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***  MHC1  ***

<R2> analysis for 2607180828532135053

---  normal mode 106  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0509
MET 10.0185
SER 20.0096
THR 30.0057
ILE 40.0153
THR 50.0141
LYS 60.0131
ASP 70.0106
GLN 80.0150
ILE 90.0129
LEU 100.0089
GLU 110.0118
GLY 120.0114
VAL 130.0094
ALA 140.0136
ALA 150.0118
LEU 160.0050
SER 170.0073
VAL 180.0084
MET 190.0020
GLU 200.0024
ILE 210.0095
VAL 220.0059
GLU 230.0101
LEU 240.0159
ILE 250.0156
SER 260.0116
ALA 270.0259
MET 280.0205
GLU 290.0043
GLU 300.0153
LYS 310.0156
PHE 320.0168
GLY 330.0308
VAL 340.0382
SER 350.0294
ALA 360.0307
ALA 370.0324
ALA 380.0132
VAL 390.0300
ALA 400.0509
ALA 410.0178
GLY 420.0291
PRO 430.0411
ALA 440.0337
ALA 450.0173
ALA 460.0263
VAL 470.0371
GLU 480.0337
ALA 490.0253
ALA 500.0386
GLU 510.0265
GLU 520.0240
GLN 530.0213
THR 540.0246
GLU 550.0218
PHE 560.0079
ASP 570.0066
VAL 580.0044
VAL 590.0051
LEU 600.0074
ALA 610.0084
SER 620.0058
PHE 630.0033
GLY 640.0042
GLU 650.0052
ASN 660.0032
LYS 670.0041
VAL 680.0064
ALA 690.0050
VAL 700.0052
ILE 710.0054
LYS 720.0048
ALA 730.0055
VAL 740.0089
ARG 750.0103
GLY 760.0074
ALA 770.0127
THR 780.0159
GLY 790.0157
LEU 800.0172
GLY 810.0245
LEU 820.0198
LYS 830.0246
GLU 840.0236
ALA 850.0146
LYS 860.0106
ASP 870.0118
LEU 880.0109
VAL 890.0052
GLU 900.0040
SER 910.0071
ALA 920.0068
PRO 930.0069
ALA 940.0067
VAL 950.0064
LEU 960.0081
LYS 970.0069
GLU 980.0088
GLY 990.0111
VAL 1000.0075
ASN 1010.0102
LYS 1020.0090
ASP 1030.0065
GLU 1040.0034
ALA 1050.0029
GLU 1060.0059
THR 1070.0067
LEU 1080.0063
LYS 1090.0066
LYS 1100.0099
SER 1110.0094
LEU 1120.0074
GLU 1130.0071
GLU 1140.0086
ALA 1150.0078
GLY 1160.0062
ALA 1170.0057
SER 1180.0052
VAL 1190.0049
GLU 1200.0046
ILE 1210.0028
LYS 1220.0055
GLU 1230.0098
ALA 1240.0139
ALA 1250.0149
ALA 1260.0162
LYS 1270.0132
ALA 1280.0105
TYR 1290.0087
LYS 1300.0065
ILE 1310.0049
ILE 1320.0037
SER 1330.0027
LEU 1340.0019
LYS 1350.0026
TYR 1360.0026
THR 1370.0021
ARG 1380.0007
LYS 1390.0010
VAL 1400.0018
CYS 1410.0058
ILE 1420.0065
GLY 1430.0077
PRO 1440.0074
GLY 1450.0090
PRO 1460.0109
GLY 1470.0140
LYS 1480.0098
ALA 1490.0048
TYR 1500.0083
LYS 1510.0043
ILE 1520.0032
ILE 1530.0021
SER 1540.0019
LEU 1550.0023
LYS 1560.0024
TYR 1570.0023
THR 1580.0020
ARG 1590.0020
LYS 1600.0017
VAL 1610.0010
CYS 1620.0033
GLY 1630.0060
PRO 1640.0072
GLY 1650.0077
PRO 1660.0092
GLY 1670.0054
GLY 1680.0104
LYS 1690.0071
ALA 1700.0058
TYR 1710.0030
LYS 1720.0024
ILE 1730.0015
ILE 1740.0020
SER 1750.0018
LEU 1760.0036
LYS 1770.0028
TYR 1780.0020
THR 1790.0015
ARG 1800.0022
