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***  MHC1  ***

<R2> analysis for 2607180828532135053

---  normal mode 25  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0615
MET 10.0097
SER 20.0097
THR 30.0102
ILE 40.0100
THR 50.0105
LYS 60.0107
ASP 70.0109
GLN 80.0103
ILE 90.0100
LEU 100.0106
GLU 110.0105
GLY 120.0098
VAL 130.0100
ALA 140.0107
ALA 150.0105
LEU 160.0104
SER 170.0108
VAL 180.0106
MET 190.0103
GLU 200.0098
ILE 210.0095
VAL 220.0093
GLU 230.0092
LEU 240.0087
ILE 250.0080
SER 260.0081
ALA 270.0096
MET 280.0086
GLU 290.0070
GLU 300.0083
LYS 310.0105
PHE 320.0096
GLY 330.0073
VAL 340.0071
SER 350.0056
ALA 360.0065
ALA 370.0083
ALA 380.0096
VAL 390.0114
ALA 400.0128
ALA 410.0148
GLY 420.0172
PRO 430.0176
ALA 440.0182
ALA 450.0149
ALA 460.0127
VAL 470.0121
GLU 480.0112
ALA 490.0092
ALA 500.0074
GLU 510.0079
GLU 520.0093
GLN 530.0086
THR 540.0101
GLU 550.0094
PHE 560.0098
ASP 570.0088
VAL 580.0102
VAL 590.0086
LEU 600.0094
ALA 610.0087
SER 620.0096
PHE 630.0112
GLY 640.0133
GLU 650.0144
ASN 660.0158
LYS 670.0137
VAL 680.0162
ALA 690.0178
VAL 700.0153
ILE 710.0152
LYS 720.0183
ALA 730.0178
VAL 740.0154
ARG 750.0175
GLY 760.0197
ALA 770.0176
THR 780.0163
GLY 790.0190
LEU 800.0174
GLY 810.0185
LEU 820.0176
LYS 830.0156
GLU 840.0143
ALA 850.0140
LYS 860.0126
ASP 870.0106
LEU 880.0100
VAL 890.0100
GLU 900.0082
SER 910.0066
ALA 920.0065
PRO 930.0060
ALA 940.0069
VAL 950.0079
LEU 960.0106
LYS 970.0112
GLU 980.0096
GLY 990.0101
VAL 1000.0124
ASN 1010.0136
LYS 1020.0141
ASP 1030.0170
GLU 1040.0164
ALA 1050.0142
GLU 1060.0164
THR 1070.0183
LEU 1080.0162
LYS 1090.0155
LYS 1100.0184
SER 1110.0188
LEU 1120.0162
GLU 1130.0170
GLU 1140.0197
ALA 1150.0181
GLY 1160.0166
ALA 1170.0138
SER 1180.0127
VAL 1190.0118
GLU 1200.0104
ILE 1210.0105
LYS 1220.0086
GLU 1230.0082
ALA 1240.0071
ALA 1250.0055
ALA 1260.0049
LYS 1270.0042
ALA 1280.0040
TYR 1290.0025
LYS 1300.0024
ILE 1310.0028
ILE 1320.0033
SER 1330.0064
LEU 1340.0061
LYS 1350.0100
TYR 1360.0087
THR 1370.0128
ARG 1380.0123
LYS 1390.0159
VAL 1400.0171
CYS 1410.0190
ILE 1420.0236
GLY 1430.0243
PRO 1440.0310
GLY 1450.0331
PRO 1460.0380
GLY 1470.0460
LYS 1480.0481
ALA 1490.0490
TYR 1500.0433
LYS 1510.0442
ILE 1520.0391
ILE 1530.0373
SER 1540.0333
LEU 1550.0305
LYS 1560.0275
TYR 1570.0238
THR 1580.0207
ARG 1590.0174
LYS 1600.0152
VAL 1610.0119
CYS 1620.0101
GLY 1630.0062
PRO 1640.0089
GLY 1650.0086
PRO 1660.0076
GLY 1670.0141
GLY 1680.0155
LYS 1690.0188
ALA 1700.0170
TYR 1710.0197
LYS 1720.0213
ILE 1730.0236
ILE 1740.0263
SER 1750.0296
LEU 1760.0335
LYS 1770.0369
TYR 1780.0405
THR 1790.0436
ARG 1800.0474
