CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  Apo AMPK  ***

<R2> analysis for 260711175133601569

---  normal mode 35  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0829
ARG 100.0429
VAL 110.0420
LYS 120.0439
ILE 130.0415
GLY 140.0665
HIS 150.0674
TYR 160.0423
ILE 170.0310
LEU 180.0143
GLY 190.0111
ASP 200.0203
THR 210.0218
LEU 220.0259
GLY 230.0234
VAL 240.0241
GLY 250.0149
THR 260.0130
PHE 270.0164
GLY 280.0160
LYS 290.0161
VAL 300.0168
LYS 310.0156
VAL 320.0215
GLY 330.0231
LYS 340.0366
HIS 350.0571
GLU 360.0591
LEU 370.0826
THR 380.0829
GLY 390.0621
HIS 400.0608
LYS 410.0447
VAL 420.0330
ALA 430.0215
VAL 440.0166
LYS 450.0149
ILE 460.0128
LEU 470.0150
ASN 480.0172
ARG 490.0202
GLN 500.0219
LYS 510.0206
ILE 520.0207
ARG 530.0257
SER 540.0274
LEU 550.0263
ASP 560.0256
VAL 570.0202
VAL 580.0212
GLY 590.0170
LYS 600.0142
ILE 610.0133
ARG 620.0131
ARG 630.0101
GLU 640.0099
ILE 650.0104
GLN 660.0093
ASN 670.0079
LEU 680.0081
LYS 690.0086
LEU 700.0073
PHE 710.0065
ARG 720.0074
HIS 730.0057
PRO 740.0069
HIS 750.0045
ILE 760.0073
ILE 770.0098
LYS 780.0096
LEU 790.0146
TYR 800.0143
GLN 810.0119
VAL 820.0120
ILE 830.0129
SER 840.0146
THR 850.0181
PRO 860.0208
SER 870.0196
ASP 880.0140
ILE 890.0137
PHE 900.0109
MET 910.0125
VAL 920.0153
MET 930.0183
GLU 940.0236
TYR 950.0287
VAL 960.0240
SER 970.0137
GLY 980.0146
GLY 990.0126
GLU 1000.0081
LEU 1010.0072
PHE 1020.0077
ASP 1030.0099
TYR 1040.0088
ILE 1050.0061
CYS 1060.0077
LYS 1070.0107
ASN 1080.0102
GLY 1090.0074
ARG 1100.0063
LEU 1110.0080
ASP 1120.0099
GLU 1130.0106
LYS 1140.0119
GLU 1150.0092
SER 1160.0070
ARG 1170.0084
ARG 1180.0073
LEU 1190.0055
PHE 1200.0053
GLN 1210.0064
GLN 1220.0055
ILE 1230.0039
LEU 1240.0049
SER 1250.0052
GLY 1260.0049
VAL 1270.0050
ASP 1280.0058
TYR 1290.0050
CYS 1300.0051
HIS 1310.0058
ARG 1320.0058
HIS 1330.0052
MET 1340.0053
VAL 1350.0051
VAL 1360.0054
HIS 1370.0053
ARG 1380.0058
ASP 1390.0066
LEU 1400.0055
LYS 1410.0055
PRO 1420.0047
GLU 1430.0063
ASN 1440.0051
VAL 1450.0066
LEU 1460.0073
LEU 1470.0075
ASP 1480.0095
ALA 1490.0106
HIS 1500.0069
MET 1510.0061
ASN 1520.0050
ALA 1530.0032
LYS 1540.0059
ILE 1550.0060
ALA 1560.0069
ASP 1570.0064
PHE 1580.0063
GLY 1590.0073
LEU 1600.0069
SER 1610.0061
ASN 1620.0063
MET 1630.0052
MET 1640.0053
SER 1650.0050
ASP 1660.0031
GLY 1670.0020
GLU 1680.0025
PHE 1690.0034