LYS 1810.0043
VAL 1820.0041
GLY 1830.0043
PRO 1840.0041
GLY 1850.0036
PRO 1860.0060
GLY 1870.0041
ILE 1880.0031
ILE 1890.0019
SER 1900.0013
LEU 1910.0024
LYS 1920.0021
TYR 1930.0017
THR 1940.0018
ARG 1950.0017
LYS 1960.0013
VAL 1970.0027
CYS 1980.0049
ILE 1990.0061
GLN 2000.0085
LEU 2010.0064
GLY 2020.0057
GLY 2030.0052
PRO 2040.0040
GLY 2050.0014
PRO 2060.0059
GLY 2070.0050
ASN 2080.0058
ILE 2090.0070
LYS 2100.0061
THR 2110.0064
ALA 2120.0081
PHE 2130.0066
HIS 2140.0048
CYS 2150.0068
TYR 2160.0090
ALA 2170.0071
ALA 2180.0076
TYR 2190.0095
MET 2200.0088
THR 2210.0074
SER 2220.0090
ILE 2230.0084
LYS 2240.0087
ALA 2250.0079
CYS 2260.0100
ASP 2270.0091
LEU 2280.0065
LYS 2290.0075
LYS 2300.0054
PRO 2310.0035
LEU 2320.0072
MET 2330.0041
GLU 2340.0105
SER 2350.0159
GLY 2360.0121
TRP 2370.0107
SER 2380.0145
ASP 2390.0145
THR 2400.0205
ALA 2410.0210
HIS 2420.0176
GLY 2430.0116
LYS 2440.0152
LYS 2450.0359
SER 2460.0234
LEU 2470.0217
PRO 2480.0076
SER 2490.0193
SER 2500.0193
SER 2510.0108
SER 2520.0109
TYR 2530.0098
SER 2540.0133
TYR 2550.0108
ARG 2560.0093
ARG 2570.0112
LYS 2580.0101
LEU 2590.0132
THR 2600.0136
ASN 2610.0153
PRO 2620.0188
ALA 2630.0087
ASN 2640.0188
LYS 2650.0166
GLU 2660.0030
GLU 2670.0091
SER 2680.0128
ILE 2690.0199
LYS 2700.0244
LYS 2710.0150
GLN 2720.0073
LYS 2730.0123
TYR 2740.0187
SER 2750.0280
TYR 2760.0230
PRO 2770.0247
TRP 2780.0150
GLN 2790.0109
THR 2800.0066
SER 2810.0176
LYS 2820.0130
CYS 2830.0062
PHE 2840.0145
ASP 2880.0030
TYR 2890.0016
GLN 2900.0009
TYR 2910.0019
CYS 2970.0030
ASN 2980.0016
PRO 2990.0017
GLY 3000.0013
LYS 3010.0015
LYS 3020.0020
ASN 3030.0026
THR 3040.0036
ILE 3050.0033
SER 3060.0054
GLY 3070.0036
TYR 3080.0033
LYS 3090.0030
ARG 3100.0006
MET 3110.0009
MET 3120.0020
ALA 3130.0026
THR 3140.0028
LYS 3150.0025
ASP 3160.0034
SER 3170.0008
PHE 3180.0010
GLN 3190.0030
SER 3200.0047
PHE 3210.0061
ASN 3220.0058
LEU 3230.0082
THR 3240.0136
GLU 3250.0155
PRO 3260.0109
HIS 3270.0203
ILE 3280.0203
THR 3290.0231
THR 3300.0287
ASN 3310.0234
LYS 3320.0138
LEU 3330.0131
GLU 3340.0173
TRP 3350.0174
ILE 3360.0216
ASP 3370.0214
PRO 3380.0234
ASP 3390.0259
GLY 3400.0294
ASN 3410.0278
THR 3420.0316
ARG 3430.0225
GLY 3440.0306
GLY 3450.0307
GLY 3460.0370
GLY 10.0128
SER 20.0122
HIS 30.0100
SER 40.0091
MET 50.0070
ARG 60.0053
TYR 70.0044
PHE 80.0046
PHE 90.0045
THR 100.0054
SER 110.0056
VAL 120.0041
SER 130.0076
ARG 140.0103
PRO 150.0140
GLY 160.0265
ARG 170.0224
GLY 180.0177
GLU 190.0129
PRO 200.0078
ARG 210.0056
PHE 220.0052
ILE 230.0047
ALA 240.0045
VAL 250.0044
GLY 260.0043
TYR 270.0053
VAL 280.0070
ASP 290.0070
ASP 300.0056