LYS 1810.0491
VAL 1820.0524
GLY 1830.0523
PRO 1840.0505
GLY 1850.0428
PRO 1860.0341
GLY 1870.0331
ILE 1880.0274
ILE 1890.0263
SER 1900.0229
LEU 1910.0204
LYS 1920.0185
TYR 1930.0149
THR 1940.0131
ARG 1950.0095
LYS 1960.0067
VAL 1970.0041
CYS 1980.0027
ILE 1990.0026
GLN 2000.0039
LEU 2010.0036
GLY 2020.0034
GLY 2030.0033
PRO 2040.0030
GLY 2050.0025
PRO 2060.0022
GLY 2070.0025
ASN 2080.0031
ILE 2090.0032
LYS 2100.0030
THR 2110.0035
ALA 2120.0037
PHE 2130.0037
HIS 2140.0037
CYS 2150.0041
TYR 2160.0036
ALA 2170.0046
ALA 2180.0052
TYR 2190.0042
MET 2200.0039
THR 2210.0048
SER 2220.0050
ILE 2230.0045
LYS 2240.0052
ALA 2250.0047
CYS 2260.0081
ASP 2270.0074
LEU 2280.0110
LYS 2290.0110
LYS 2300.0151
PRO 2310.0150
LEU 2320.0166
MET 2330.0160
GLU 2340.0201
SER 2350.0215
GLY 2360.0211
TRP 2370.0184
SER 2380.0173
ASP 2390.0150
THR 2400.0149
ALA 2410.0130
HIS 2420.0142
GLY 2430.0153
LYS 2440.0281
LYS 2450.0290
SER 2460.0251
LEU 2470.0157
PRO 2480.0147
SER 2490.0098
SER 2500.0076
SER 2510.0112
SER 2520.0116
TYR 2530.0091
SER 2540.0099
TYR 2550.0086
ARG 2560.0096
ARG 2570.0106
LYS 2580.0117
LEU 2590.0142
THR 2600.0166
ASN 2610.0194
PRO 2620.0241
ALA 2630.0239
ASN 2640.0213
LYS 2650.0173
GLU 2660.0135
GLU 2670.0119
SER 2680.0107
ILE 2690.0127
LYS 2700.0149
LYS 2710.0153
GLN 2720.0169
LYS 2730.0149
TYR 2740.0150
SER 2750.0144
TYR 2760.0128
PRO 2770.0098
TRP 2780.0095
GLN 2790.0067
THR 2800.0048
SER 2810.0074
LYS 2820.0181
CYS 2830.0253
PHE 2840.0428
ASP 2880.0092
TYR 2890.0090
GLN 2900.0142
TYR 2910.0177
CYS 2970.0615
ASN 2980.0586
PRO 2990.0490
GLY 3000.0500
LYS 3010.0434
LYS 3020.0357
ASN 3030.0289
THR 3040.0315
ILE 3050.0236
SER 3060.0207
GLY 3070.0127
TYR 3080.0147
LYS 3090.0169
ARG 3100.0114
MET 3110.0082
MET 3120.0122
ALA 3130.0107
THR 3140.0078
LYS 3150.0097
ASP 3160.0083
SER 3170.0081
PHE 3180.0077
GLN 3190.0076
SER 3200.0071
PHE 3210.0070
ASN 3220.0068
LEU 3230.0057
THR 3240.0068
GLU 3250.0063
PRO 3260.0044
HIS 3270.0056
ILE 3280.0049
THR 3290.0082
THR 3300.0102
ASN 3310.0091
LYS 3320.0045
LEU 3330.0025
GLU 3340.0042
TRP 3350.0052
ILE 3360.0078
ASP 3370.0081
PRO 3380.0091
ASP 3390.0100
GLY 3400.0105
ASN 3410.0103
THR 3420.0095
ARG 3430.0121
GLY 3440.0124
GLY 3450.0147
GLY 3460.0156
GLY 10.0044
SER 20.0040
HIS 30.0038
SER 40.0034
MET 50.0034
ARG 60.0027
TYR 70.0025
PHE 80.0017
PHE 90.0016
THR 100.0011
SER 110.0015
VAL 120.0017
SER 130.0025
ARG 140.0029
PRO 150.0038
GLY 160.0047
ARG 170.0041
GLY 180.0035
GLU 190.0031
PRO 200.0022
ARG 210.0011
PHE 220.0012
ILE 230.0010
ALA 240.0017
VAL 250.0020
GLY 260.0027
TYR 270.0029
VAL 280.0035
ASP 290.0032
ASP 300.0029
