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***  Holo AMPK  ***

Normal Mode Analysis for ID 260711185133617066

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6277
mode 8 1.23 0.6752
mode 9 1.88 0.6997
mode 10 2.60 0.5587
mode 11 3.07 0.3511
mode 12 3.69 0.5751
mode 13 4.36 0.5851
mode 14 5.00 0.4645
mode 15 5.56 0.6602
mode 16 6.23 0.5026
mode 17 6.71 0.6556
mode 18 7.33 0.4822
mode 19 7.69 0.5550
mode 20 7.79 0.6621
mode 21 8.28 0.4524
mode 22 8.50 0.5263
mode 23 8.72 0.2513
mode 24 9.36 0.3607
mode 25 9.71 0.5010
mode 26 9.74 0.0494
mode 27 10.19 0.3849
mode 28 10.84 0.2027
mode 29 11.04 0.2603
mode 30 11.36 0.4272
mode 31 11.58 0.3709
mode 32 11.84 0.3923
mode 33 12.06 0.3483
mode 34 12.29 0.0703
mode 35 12.45 0.2613
mode 36 12.81 0.0419
mode 37 12.97 0.0242
mode 38 13.17 0.2966
mode 39 13.59 0.0955
mode 40 13.77 0.2280
mode 41 13.81 0.2930
mode 42 14.04 0.3540
mode 43 14.32 0.3103
mode 44 14.55 0.3426
mode 45 14.71 0.1640
mode 46 14.91 0.2840
mode 47 15.05 0.2327
mode 48 15.63 0.1119
mode 49 15.73 0.3143
mode 50 15.74 0.0924
mode 51 15.92 0.0817
mode 52 16.05 0.3609
mode 53 16.24 0.1857
mode 54 16.52 0.2023
mode 55 16.53 0.2315
mode 56 16.61 0.2580
mode 57 17.14 0.4048
mode 58 17.27 0.2634
mode 59 17.46 0.3672
mode 60 17.69 0.2927
mode 61 17.90 0.4391
mode 62 17.92 0.2475
mode 63 17.97 0.4229
mode 64 18.30 0.2878
mode 65 18.43 0.3741
mode 66 18.66 0.2232
mode 67 18.86 0.3111
mode 68 19.10 0.2858
mode 69 19.36 0.3727
mode 70 19.42 0.2735
mode 71 19.50 0.3237
mode 72 19.68 0.3281
mode 73 19.78 0.4254
mode 74 20.04 0.2436
mode 75 20.07 0.3196
mode 76 20.26 0.2354
mode 77 20.48 0.3878
mode 78 20.51 0.2234
mode 79 20.65 0.4756
mode 80 20.81 0.4041
mode 81 20.86 0.5156
mode 82 21.00 0.2683
mode 83 21.09 0.4290
mode 84 21.42 0.3366
mode 85 21.56 0.3501
mode 86 21.60 0.6107
mode 87 21.72 0.4682
mode 88 21.90 0.3973
mode 89 22.05 0.4793
mode 90 22.36 0.5184
mode 91 22.48 0.5259
mode 92 22.63 0.3529
mode 93 22.70 0.3828
mode 94 22.90 0.4797
mode 95 23.08 0.3497
mode 96 23.13 0.3962
mode 97 23.23 0.5327
mode 98 23.37 0.3974
mode 99 23.52 0.4407
mode 100 23.62 0.4602
mode 101 23.65 0.3880
mode 102 23.76 0.5109
mode 103 23.85 0.4528
mode 104 23.98 0.4471
mode 105 24.12 0.3836
mode 106 24.26 0.2567

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.