 0.0096 0.006 153.9696
mode 9 1.76 0.0075 0.006 -31.8104
mode 10 2.24 0.5714 0.007 79.3755
mode 11 2.40 0.6221 0.010 -164.9883
mode 12 2.58 0.6221 0.014 -184.3698
mode 13 3.31 0.2854 0.016 115.9759
mode 14 3.51 0.2277 0.017 113.8368
mode 15 3.66 0.4457 0.033 371.1958
mode 16 3.80 0.4421 0.037 -175.7972
mode 17 3.83 0.3656 0.048 -300.1498
mode 18 3.90 0.0822 0.064 377.6647
mode 19 3.99 0.3502 0.127 733.6741
mode 20 4.00 0.1265 0.127 14.1564
mode 21 4.28 0.3490 0.130 156.4157
mode 22 4.43 0.3244 0.133 -178.8142
mode 23 4.51 0.2981 0.137 149.8774
mode 24 4.58 0.4360 0.147 -299.3070
mode 25 4.69 0.3906 0.147 -53.8205
mode 26 4.71 0.2650 0.149 -129.5149
mode 27 4.76 0.3881 0.152 177.8166
mode 28 4.89 0.4619 0.162 292.8941
mode 29 4.99 0.2091 0.162 -20.4428
mode 30 5.03 0.3717 0.166 157.5027
mode 31 5.09 0.1899 0.169 165.2204
mode 32 5.16 0.3809 0.170 -102.7632
mode 33 5.23 0.3216 0.177 -232.1631
mode 34 5.29 0.4070 0.188 312.6297
mode 35 5.32 0.3110 0.198 -291.3811
mode 36 5.36 0.2827 0.204 -237.4621
mode 37 5.53 0.2449 0.223 -399.4659
mode 38 5.61 0.2573 0.224 112.7475
mode 39 5.71 0.3096 0.224 60.9847
mode 40 5.73 0.2361 0.227 128.6761
mode 41 5.86 0.2418 0.231 195.1293
mode 42 5.93 0.4942 0.290 707.9402
mode 43 5.95 0.3849 0.292 138.7137
mode 44 5.99 0.3342 0.296 -177.1179
mode 45 6.02 0.1040 0.296 35.9968
mode 46 6.10 0.4633 0.301 204.5430
mode 47 6.16 0.3310 0.302 106.2649
mode 48 6.22 0.1180 0.307 -196.7646
mode 49 6.31 0.3690 0.324 386.4543
mode 50 6.35 0.4660 0.328 164.8694
mode 51 6.39 0.4780 0.343 369.2207
mode 52 6.50 0.3416 0.343 -20.7422
mode 53 6.53 0.4193 0.343 -42.8012
mode 54 6.55 0.2297 0.343 -19.5101
mode 55 6.71 0.3116 0.347 -151.6197
mode 56 6.73 0.3696 0.370 -454.2136
mode 57 6.82 0.4014 0.370 -14.7536
mode 58 6.94 0.3460 0.371 -97.1118
mode 59 6.96 0.2978 0.376 182.9634
mode 60 7.04 0.5313 0.417 597.2370
mode 61 7.06 0.4032 0.438 -423.1190
mode 62 7.10 0.2638 0.438 36.7723
mode 63 7.14 0.3344 0.446 255.2097
mode 64 7.21 0.2713 0.470 -452.5921
mode 65 7.25 0.3028 0.490 412.4251
mode 66 7.29 0.2206 0.510 416.9487
mode 67 7.35 0.3292 0.544 -544.7646
mode 68 7.41 0.3980 0.617 -782.5292
mode 69 7.45 0.3680 0.619 -161.6418
mode 70 7.50 0.3961 0.624 202.3227
mode 71 7.55 0.3674 0.628 -186.1627
mode 72 7.58 0.4787 0.630 -134.6811
mode 73 7.63 0.3809 0.637 222.9760
mode 74 7.69 0.3809 0.667 511.1796
mode 75 7.72 0.4234 0.669 122.6500
mode 76 7.76 0.2464 0.698 -499.1960
mode 77 7.80 0.4971 0.726 483.7435
mode 78 7.92 0.3701 0.726 67.3269
mode 79 7.94 0.3674 0.727 71.2170
mode 80 8.00 0.4942 0.727 75.8610
mode 81 8.09 0.4842 0.733 -241.8044
mode 82 8.13 0.3137 0.771 565.6660
mode 83 8.19 0.4552 0.771 40.3411
mode 84 8.21 0.3591 0.774 151.8685
mode 85 8.27 0.2911 0.776 95.0128
mode 86 8.32 0.3535 0.781 -222.9458
mode 87 8.38 0.4096 0.782 120.8817
mode 88 8.43 0.3489 0.791 -277.7185
mode 89 8.45 0.4414 0.820 -488.8190
mode 90 8.49 0.2825 0.820 -6.0165
mode 91 8.57 0.3844 0.822 142.1174
mode 92 8.65 0.4856 0.822 -8.0361
mode 93 8.71 0.3754 0.836 -347.4038
mode 94 8.72 0.4060 0.847 -309.8475
mode 95 8.77 0.3812 0.848 -55.3628
mode 96 8.84 0.4002 0.852 203.0990
mode 97 8.91 0.4577 0.858 -203.9154
mode 98 8.97 0.4376 0.861 -190.1064
mode 99 9.00 0.3856 0.861 39.7857
mode 100 9.05 0.4564 0.862 79.0037
mode 101 9.09 0.2118 0.862 -39.5253
mode 102 9.14 0.4587 0.863 60.3073
mode 103 9.16 0.5224 0.863 -30.0679
mode 104 9.21 0.3614 0.867 185.6060
mode 105 9.26 0.4371 0.868 -33.5124
mode 106 9.30 0.4209 0.870 138.9020

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.