CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  MHC1  ***

<R2> analysis for 2607180828532135053

---  normal mode 104  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0555
MET 10.0138
SER 20.0076
THR 30.0040
ILE 40.0106
THR 50.0104
LYS 60.0090
ASP 70.0069
GLN 80.0102
ILE 90.0086
LEU 100.0062
GLU 110.0095
GLY 120.0088
VAL 130.0055
ALA 140.0107
ALA 150.0108
LEU 160.0036
SER 170.0057
VAL 180.0063
MET 190.0015
GLU 200.0016
ILE 210.0066
VAL 220.0044
GLU 230.0067
LEU 240.0109
ILE 250.0110
SER 260.0075
ALA 270.0192
MET 280.0146
GLU 290.0035
GLU 300.0130
LYS 310.0133
PHE 320.0109
GLY 330.0239
VAL 340.0299
SER 350.0251
ALA 360.0209
ALA 370.0152
ALA 380.0100
VAL 390.0253
ALA 400.0319
ALA 410.0075
GLY 420.0091
PRO 430.0186
ALA 440.0196
ALA 450.0096
ALA 460.0162
VAL 470.0182
GLU 480.0092
ALA 490.0209
ALA 500.0268
GLU 510.0168
GLU 520.0151
GLN 530.0138
THR 540.0135
GLU 550.0124
PHE 560.0041
ASP 570.0041
VAL 580.0039
VAL 590.0048
LEU 600.0074
ALA 610.0090
SER 620.0069
PHE 630.0044
GLY 640.0050
GLU 650.0048
ASN 660.0038
LYS 670.0011
VAL 680.0029
ALA 690.0023
VAL 700.0011
ILE 710.0028
LYS 720.0049
ALA 730.0032
VAL 740.0043
ARG 750.0056
GLY 760.0021
ALA 770.0076
THR 780.0102
GLY 790.0093
LEU 800.0134
GLY 810.0222
LEU 820.0197
LYS 830.0238
GLU 840.0215
ALA 850.0114
LYS 860.0081
ASP 870.0103
LEU 880.0102
VAL 890.0046
GLU 900.0041
SER 910.0083
ALA 920.0079
PRO 930.0080
ALA 940.0076
VAL 950.0071
LEU 960.0077
LYS 970.0064
GLU 980.0057
GLY 990.0063
VAL 1000.0038
ASN 1010.0046
LYS 1020.0033
ASP 1030.0046
GLU 1040.0060
ALA 1050.0044
GLU 1060.0061
THR 1070.0071
LEU 1080.0068
LYS 1090.0063
LYS 1100.0075
SER 1110.0058
LEU 1120.0049
GLU 1130.0056
GLU 1140.0052
ALA 1150.0039
GLY 1160.0044
ALA 1170.0048
SER 1180.0053
VAL 1190.0053
GLU 1200.0057
ILE 1210.0025
LYS 1220.0034
GLU 1230.0079
ALA 1240.0111
ALA 1250.0130
ALA 1260.0249
LYS 1270.0241
ALA 1280.0209
TYR 1290.0220
LYS 1300.0187
ILE 1310.0155
ILE 1320.0084
SER 1330.0062
LEU 1340.0087
LYS 1350.0141
TYR 1360.0223
THR 1370.0159
ARG 1380.0131
LYS 1390.0089
VAL 1400.0058
CYS 1410.0181
ILE 1420.0259
GLY 1430.0340
PRO 1440.0385
GLY 1450.0492
PRO 1460.0344
GLY 1470.0506
LYS 1480.0369
ALA 1490.0252
TYR 1500.0189
LYS 1510.0084
ILE 1520.0068
ILE 1530.0049
SER 1540.0034
LEU 1550.0025
LYS 1560.0043
TYR 1570.0063
THR 1580.0065
ARG 1590.0087
LYS 1600.0089
VAL 1610.0079
CYS 1620.0073
GLY 1630.0051
PRO 1640.0054
GLY 1650.0052
PRO 1660.0197
GLY 1670.0303
GLY 1680.0262
LYS 1690.0214
ALA 1700.0091
TYR 1710.0122
LYS 1720.0083
ILE 1730.0085
ILE 1740.0091
SER 1750.0131
LEU 1760.0086
LYS 1770.0068
TYR 1780.0062
THR 1790.0064
ARG 1800.0076