THR 310.0057
GLN 320.0051
PHE 330.0051
VAL 340.0046
ARG 350.0042
PHE 360.0050
ASP 370.0055
SER 380.0062
ASP 390.0066
ALA 400.0062
ALA 410.0071
SER 420.0065
GLN 430.0064
ARG 440.0057
MET 450.0052
GLU 460.0053
PRO 470.0058
ARG 480.0054
ALA 490.0062
PRO 500.0069
TRP 510.0069
ILE 520.0060
GLU 530.0060
GLN 540.0056
GLU 550.0048
GLY 560.0043
PRO 570.0047
GLU 580.0042
TYR 590.0042
TRP 600.0048
ASP 610.0047
GLY 620.0042
GLU 630.0045
THR 640.0053
ARG 650.0052
LYS 660.0048
VAL 670.0051
LYS 680.0060
ALA 690.0062
HIS 700.0063
SER 710.0058
GLN 720.0081
THR 730.0089
HIS 740.0070
ARG 750.0078
VAL 760.0096
ASP 770.0089
LEU 780.0083
GLY 790.0098
THR 800.0103
LEU 810.0087
ARG 820.0091
GLY 830.0108
TYR 840.0100
TYR 850.0089
ASN 860.0110
GLN 870.0096
SER 880.0121
GLU 890.0128
ALA 900.0126
GLY 910.0085
SER 920.0063
HIS 930.0049
THR 940.0037
VAL 950.0056
GLN 960.0051
ARG 970.0043
MET 980.0046
TYR 990.0047
GLY 1000.0058
CYS 1010.0092
ASP 1020.0111
VAL 1030.0117
GLY 1040.0137
SER 1050.0141
ASP 1060.0141
TRP 1070.0112
ARG 1080.0124
PHE 1090.0123
LEU 1100.0150
ARG 1110.0118
GLY 1120.0094
TYR 1130.0077
HIS 1140.0055
GLN 1150.0057
TYR 1160.0062
ALA 1170.0058
TYR 1180.0058
ASP 1190.0048
GLY 1200.0048
LYS 1210.0082
ASP 1220.0079
TYR 1230.0076
ILE 1240.0075
ALA 1250.0076
LEU 1260.0098
LYS 1270.0127
GLU 1280.0150
ASP 1290.0147
LEU 1300.0115
ARG 1310.0117
SER 1320.0103
TRP 1330.0094
THR 1340.0110
ALA 1350.0098
ALA 1360.0090
ASP 1370.0092
MET 1380.0097
ALA 1390.0099
ALA 1400.0098
GLN 1410.0105
THR 1420.0091
THR 1430.0087
LYS 1440.0094
HIS 1450.0083
LYS 1460.0061
TRP 1470.0067
GLU 1480.0082
ALA 1490.0064
ALA 1500.0052
HIS 1510.0085
VAL 1520.0069
ALA 1530.0095
GLU 1540.0101
GLN 1550.0075
LEU 1560.0063
ARG 1570.0091
ALA 1580.0081
TYR 1590.0054
LEU 1600.0075
GLU 1610.0104
GLY 1620.0084
THR 1630.0055
CYS 1640.0062
VAL 1650.0076
GLU 1660.0063
TRP 1670.0051
LEU 1680.0069
ARG 1690.0065
ARG 1700.0046
TYR 1710.0063
LEU 1720.0075
GLU 1730.0064
ASN 1740.0060
GLY 1750.0076
LYS 1760.0093
GLU 1770.0094
THR 1780.0084
LEU 1790.0086
GLN 1800.0099
ARG 1810.0113
THR 1820.0115
ASP 1830.0091
ALA 1840.0100
PRO 1850.0082
LYS 1860.0069
THR 1870.0068
HIS 1880.0060
MET 1890.0062
THR 1900.0061
HIS 1910.0069
HIS 1920.0063
ALA 1930.0056
VAL 1940.0057
SER 1950.0080
ASP 1960.0103
HIS 1970.0070
GLU 1980.0049
ALA 1990.0032
THR 2000.0029
LEU 2010.0049
ARG 2020.0059
CYS 2030.0064
TRP 2040.0068
ALA 2050.0078
LEU 2060.0060
SER 2070.0051
PHE 2080.0073
TYR 2090.0084
PRO 2100.0102
ALA 2110.0125
GLU 2120.0135
ILE 2130.0114
THR 2140.0107
LEU 2150.0081
THR 2160.0044
TRP 2170.0030
GLN 2180.0034
ARG 2190.0049
ASP 2200.0076
