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***  MHC1  ***

<R2> analysis for 2607180828532135053

---  normal mode 35  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0758
MET 10.0052
SER 20.0034
THR 30.0021
ILE 40.0010
THR 50.0016
LYS 60.0029
ASP 70.0032
GLN 80.0019
ILE 90.0017
LEU 100.0031
GLU 110.0028
GLY 120.0021
VAL 130.0021
ALA 140.0025
ALA 150.0021
LEU 160.0019
SER 170.0018
VAL 180.0014
MET 190.0016
GLU 200.0018
ILE 210.0014
VAL 220.0013
GLU 230.0019
LEU 240.0023
ILE 250.0022
SER 260.0024
ALA 270.0033
MET 280.0034
GLU 290.0037
GLU 300.0044
LYS 310.0050
PHE 320.0051
GLY 330.0054
VAL 340.0049
SER 350.0040
ALA 360.0046
ALA 370.0042
ALA 380.0042
VAL 390.0053
ALA 400.0056
ALA 410.0049
GLY 420.0051
PRO 430.0032
ALA 440.0025
ALA 450.0020
ALA 460.0019
VAL 470.0033
GLU 480.0044
ALA 490.0047
ALA 500.0062
GLU 510.0067
GLU 520.0063
GLN 530.0051
THR 540.0057
GLU 550.0046
PHE 560.0032
ASP 570.0020
VAL 580.0014
VAL 590.0005
LEU 600.0013
ALA 610.0023
SER 620.0031
PHE 630.0034
GLY 640.0044
GLU 650.0053
ASN 660.0045
LYS 670.0039
VAL 680.0035
ALA 690.0030
VAL 700.0024
ILE 710.0021
LYS 720.0015
ALA 730.0012
VAL 740.0005
ARG 750.0008
GLY 760.0006
ALA 770.0013
THR 780.0016
GLY 790.0021
LEU 800.0025
GLY 810.0032
LEU 820.0031
LYS 830.0041
GLU 840.0034
ALA 850.0023
LYS 860.0033
ASP 870.0035
LEU 880.0024
VAL 890.0025
GLU 900.0035
SER 910.0030
ALA 920.0024
PRO 930.0018
ALA 940.0013
VAL 950.0006
LEU 960.0008
LYS 970.0019
GLU 980.0027
GLY 990.0038
VAL 1000.0039
ASN 1010.0050
LYS 1020.0050
ASP 1030.0055
GLU 1040.0044
ALA 1050.0034
GLU 1060.0043
THR 1070.0041
LEU 1080.0027
LYS 1090.0030
LYS 1100.0040
SER 1110.0030
LEU 1120.0025
GLU 1130.0038
GLU 1140.0041
ALA 1150.0034
GLY 1160.0041
ALA 1170.0032
SER 1180.0033
VAL 1190.0024
GLU 1200.0023
ILE 1210.0023
LYS 1220.0016
GLU 1230.0025
ALA 1240.0026
ALA 1250.0022
ALA 1260.0034
LYS 1270.0039
ALA 1280.0030
TYR 1290.0040
LYS 1300.0034
ILE 1310.0039
ILE 1320.0028
SER 1330.0024
LEU 1340.0016
LYS 1350.0010
TYR 1360.0015
THR 1370.0036
ARG 1380.0062
LYS 1390.0087
VAL 1400.0111
CYS 1410.0132
ILE 1420.0172
GLY 1430.0205
PRO 1440.0246
GLY 1450.0289
PRO 1460.0308
GLY 1470.0328
LYS 1480.0317
ALA 1490.0288
TYR 1500.0245
LYS 1510.0218
ILE 1520.0179
ILE 1530.0150
SER 1540.0114
LEU 1550.0082
LYS 1560.0061
TYR 1570.0027
THR 1580.0044
ARG 1590.0053
LYS 1600.0088
VAL 1610.0106
CYS 1620.0144
GLY 1630.0165
PRO 1640.0209
GLY 1650.0238
PRO 1660.0278
GLY 1670.0294
GLY 1680.0261
LYS 1690.0243
ALA 1700.0197
TYR 1710.0176
LYS 1720.0130
ILE 1730.0109
ILE 1740.0064
SER 1750.0063
LEU 1760.0052
LYS 1770.0091
TYR 1780.0113
THR 1790.0151
ARG 1800.0184
LYS 1810.0210
VAL 1820.0247
GLY 1830.0260
PRO 1840.0273
GLY 1850.0237
PRO 1860.0192
GLY 1870.0173
ILE 1880.0135
ILE 1890.0121
SER 1900.0086
LEU 1910.0063
LYS 1920.0044
TYR 1930.0019
THR 1940.0017
ARG 1950.0030
LYS 1960.0044
VAL 1970.0045
CYS 1980.0048
ILE 1990.0044