LYS 1810.0088
VAL 1820.0042
GLY 1830.0069
PRO 1840.0093
GLY 1850.0120
PRO 1860.0192
GLY 1870.0130
ILE 1880.0083
ILE 1890.0062
SER 1900.0060
LEU 1910.0084
LYS 1920.0072
TYR 1930.0076
THR 1940.0065
ARG 1950.0094
LYS 1960.0089
VAL 1970.0118
CYS 1980.0162
ILE 1990.0187
GLN 2000.0242
LEU 2010.0168
GLY 2020.0151
GLY 2030.0097
PRO 2040.0050
GLY 2050.0088
PRO 2060.0062
GLY 2070.0058
ASN 2080.0059
ILE 2090.0062
LYS 2100.0060
THR 2110.0074
ALA 2120.0099
PHE 2130.0108
HIS 2140.0092
CYS 2150.0104
TYR 2160.0184
ALA 2170.0157
ALA 2180.0153
TYR 2190.0201
MET 2200.0206
THR 2210.0165
SER 2220.0195
ILE 2230.0197
LYS 2240.0179
ALA 2250.0175
CYS 2260.0193
ASP 2270.0238
LEU 2280.0190
LYS 2290.0140
LYS 2300.0184
PRO 2310.0173
LEU 2320.0156
MET 2330.0144
GLU 2340.0189
SER 2350.0269
GLY 2360.0132
TRP 2370.0093
SER 2380.0129
ASP 2390.0099
THR 2400.0137
ALA 2410.0131
HIS 2420.0103
GLY 2430.0037
LYS 2440.0049
LYS 2450.0111
SER 2460.0053
LEU 2470.0076
PRO 2480.0072
SER 2490.0112
SER 2500.0124
SER 2510.0088
SER 2520.0088
TYR 2530.0082
SER 2540.0082
TYR 2550.0084
ARG 2560.0076
ARG 2570.0081
LYS 2580.0085
LEU 2590.0100
THR 2600.0109
ASN 2610.0106
PRO 2620.0153
ALA 2630.0102
ASN 2640.0165
LYS 2650.0121
GLU 2660.0073
GLU 2670.0114
SER 2680.0134
ILE 2690.0166
LYS 2700.0215
LYS 2710.0116
GLN 2720.0040
LYS 2730.0080
TYR 2740.0088
SER 2750.0171
TYR 2760.0143
PRO 2770.0159
TRP 2780.0118
GLN 2790.0055
THR 2800.0047
SER 2810.0104
LYS 2820.0091
CYS 2830.0037
PHE 2840.0078
ASP 2880.0074
TYR 2890.0045
GLN 2900.0046
TYR 2910.0113
CYS 2970.0083
ASN 2980.0060
PRO 2990.0030
GLY 3000.0067
LYS 3010.0072
LYS 3020.0057
ASN 3030.0060
THR 3040.0077
ILE 3050.0066
SER 3060.0068
GLY 3070.0053
TYR 3080.0082
LYS 3090.0090
ARG 3100.0065
MET 3110.0083
MET 3120.0131
ALA 3130.0154
THR 3140.0159
LYS 3150.0161
ASP 3160.0208
SER 3170.0119
PHE 3180.0069
GLN 3190.0041
SER 3200.0116
PHE 3210.0173
ASN 3220.0146
LEU 3230.0097
THR 3240.0091
GLU 3250.0133
PRO 3260.0125
HIS 3270.0152
ILE 3280.0200
THR 3290.0179
THR 3300.0280
ASN 3310.0404
LYS 3320.0241
LEU 3330.0212
GLU 3340.0177
TRP 3350.0149
ILE 3360.0140
ASP 3370.0236
PRO 3380.0247
ASP 3390.0339
GLY 3400.0381
ASN 3410.0421
THR 3420.0470
ARG 3430.0327
GLY 3440.0454
GLY 3450.0359
GLY 3460.0555
GLY 10.0073
SER 20.0067
HIS 30.0057
SER 40.0048
MET 50.0037
ARG 60.0030
TYR 70.0023
PHE 80.0025
PHE 90.0022
THR 100.0025
SER 110.0030
VAL 120.0036
SER 130.0047
ARG 140.0076
PRO 150.0091
GLY 160.0216
ARG 170.0195
GLY 180.0153
GLU 190.0088
PRO 200.0048
ARG 210.0042
PHE 220.0037
ILE 230.0039
ALA 240.0036
VAL 250.0042
GLY 260.0031
TYR 270.0042
VAL 280.0050
ASP 290.0065
ASP 300.0065