GLY 2210.0038
GLU 2220.0033
ASP 2230.0025
GLN 2240.0022
THR 2250.0030
GLN 2260.0045
ASP 2270.0038
THR 2280.0009
GLU 2290.0027
LEU 2300.0046
VAL 2310.0083
GLU 2320.0091
THR 2330.0093
ARG 2340.0098
PRO 2350.0104
ALA 2360.0079
GLY 2370.0099
ASP 2380.0071
GLY 2390.0091
THR 2400.0074
PHE 2410.0081
GLN 2420.0074
LYS 2430.0075
TRP 2440.0068
ALA 2450.0069
ALA 2460.0035
VAL 2470.0009
VAL 2480.0015
VAL 2490.0014
PRO 2500.0028
SER 2510.0028
GLY 2520.0074
GLN 2530.0077
GLU 2540.0067
GLN 2550.0111
ARG 2560.0082
TYR 2570.0053
THR 2580.0063
CYS 2590.0065
HIS 2600.0072
VAL 2610.0100
GLN 2620.0137
HIS 2630.0143
GLU 2640.0175
GLY 2650.0157
LEU 2660.0206
PRO 2670.0295
LYS 2680.0262
PRO 2690.0190
LEU 2700.0112
THR 2710.0091
LEU 2720.0106
ARG 2730.0109
TRP 2740.0101
GLU 2750.0144
PRO 2760.0253
GLN 2780.0055
ARG 2790.0071
THR 2800.0072
PRO 2810.0090
LYS 2820.0097
ILE 2830.0140
GLN 2840.0129
VAL 2850.0129
TYR 2860.0118
SER 2870.0113
ARG 2880.0104
HIS 2890.0090
PRO 2900.0096
ALA 2910.0108
GLU 2920.0102
ASN 2930.0134
GLY 2940.0122
LYS 2950.0094
SER 2960.0086
ASN 2970.0095
PHE 2980.0105
LEU 2990.0116
ASN 3000.0120
CYS 3010.0131
TYR 3020.0132
VAL 3030.0101
SER 3040.0097
GLY 3050.0085
PHE 3060.0071
HIS 3070.0064
PRO 3080.0087
SER 3090.0096
ASP 3100.0099
ILE 3110.0097
GLU 3120.0104
VAL 3130.0177
ASP 3140.0168
LEU 3150.0157
LEU 3160.0164
LYS 3170.0159
ASN 3180.0209
GLY 3190.0224
GLU 3200.0203
ARG 3210.0188
ILE 3220.0156
GLU 3230.0125
LYS 3240.0125
VAL 3250.0120
GLU 3260.0119
HIS 3270.0116
SER 3280.0068
ASP 3290.0058
LEU 3300.0048
SER 3310.0056
PHE 3320.0058
SER 3330.0057
LYS 3340.0061
ASP 3350.0057
TRP 3360.0054
SER 3370.0049
PHE 3380.0077
TYR 3390.0085
LEU 3400.0093
LEU 3410.0103
TYR 3420.0108
TYR 3430.0130
THR 3440.0120
GLU 3450.0102
PHE 3460.0110
THR 3470.0109
PRO 3480.0132
THR 3490.0182
GLU 3500.0260
LYS 3510.0276
ASP 3520.0212
GLU 3530.0176
TYR 3540.0167
ALA 3550.0177
CYS 3560.0177
ARG 3570.0191
VAL 3580.0133
ASN 3590.0126
HIS 3600.0122
VAL 3610.0115
THR 3620.0113
LEU 3630.0132
SER 3640.0121
GLN 3650.0117
PRO 3660.0126
LYS 3670.0143
ILE 3680.0184
VAL 3690.0178
LYS 3700.0173
TRP 3710.0162
ASP 3720.0164
ARG 3730.0134
ASP 3740.0110
MET 3750.0112
SER 10.0057
GLN 20.0051
PHE 30.0047
ARG 40.0054
VAL 50.0045
SER 60.0044
PRO 70.0038
LEU 80.0050
ASP 90.0047
ARG 100.0035
THR 110.0049
TRP 120.0051
ASN 130.0064
LEU 140.0085
GLY 150.0084
GLU 160.0049
THR 170.0045
VAL 180.0024
GLU 190.0019
LEU 200.0012
LYS 210.0033
CYS 220.0038
GLN 230.0050
VAL 240.0051
LEU 250.0063
LEU 260.0035
SER 270.0032
ASN 280.0020
PRO 290.0027
THR 300.0022
SER 310.0049
GLY 320.0050
CYS 330.0039
SER 340.0031