LEU 1700.0045
ARG 1710.0049
SER 1730.0061
CYS 1740.0069
GLY 1750.0072
SER 1760.0126
PRO 1770.0116
ASN 1780.0112
TYR 1790.0065
ALA 1800.0077
ALA 1810.0066
PRO 1820.0052
GLU 1830.0050
VAL 1840.0061
ILE 1850.0082
SER 1860.0063
GLY 1870.0063
ARG 1880.0047
LEU 1890.0042
TYR 1900.0039
ALA 1910.0037
GLY 1920.0049
PRO 1930.0058
GLU 1940.0055
VAL 1950.0056
ASP 1960.0060
ILE 1970.0056
TRP 1980.0057
SER 1990.0065
SER 2000.0057
GLY 2010.0056
VAL 2020.0060
ILE 2030.0059
LEU 2040.0062
TYR 2050.0064
ALA 2060.0048
LEU 2070.0060
LEU 2080.0068
CYS 2090.0060
GLY 2100.0048
THR 2110.0045
LEU 2120.0086
PRO 2130.0078
PHE 2140.0100
ASP 2150.0182
ASP 2160.0306
ASP 2170.0434
HIS 2180.0405
VAL 2190.0324
PRO 2200.0270
THR 2210.0259
LEU 2220.0209
PHE 2230.0147
LYS 2240.0157
LYS 2250.0164
ILE 2260.0097
CYS 2270.0080
ASP 2280.0108
GLY 2290.0082
ILE 2300.0105
PHE 2310.0102
TYR 2320.0097
THR 2330.0089
PRO 2340.0095
GLN 2350.0106
TYR 2360.0108
LEU 2370.0103
ASN 2380.0118
PRO 2390.0123
SER 2400.0121
VAL 2410.0105
ILE 2420.0099
SER 2430.0098
LEU 2440.0090
LEU 2450.0078
LYS 2460.0076
HIS 2470.0074
MET 2480.0061
LEU 2490.0062
GLN 2500.0059
VAL 2510.0052
ASP 2520.0049
PRO 2530.0045
MET 2540.0045
LYS 2550.0057
ARG 2560.0058
ALA 2570.0072
THR 2580.0071
ILE 2590.0067
LYS 2600.0082
ASP 2610.0091
ILE 2620.0085
ARG 2630.0096
GLU 2640.0116
HIS 2650.0117
GLU 2660.0139
TRP 2670.0123
PHE 2680.0109
LYS 2690.0131
GLN 2700.0144
ASP 2710.0148
LEU 2720.0129
PRO 2730.0133
LYS 2740.0136
TYR 2750.0119
LEU 2760.0094
PHE 2770.0086
PRO 2780.0076
GLU 2790.0096
ASP 2800.0112
ALA 3210.0084
VAL 3220.0091
ALA 3230.0083
TYR 3240.0069
HIS 3250.0084
LEU 3260.0083
ILE 3270.0081
ILE 3280.0075
ASP 3290.0067
ASN 3300.0069
ARG 3310.0065
ARG 3320.0052
ILE 3330.0059
MET 3340.0058
ASN 3350.0054
GLU 3360.0066
ALA 3370.0040
LYS 3380.0044
ASP 3390.0041
PHE 3400.0028
TYR 3410.0039
LEU 3420.0052
ALA 3430.0048
THR 3440.0047
SER 3450.0058
PRO 3460.0052
PRO 3470.0071
ASP 3480.0155
SER 3490.0085
PHE 3500.0059
LEU 3510.0102
ASP 3520.0097
ASP 3530.0119
HIS 3540.0068
HIS 3550.0041
LEU 3560.0034
THR 3570.0051
ARG 3580.0048
PRO 3590.0034
HIS 3600.0027
PRO 3610.0043
GLU 3620.0052
ARG 3630.0049
VAL 3640.0050
PRO 3650.0065
PHE 3660.0046
LEU 3670.0055
VAL 3680.0037
ALA 3690.0052
GLU 3700.0102
THR 3710.0082
PRO 3720.0107
ARG 3730.0107
ALA 3740.0165
ALA 3940.0032
LYS 3950.0032
TRP 3960.0030
HIS 3970.0036