THR 310.0063
GLN 320.0054
PHE 330.0048
VAL 340.0041
ARG 350.0037
PHE 360.0042
ASP 370.0045
SER 380.0036
ASP 390.0050
ALA 400.0052
ALA 410.0042
SER 420.0047
GLN 430.0032
ARG 440.0040
MET 450.0043
GLU 460.0045
PRO 470.0056
ARG 480.0063
ALA 490.0075
PRO 500.0084
TRP 510.0083
ILE 520.0069
GLU 530.0079
GLN 540.0085
GLU 550.0070
GLY 560.0084
PRO 570.0083
GLU 580.0073
TYR 590.0057
TRP 600.0058
ASP 610.0061
GLY 620.0050
GLU 630.0040
THR 640.0041
ARG 650.0038
LYS 660.0023
VAL 670.0023
LYS 680.0017
ALA 690.0012
HIS 700.0014
SER 710.0028
GLN 720.0028
THR 730.0020
HIS 740.0020
ARG 750.0030
VAL 760.0040
ASP 770.0034
LEU 780.0028
GLY 790.0038
THR 800.0044
LEU 810.0036
ARG 820.0063
GLY 830.0080
TYR 840.0056
TYR 850.0076
ASN 860.0141
GLN 870.0130
SER 880.0154
GLU 890.0146
ALA 900.0135
GLY 910.0050
SER 920.0029
HIS 930.0025
THR 940.0015
VAL 950.0017
GLN 960.0016
ARG 970.0010
MET 980.0010
TYR 990.0012
GLY 1000.0017
CYS 1010.0044
ASP 1020.0055
VAL 1030.0068
GLY 1040.0080
SER 1050.0088
ASP 1060.0091
TRP 1070.0078
ARG 1080.0085
PHE 1090.0079
LEU 1100.0077
ARG 1110.0062
GLY 1120.0046
TYR 1130.0030
HIS 1140.0017
GLN 1150.0016
TYR 1160.0022
ALA 1170.0023
TYR 1180.0021
ASP 1190.0025
GLY 1200.0030
LYS 1210.0037
ASP 1220.0033
TYR 1230.0036
ILE 1240.0032
ALA 1250.0029
LEU 1260.0033
LYS 1270.0041
GLU 1280.0054
ASP 1290.0066
LEU 1300.0058
ARG 1310.0067
SER 1320.0051
TRP 1330.0036
THR 1340.0035
ALA 1350.0039
ALA 1360.0046
ASP 1370.0050
MET 1380.0058
ALA 1390.0059
ALA 1400.0058
GLN 1410.0049
THR 1420.0058
THR 1430.0056
LYS 1440.0050
HIS 1450.0056
LYS 1460.0064
TRP 1470.0060
GLU 1480.0053
ALA 1490.0065
ALA 1500.0077
HIS 1510.0083
VAL 1520.0078
ALA 1530.0067
GLU 1540.0090
GLN 1550.0102
LEU 1560.0062
ARG 1570.0074
ALA 1580.0088
TYR 1590.0068
LEU 1600.0058
GLU 1610.0074
GLY 1620.0079
THR 1630.0068
CYS 1640.0054
VAL 1650.0065
GLU 1660.0056
TRP 1670.0055
LEU 1680.0057
ARG 1690.0063
ARG 1700.0063
TYR 1710.0054
LEU 1720.0058
GLU 1730.0061
ASN 1740.0062
GLY 1750.0066
LYS 1760.0058
GLU 1770.0078
THR 1780.0075
LEU 1790.0062
GLN 1800.0067
ARG 1810.0117
THR 1820.0121
ASP 1830.0113
ALA 1840.0126
PRO 1850.0112
LYS 1860.0100
THR 1870.0079
HIS 1880.0082
MET 1890.0079
THR 1900.0099
HIS 1910.0104
HIS 1920.0111
ALA 1930.0109
VAL 1940.0092
SER 1950.0097
ASP 1960.0128
HIS 1970.0107
GLU 1980.0079
ALA 1990.0085
THR 2000.0069
LEU 2010.0046
ARG 2020.0046
CYS 2030.0045
TRP 2040.0066
ALA 2050.0074
LEU 2060.0058
SER 2070.0073
PHE 2080.0081
TYR 2090.0091
PRO 2100.0096
ALA 2110.0092
GLU 2120.0094
ILE 2130.0081
THR 2140.0070
LEU 2150.0056
THR 2160.0062
TRP 2170.0041
GLN 2180.0078
ARG 2190.0120
ASP 2200.0153