TRP 350.0030
LEU 360.0040
PHE 370.0052
GLN 380.0059
PRO 390.0077
ARG 400.0087
GLY 410.0082
ALA 420.0064
ALA 430.0065
ALA 440.0069
SER 450.0067
PRO 460.0061
THR 470.0070
PHE 480.0068
LEU 490.0068
LEU 500.0067
TYR 510.0067
LEU 520.0066
SER 530.0073
GLN 540.0084
ASN 550.0091
LYS 560.0113
PRO 570.0097
LYS 580.0099
ALA 590.0096
ALA 600.0094
GLU 610.0128
GLY 620.0143
LEU 630.0124
ASP 640.0136
THR 650.0137
GLN 660.0134
ARG 670.0109
PHE 680.0083
SER 690.0086
GLY 700.0079
LYS 710.0066
ARG 720.0069
LEU 730.0080
GLY 740.0087
ASP 750.0073
THR 760.0063
PHE 770.0047
VAL 780.0045
LEU 790.0035
THR 800.0046
LEU 810.0050
SER 820.0079
ASP 830.0095
PHE 840.0077
ARG 850.0104
ARG 860.0095
GLU 870.0111
ASN 880.0084
GLU 890.0075
GLY 900.0080
TYR 910.0050
TYR 920.0034
PHE 930.0022
CYS 940.0020
SER 950.0023
ALA 960.0050
LEU 970.0047
SER 980.0042
ASN 990.0043
SER 1000.0049
ILE 1010.0058
MET 1020.0052
TYR 1030.0048
PHE 1040.0044
SER 1050.0044
HIS 1060.0037
PHE 1070.0040
VAL 1080.0032
PRO 1090.0048
VAL 1100.0043
PHE 1110.0072
LEU 1120.0064
PRO 1130.0050
ALA 1140.0054
SER 10.0095
GLN 20.0094
PHE 30.0070
ARG 40.0045
VAL 50.0028
SER 60.0036
PRO 70.0065
LEU 80.0083
ASP 90.0139
ARG 100.0134
THR 110.0131
TRP 120.0091
ASN 130.0090
LEU 140.0041
GLY 150.0060
GLU 160.0090
THR 170.0096
VAL 180.0059
GLU 190.0078
LEU 200.0045
LYS 210.0047
CYS 220.0048
GLN 230.0057
VAL 240.0083
LEU 250.0088
LEU 260.0105
SER 270.0127
ASN 280.0137
PRO 290.0116
THR 300.0127
SER 310.0102
GLY 320.0096
CYS 330.0086
SER 340.0085
TRP 350.0075
LEU 360.0066
PHE 370.0058
GLN 380.0064
PRO 390.0068
ARG 400.0073
GLY 410.0048
ALA 420.0069
ALA 430.0071
ALA 440.0047
SER 450.0041
PRO 460.0067
THR 470.0065
PHE 480.0073
LEU 490.0068
LEU 500.0079
TYR 510.0087
LEU 520.0089
SER 530.0091
GLN 540.0093
ASN 550.0091
LYS 560.0092
PRO 570.0093
LYS 580.0093
ALA 590.0094
ALA 600.0094
GLU 610.0158
GLY 620.0184
LEU 630.0170
ASP 640.0185
THR 650.0167
GLN 660.0198
ARG 670.0157
PHE 680.0137
SER 690.0134
GLY 700.0107
LYS 710.0113
ARG 720.0105
LEU 730.0092
GLY 740.0088
ASP 750.0080
THR 760.0063
PHE 770.0081
VAL 780.0080
LEU 790.0084
THR 800.0097
LEU 810.0104
SER 820.0118
ASP 830.0084
PHE 840.0034
ARG 850.0061
ARG 860.0118
GLU 870.0147
ASN 880.0092
GLU 890.0094
GLY 900.0097
TYR 910.0055
TYR 920.0050
PHE 930.0056
CYS 940.0065
SER 950.0082
ALA 960.0083
LEU 970.0077
SER 980.0074
ASN 990.0069
SER 1000.0069
ILE 1010.0077
MET 1020.0072
TYR 1030.0074
PHE 1040.0070
SER 1050.0073
HIS 1060.0064
PHE 1070.0059
VAL 1080.0041
PRO 1090.0054
VAL 1100.0050
PHE 1110.0090
LEU 1120.0129
PRO 1130.0198
ALA 1140.0256

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.