THR 310.0033
GLN 320.0029
PHE 330.0034
VAL 340.0030
ARG 350.0023
PHE 360.0019
ASP 370.0011
SER 380.0011
ASP 390.0004
ALA 400.0010
ALA 410.0014
SER 420.0021
GLN 430.0020
ARG 440.0027
MET 450.0029
GLU 460.0030
PRO 470.0035
ARG 480.0033
ALA 490.0040
PRO 500.0048
TRP 510.0051
ILE 520.0046
GLU 530.0048
GLN 540.0055
GLU 550.0053
GLY 560.0056
PRO 570.0051
GLU 580.0053
TYR 590.0049
TRP 600.0042
ASP 610.0043
GLY 620.0045
GLU 630.0038
THR 640.0033
ARG 650.0038
LYS 660.0037
VAL 670.0028
LYS 680.0027
ALA 690.0033
HIS 700.0029
SER 710.0022
GLN 720.0028
THR 730.0032
HIS 740.0026
ARG 750.0026
VAL 760.0032
ASP 770.0030
LEU 780.0028
GLY 790.0035
THR 800.0037
LEU 810.0032
ARG 820.0035
GLY 830.0040
TYR 840.0038
TYR 850.0037
ASN 860.0036
GLN 870.0037
SER 880.0044
GLU 890.0050
ALA 900.0049
GLY 910.0036
SER 920.0029
HIS 930.0026
THR 940.0019
VAL 950.0020
GLN 960.0016
ARG 970.0020
MET 980.0021
TYR 990.0028
GLY 1000.0032
CYS 1010.0036
ASP 1020.0036
VAL 1030.0043
GLY 1040.0044
SER 1050.0048
ASP 1060.0054
TRP 1070.0052
ARG 1080.0052
PHE 1090.0048
LEU 1100.0042
ARG 1110.0038
GLY 1120.0037
TYR 1130.0032
HIS 1140.0030
GLN 1150.0025
TYR 1160.0024
ALA 1170.0021
TYR 1180.0024
ASP 1190.0022
GLY 1200.0017
LYS 1210.0020
ASP 1220.0023
TYR 1230.0027
ILE 1240.0030
ALA 1250.0030
LEU 1260.0036
LYS 1270.0038
GLU 1280.0038
ASP 1290.0045
LEU 1300.0044
ARG 1310.0049
SER 1320.0046
TRP 1330.0041
THR 1340.0037
ALA 1350.0038
ALA 1360.0034
ASP 1370.0036
MET 1380.0041
ALA 1390.0038
ALA 1400.0036
GLN 1410.0044
THR 1420.0045
THR 1430.0040
LYS 1440.0043
HIS 1450.0050
LYS 1460.0048
TRP 1470.0045
GLU 1480.0052
ALA 1490.0056
ALA 1500.0051
HIS 1510.0054
VAL 1520.0047
ALA 1530.0047
GLU 1540.0053
GLN 1550.0050
LEU 1560.0045
ARG 1570.0049
ALA 1580.0053
TYR 1590.0048
LEU 1600.0044
GLU 1610.0050
GLY 1620.0054
THR 1630.0052
CYS 1640.0045
VAL 1650.0048
GLU 1660.0055
TRP 1670.0051
LEU 1680.0046
ARG 1690.0053
ARG 1700.0055
TYR 1710.0050
LEU 1720.0051
GLU 1730.0059
ASN 1740.0058
GLY 1750.0053
LYS 1760.0057
GLU 1770.0057
THR 1780.0050
LEU 1790.0047
GLN 1800.0051
ARG 1810.0052
THR 1820.0047
ASP 1830.0048
ALA 1840.0046
PRO 1850.0043
LYS 1860.0049
THR 1870.0047
HIS 1880.0050
MET 1890.0049
THR 1900.0054
HIS 1910.0057
HIS 1920.0061
ALA 1930.0064
VAL 1940.0062
SER 1950.0069
ASP 1960.0073
HIS 1970.0065
GLU 1980.0058
ALA 1990.0055
THR 2000.0049
LEU 2010.0045
ARG 2020.0042
CYS 2030.0039
TRP 2040.0041
ALA 2050.0039
LEU 2060.0043
SER 2070.0046
PHE 2080.0040
TYR 2090.0038
PRO 2100.0034
ALA 2110.0027
GLU 2120.0023
ILE 2130.0023
THR 2140.0019
LEU 2150.0022
THR 2160.0018
TRP 2170.0023
GLN 2180.0020
ARG 2190.0024
ASP 2200.0020