GLY 2210.0102
GLU 2220.0102
ASP 2230.0091
GLN 2240.0069
THR 2250.0090
GLN 2260.0066
ASP 2270.0061
THR 2280.0049
GLU 2290.0045
LEU 2300.0035
VAL 2310.0027
GLU 2320.0034
THR 2330.0038
ARG 2340.0039
PRO 2350.0045
ALA 2360.0040
GLY 2370.0029
ASP 2380.0040
GLY 2390.0050
THR 2400.0060
PHE 2410.0058
GLN 2420.0052
LYS 2430.0046
TRP 2440.0041
ALA 2450.0036
ALA 2460.0048
VAL 2470.0046
VAL 2480.0045
VAL 2490.0079
PRO 2500.0107
SER 2510.0181
GLY 2520.0246
GLN 2530.0215
GLU 2540.0175
GLN 2550.0229
ARG 2560.0180
TYR 2570.0113
THR 2580.0077
CYS 2590.0038
HIS 2600.0047
VAL 2610.0080
GLN 2620.0107
HIS 2630.0119
GLU 2640.0151
GLY 2650.0151
LEU 2660.0229
PRO 2670.0316
LYS 2680.0266
PRO 2690.0172
LEU 2700.0122
THR 2710.0045
LEU 2720.0095
ARG 2730.0146
TRP 2740.0163
GLU 2750.0251
PRO 2760.0384
GLN 2780.0019
ARG 2790.0020
THR 2800.0027
PRO 2810.0031
LYS 2820.0038
ILE 2830.0034
GLN 2840.0032
VAL 2850.0028
TYR 2860.0027
SER 2870.0025
ARG 2880.0035
HIS 2890.0041
PRO 2900.0052
ALA 2910.0053
GLU 2920.0057
ASN 2930.0070
GLY 2940.0069
LYS 2950.0056
SER 2960.0043
ASN 2970.0029
PHE 2980.0017
LEU 2990.0019
ASN 3000.0021
CYS 3010.0026
TYR 3020.0027
VAL 3030.0029
SER 3040.0027
GLY 3050.0026
PHE 3060.0026
HIS 3070.0023
PRO 3080.0026
SER 3090.0028
ASP 3100.0032
ILE 3110.0039
GLU 3120.0046
VAL 3130.0046
ASP 3140.0036
LEU 3150.0029
LEU 3160.0030
LYS 3170.0034
ASN 3180.0042
GLY 3190.0037
GLU 3200.0030
ARG 3210.0031
ILE 3220.0033
GLU 3230.0033
LYS 3240.0032
VAL 3250.0031
GLU 3260.0033
HIS 3270.0037
SER 3280.0044
ASP 3290.0039
LEU 3300.0033
SER 3310.0030
PHE 3320.0026
SER 3330.0026
LYS 3340.0027
ASP 3350.0022
TRP 3360.0020
SER 3370.0018
PHE 3380.0026
TYR 3390.0026
LEU 3400.0026
LEU 3410.0026
TYR 3420.0027
TYR 3430.0025
THR 3440.0023
GLU 3450.0026
PHE 3460.0031
THR 3470.0040
PRO 3480.0046
THR 3490.0079
GLU 3500.0104
LYS 3510.0102
ASP 3520.0063
GLU 3530.0047
TYR 3540.0036
ALA 3550.0037
CYS 3560.0038
ARG 3570.0044
VAL 3580.0042
ASN 3590.0045
HIS 3600.0041
VAL 3610.0043
THR 3620.0042
LEU 3630.0051
SER 3640.0058
GLN 3650.0052
PRO 3660.0043
LYS 3670.0037
ILE 3680.0049
VAL 3690.0050
LYS 3700.0044
TRP 3710.0043
ASP 3720.0050
ARG 3730.0060
ASP 3740.0070
MET 3750.0080
SER 10.0048
GLN 20.0042
PHE 30.0043
ARG 40.0054
VAL 50.0052
SER 60.0082
PRO 70.0094
LEU 80.0107
ASP 90.0127
ARG 100.0126
THR 110.0126
TRP 120.0110
ASN 130.0098
LEU 140.0105
GLY 150.0092
GLU 160.0081
THR 170.0059
VAL 180.0065
GLU 190.0051
LEU 200.0058
LYS 210.0043
CYS 220.0040
GLN 230.0049
VAL 240.0038
LEU 250.0050
LEU 260.0037
SER 270.0036
ASN 280.0044
PRO 290.0046
THR 300.0055
SER 310.0092
GLY 320.0081
CYS 330.0049
SER 340.0038