LEU 3980.0038
GLY 3990.0050
ILE 4000.0090
ARG 4010.0109
SER 4020.0132
GLN 4030.0180
SER 4040.0160
ARG 4050.0146
PRO 4060.0109
ASN 4070.0076
ASP 4080.0070
ILE 4090.0066
MET 4100.0031
ALA 4110.0023
GLU 4120.0059
VAL 4130.0045
CYS 4140.0055
ARG 4150.0080
ALA 4160.0076
ILE 4170.0065
LYS 4180.0093
GLN 4190.0104
LEU 4200.0086
ASP 4210.0095
TYR 4220.0072
GLU 4230.0086
TRP 4240.0074
LYS 4250.0090
VAL 4260.0083
VAL 4270.0096
ASN 4280.0087
PRO 4290.0067
TYR 4300.0066
TYR 4310.0057
LEU 4320.0044
ARG 4330.0059
VAL 4340.0047
ARG 4350.0052
ARG 4360.0058
LYS 4370.0039
ASN 4380.0114
PRO 4390.0245
VAL 4400.0325
THR 4410.0307
SER 4420.0175
THR 4430.0151
PHE 4440.0089
SER 4450.0040
LYS 4460.0044
MET 4470.0041
SER 4480.0037
LEU 4490.0033
GLN 4500.0049
LEU 4510.0059
TYR 4520.0082
GLN 4530.0118
VAL 4540.0127
ASP 4550.0185
SER 4560.0226
ARG 4570.0213
THR 4580.0171
TYR 4590.0121
LEU 4600.0080
LEU 4610.0058
ASP 4620.0041
PHE 4630.0033
ARG 4640.0034
SER 4650.0034
ILE 4660.0062
ASP 4670.0068
ASP 4680.0078
GLU 4690.0050
ILE 4700.0119
LYS 2030.0202
SER 2040.0167
PRO 2050.0108
PRO 2060.0083
ILE 2070.0083
LEU 2080.0063
PRO 2090.0023
PRO 2100.0017
HIS 2110.0007
LEU 2120.0014
LEU 2130.0018
GLN 2140.0011
VAL 2150.0015
ILE 2160.0016
LEU 2170.0021
ASN 2180.0021
LYS 2190.0026
ASP 2200.0047
THR 2210.0054
ASN 2220.0036
ILE 2230.0024
SER 2240.0020
CYS 2250.0031
ASP 2260.0039
PRO 2270.0047
ALA 2280.0056
LEU 2290.0055
LEU 2300.0049
PRO 2310.0048
GLU 2320.0047
PRO 2330.0027
ASN 2340.0029
HIS 2350.0030
VAL 2360.0014
MET 2370.0012
LEU 2380.0015
ASN 2390.0023
HIS 2400.0023
LEU 2410.0025
TYR 2420.0027
ALA 2430.0024
LEU 2440.0021
SER 2450.0007
ILE 2460.0065
LYS 2470.0141
ASP 2480.0233
SER 2490.0186
VAL 2500.0098
MET 2510.0030
VAL 2520.0028
LEU 2530.0018
SER 2540.0025
ALA 2550.0022
THR 2560.0018
HIS 2570.0019
ARG 2580.0025
TYR 2590.0039
LYS 2600.0055
LYS 2610.0054
LYS 2620.0041
TYR 2630.0028
VAL 2640.0025
THR 2650.0020
THR 2660.0033
LEU 2670.0031
LEU 2680.0029
TYR 2690.0047
LYS 2700.0037
PRO 2710.0050
PRO 5280.0661
GLY 5290.0405
SER 5300.0179
HIS 5310.0075
THR 5320.0055
ILE 5330.0052
GLU 5340.0051
PHE 5350.0031
PHE 5360.0025
GLU 5370.0020
MET 5380.0006
CYS 5390.0008
ALA 5400.0037
ASN 5410.0044
LEU 5420.0042
ILE 5430.0062
LYS 5440.0087
ILE 5450.0093
LEU 5460.0084
ALA 5470.0111
GLN 5480.0164

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.