GLY 2210.0014
GLU 2220.0011
ASP 2230.0010
GLN 2240.0018
THR 2250.0015
GLN 2260.0023
ASP 2270.0028
THR 2280.0024
GLU 2290.0028
LEU 2300.0024
VAL 2310.0026
GLU 2320.0021
THR 2330.0024
ARG 2340.0028
PRO 2350.0032
ALA 2360.0039
GLY 2370.0040
ASP 2380.0046
GLY 2390.0042
THR 2400.0040
PHE 2410.0035
GLN 2420.0035
LYS 2430.0031
TRP 2440.0033
ALA 2450.0030
ALA 2460.0035
VAL 2470.0036
VAL 2480.0044
VAL 2490.0043
PRO 2500.0050
SER 2510.0057
GLY 2520.0054
GLN 2530.0045
GLU 2540.0045
GLN 2550.0043
ARG 2560.0034
TYR 2570.0033
THR 2580.0031
CYS 2590.0030
HIS 2600.0026
VAL 2610.0030
GLN 2620.0028
HIS 2630.0032
GLU 2640.0037
GLY 2650.0044
LEU 2660.0042
PRO 2670.0046
LYS 2680.0040
PRO 2690.0033
LEU 2700.0036
THR 2710.0034
LEU 2720.0040
ARG 2730.0041
TRP 2740.0046
GLU 2750.0050
PRO 2760.0050
GLN 2780.0027
ARG 2790.0020
THR 2800.0024
PRO 2810.0021
LYS 2820.0025
ILE 2830.0031
GLN 2840.0035
VAL 2850.0040
TYR 2860.0045
SER 2870.0048
ARG 2880.0048
HIS 2890.0056
PRO 2900.0062
ALA 2910.0065
GLU 2920.0074
ASN 2930.0077
GLY 2940.0078
LYS 2950.0074
SER 2960.0066
ASN 2970.0058
PHE 2980.0049
LEU 2990.0045
ASN 3000.0038
CYS 3010.0032
TYR 3020.0026
VAL 3030.0020
SER 3040.0015
GLY 3050.0012
PHE 3060.0013
HIS 3070.0013
PRO 3080.0015
SER 3090.0010
ASP 3100.0015
ILE 3110.0015
GLU 3120.0018
VAL 3130.0021
ASP 3140.0028
LEU 3150.0035
LEU 3160.0044
LYS 3170.0052
ASN 3180.0059
GLY 3190.0053
GLU 3200.0048
ARG 3210.0039
ILE 3220.0038
GLU 3230.0033
LYS 3240.0031
VAL 3250.0029
GLU 3260.0026
HIS 3270.0022
SER 3280.0020
ASP 3290.0015
LEU 3300.0008
SER 3310.0009
PHE 3320.0006
SER 3330.0006
LYS 3340.0008
ASP 3350.0007
TRP 3360.0007
SER 3370.0005
PHE 3380.0003
TYR 3390.0010
LEU 3400.0014
LEU 3410.0022
TYR 3420.0025
TYR 3430.0034
THR 3440.0041
GLU 3450.0049
PHE 3460.0055
THR 3470.0064
PRO 3480.0066
THR 3490.0074
GLU 3500.0079
LYS 3510.0078
ASP 3520.0069
GLU 3530.0063
TYR 3540.0053
ALA 3550.0047
CYS 3560.0037
ARG 3570.0035
VAL 3580.0027
ASN 3590.0028
HIS 3600.0026
VAL 3610.0032
THR 3620.0033
LEU 3630.0046
SER 3640.0058
GLN 3650.0053
PRO 3660.0042
LYS 3670.0045
ILE 3680.0044
VAL 3690.0046
LYS 3700.0052
TRP 3710.0053
ASP 3720.0059
ARG 3730.0060
ASP 3740.0065
MET 3750.0056
SER 10.0020
GLN 20.0015
PHE 30.0017
ARG 40.0021
VAL 50.0028
SER 60.0033
PRO 70.0038
LEU 80.0038
ASP 90.0042
ARG 100.0048
THR 110.0049
TRP 120.0057
ASN 130.0065
LEU 140.0072
GLY 150.0075
GLU 160.0065
THR 170.0059
VAL 180.0052
GLU 190.0046
LEU 200.0039
LYS 210.0031
CYS 220.0025
GLN 230.0018
VAL 240.0012
LEU 250.0008
LEU 260.0005
SER 270.0007
ASN 280.0011
PRO 290.0007
THR 300.0011
SER 310.0009
GLY 320.0012
CYS 330.0019
SER 340.0027