TRP 350.0033
LEU 360.0049
PHE 370.0079
GLN 380.0098
PRO 390.0132
ARG 400.0154
GLY 410.0112
ALA 420.0088
ALA 430.0078
ALA 440.0088
SER 450.0079
PRO 460.0081
THR 470.0097
PHE 480.0089
LEU 490.0090
LEU 500.0082
TYR 510.0089
LEU 520.0090
SER 530.0117
GLN 540.0151
ASN 550.0165
LYS 560.0178
PRO 570.0141
LYS 580.0152
ALA 590.0146
ALA 600.0153
GLU 610.0229
GLY 620.0234
LEU 630.0179
ASP 640.0164
THR 650.0137
GLN 660.0111
ARG 670.0087
PHE 680.0067
SER 690.0053
GLY 700.0043
LYS 710.0055
ARG 720.0073
LEU 730.0089
GLY 740.0110
ASP 750.0092
THR 760.0069
PHE 770.0041
VAL 780.0023
LEU 790.0013
THR 800.0024
LEU 810.0049
SER 820.0055
ASP 830.0083
PHE 840.0095
ARG 850.0126
ARG 860.0128
GLU 870.0139
ASN 880.0124
GLU 890.0131
GLY 900.0148
TYR 910.0100
TYR 920.0072
PHE 930.0047
CYS 940.0019
SER 950.0009
ALA 960.0057
LEU 970.0060
SER 980.0062
ASN 990.0064
SER 1000.0062
ILE 1010.0059
MET 1020.0043
TYR 1030.0034
PHE 1040.0028
SER 1050.0032
HIS 1060.0069
PHE 1070.0081
VAL 1080.0090
PRO 1090.0115
VAL 1100.0117
PHE 1110.0132
LEU 1120.0121
PRO 1130.0126
ALA 1140.0151
SER 10.0082
GLN 20.0072
PHE 30.0048
ARG 40.0030
VAL 50.0022
SER 60.0046
PRO 70.0070
LEU 80.0085
ASP 90.0135
ARG 100.0129
THR 110.0131
TRP 120.0092
ASN 130.0096
LEU 140.0063
GLY 150.0011
GLU 160.0053
THR 170.0061
VAL 180.0037
GLU 190.0064
LEU 200.0041
LYS 210.0040
CYS 220.0024
GLN 230.0026
VAL 240.0049
LEU 250.0054
LEU 260.0077
SER 270.0100
ASN 280.0104
PRO 290.0080
THR 300.0093
SER 310.0079
GLY 320.0072
CYS 330.0062
SER 340.0063
TRP 350.0054
LEU 360.0052
PHE 370.0046
GLN 380.0052
PRO 390.0056
ARG 400.0057
GLY 410.0077
ALA 420.0110
ALA 430.0108
ALA 440.0066
SER 450.0050
PRO 460.0047
THR 470.0042
PHE 480.0051
LEU 490.0048
LEU 500.0060
TYR 510.0068
LEU 520.0064
SER 530.0069
GLN 540.0076
ASN 550.0088
LYS 560.0079
PRO 570.0073
LYS 580.0077
ALA 590.0074
ALA 600.0074
GLU 610.0128
GLY 620.0164
LEU 630.0150
ASP 640.0173
THR 650.0150
GLN 660.0179
ARG 670.0137
PHE 680.0120
SER 690.0122
GLY 700.0102
LYS 710.0098
ARG 720.0082
LEU 730.0073
GLY 740.0056
ASP 750.0043
THR 760.0041
PHE 770.0056
VAL 780.0063
LEU 790.0067
THR 800.0082
LEU 810.0084
SER 820.0085
ASP 830.0049
PHE 840.0032
ARG 850.0084
ARG 860.0148
GLU 870.0165
ASN 880.0101
GLU 890.0103
GLY 900.0092
TYR 910.0047
TYR 920.0043
PHE 930.0048
CYS 940.0053
SER 950.0065
ALA 960.0076
LEU 970.0081
SER 980.0088
ASN 990.0096
SER 1000.0093
ILE 1010.0101
MET 1020.0084
TYR 1030.0082
PHE 1040.0070
SER 1050.0070
HIS 1060.0054
PHE 1070.0052
VAL 1080.0036
PRO 1090.0054
VAL 1100.0054
PHE 1110.0098
LEU 1120.0146
PRO 1130.0209
ALA 1140.0266

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.