TRP 350.0034
LEU 360.0040
PHE 370.0047
GLN 380.0052
PRO 390.0059
ARG 400.0062
GLY 410.0070
ALA 420.0071
ALA 430.0068
ALA 440.0064
SER 450.0059
PRO 460.0050
THR 470.0050
PHE 480.0044
LEU 490.0043
LEU 500.0037
TYR 510.0027
LEU 520.0023
SER 530.0015
GLN 540.0015
ASN 550.0017
LYS 560.0026
PRO 570.0030
LYS 580.0032
ALA 590.0041
ALA 600.0046
GLU 610.0052
GLY 620.0059
LEU 630.0056
ASP 640.0060
THR 650.0055
GLN 660.0062
ARG 670.0061
PHE 680.0052
SER 690.0045
GLY 700.0037
LYS 710.0031
ARG 720.0024
LEU 730.0026
GLY 740.0019
ASP 750.0014
THR 760.0021
PHE 770.0025
VAL 780.0034
LEU 790.0039
THR 800.0047
LEU 810.0056
SER 820.0063
ASP 830.0070
PHE 840.0066
ARG 850.0071
ARG 860.0070
GLU 870.0070
ASN 880.0064
GLU 890.0060
GLY 900.0055
TYR 910.0048
TYR 920.0042
PHE 930.0035
CYS 940.0028
SER 950.0025
ALA 960.0017
LEU 970.0017
SER 980.0017
ASN 990.0025
SER 1000.0029
ILE 1010.0028
MET 1020.0026
TYR 1030.0024
PHE 1040.0028
SER 1050.0027
HIS 1060.0031
PHE 1070.0038
VAL 1080.0040
PRO 1090.0046
VAL 1100.0051
PHE 1110.0054
LEU 1120.0057
PRO 1130.0049
ALA 1140.0046
SER 10.0064
GLN 20.0059
PHE 30.0063
ARG 40.0072
VAL 50.0073
SER 60.0081
PRO 70.0087
LEU 80.0088
ASP 90.0097
ARG 100.0097
THR 110.0095
TRP 120.0093
ASN 130.0096
LEU 140.0093
GLY 150.0094
GLU 160.0095
THR 170.0089
VAL 180.0083
GLU 190.0081
LEU 200.0075
LYS 210.0073
CYS 220.0067
GLN 230.0065
VAL 240.0057
LEU 250.0059
LEU 260.0050
SER 270.0047
ASN 280.0039
PRO 290.0043
THR 300.0040
SER 310.0034
GLY 320.0041
CYS 330.0045
SER 340.0044
TRP 350.0051
LEU 360.0048
PHE 370.0052
GLN 380.0053
PRO 390.0058
ARG 400.0065
GLY 410.0059
ALA 420.0057
ALA 430.0049
ALA 440.0047
SER 450.0040
PRO 460.0043
THR 470.0041
PHE 480.0039
LEU 490.0047
LEU 500.0047
TYR 510.0044
LEU 520.0050
SER 530.0045
GLN 540.0048
ASN 550.0050
LYS 560.0055
PRO 570.0053
LYS 580.0045
ALA 590.0047
ALA 600.0041
GLU 610.0039
GLY 620.0047
LEU 630.0052
ASP 640.0063
THR 650.0064
GLN 660.0074
ARG 670.0074
PHE 680.0067
SER 690.0067
GLY 700.0065
LYS 710.0066
ARG 720.0063
LEU 730.0069
GLY 740.0064
ASP 750.0060
THR 760.0066
PHE 770.0063
VAL 780.0069
LEU 790.0068
THR 800.0074
LEU 810.0075
SER 820.0082
ASP 830.0086
PHE 840.0082
ARG 850.0079
ARG 860.0077
GLU 870.0068
ASN 880.0068
GLU 890.0072
GLY 900.0067
TYR 910.0065
TYR 920.0062
PHE 930.0058
CYS 940.0053
SER 950.0045
ALA 960.0041
LEU 970.0033
SER 980.0032
ASN 990.0025
SER 1000.0024
ILE 1010.0034
MET 1020.0037
TYR 1030.0045
PHE 1040.0050
SER 1050.0059
HIS 1060.0066
PHE 1070.0067
VAL 1080.0073
PRO 1090.0077
VAL 1100.0078
PHE 1110.0083
LEU 1120.0091
PRO 1130.0100
ALA 1140.0101

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.