GLN 2000.0050
LEU 2010.0028
GLY 2020.0027
GLY 2030.0020
PRO 2040.0017
GLY 2050.0023
PRO 2060.0013
GLY 2070.0014
ASN 2080.0013
ILE 2090.0012
LYS 2100.0012
THR 2110.0013
ALA 2120.0014
PHE 2130.0014
HIS 2140.0014
CYS 2150.0015
TYR 2160.0016
ALA 2170.0016
ALA 2180.0015
TYR 2190.0015
MET 2200.0016
THR 2210.0016
SER 2220.0016
ILE 2230.0014
LYS 2240.0014
ALA 2250.0018
CYS 2260.0117
ASP 2270.0203
LEU 2280.0275
LYS 2290.0391
LYS 2300.0490
PRO 2310.0579
LEU 2320.0566
MET 2330.0443
GLU 2340.0446
SER 2350.0361
GLY 2360.0240
TRP 2370.0243
SER 2380.0182
ASP 2390.0218
THR 2400.0229
ALA 2410.0247
HIS 2420.0421
GLY 2430.0348
LYS 2440.0394
LYS 2450.0226
SER 2460.0167
LEU 2470.0182
PRO 2480.0209
SER 2490.0223
SER 2500.0262
SER 2510.0046
SER 2520.0061
TYR 2530.0083
SER 2540.0117
TYR 2550.0150
ARG 2560.0208
ARG 2570.0215
LYS 2580.0263
LEU 2590.0284
THR 2600.0348
ASN 2610.0402
PRO 2620.0489
ALA 2630.0506
ASN 2640.0468
LYS 2650.0400
GLU 2660.0334
GLU 2670.0230
SER 2680.0174
ILE 2690.0136
LYS 2700.0192
LYS 2710.0206
GLN 2720.0261
LYS 2730.0293
TYR 2740.0332
SER 2750.0394
TYR 2760.0442
PRO 2770.0568
TRP 2780.0463
GLN 2790.0259
THR 2800.0384
SER 2810.0427
LYS 2820.0217
CYS 2830.0279
PHE 2840.0751
ASP 2880.0136
TYR 2890.0087
GLN 2900.0097
TYR 2910.0156
CYS 2970.0174
ASN 2980.0131
PRO 2990.0095
GLY 3000.0061
LYS 3010.0048
LYS 3020.0064
ASN 3030.0063
THR 3040.0058
ILE 3050.0061
SER 3060.0070
GLY 3070.0067
TYR 3080.0065
LYS 3090.0066
ARG 3100.0068
MET 3110.0066
MET 3120.0066
ALA 3130.0072
THR 3140.0068
LYS 3150.0064
ASP 3160.0065
SER 3170.0063
PHE 3180.0053
GLN 3190.0047
SER 3200.0036
PHE 3210.0031
ASN 3220.0018
LEU 3230.0010
THR 3240.0019
GLU 3250.0022
PRO 3260.0016
HIS 3270.0029
ILE 3280.0031
THR 3290.0040
THR 3300.0046
ASN 3310.0042
LYS 3320.0038
LEU 3330.0027
GLU 3340.0023
TRP 3350.0017
ILE 3360.0022
ASP 3370.0034
PRO 3380.0030
ASP 3390.0043
GLY 3400.0067
ASN 3410.0078
THR 3420.0112
ARG 3430.0265
GLY 3440.0440
GLY 3450.0595
GLY 3460.0758
GLY 10.0018
SER 20.0016
HIS 30.0015
SER 40.0013
MET 50.0013
ARG 60.0011
TYR 70.0011
PHE 80.0010
PHE 90.0010
THR 100.0010
SER 110.0011
VAL 120.0010
SER 130.0012
ARG 140.0012
PRO 150.0014
GLY 160.0017
ARG 170.0015
GLY 180.0014
GLU 190.0013
PRO 200.0012
ARG 210.0012
PHE 220.0011
ILE 230.0009
ALA 240.0009
VAL 250.0008
GLY 260.0010
TYR 270.0010
VAL 280.0011
ASP 290.0011
ASP 300.0009
THR 310.0009
GLN 320.0008
PHE 330.0008
VAL 340.0009
ARG 350.0009
PHE 360.0010
ASP 370.0010
SER 380.0012
ASP 390.0013
ALA 400.0012
ALA 410.0014
SER 420.0013
GLN 430.0014
ARG 440.0013
MET 450.0011
GLU 460.0010
PRO 470.0008
ARG 480.0007
ALA 490.0007
PRO 500.0007
TRP 510.0010
ILE 520.0010
GLU 530.0008
GLN 540.0010
GLU 550.0012
GLY 560.0013
PRO 570.0014
GLU 580.0016
TYR 590.0014
TRP 600.0013
ASP 610.0015
GLY 620.0016
GLU 630.0014
THR 640.0014
ARG 650.0016
LYS 660.0014
VAL 670.0013
LYS 680.0014
ALA 690.0015
HIS 700.0013
SER 710.0012
GLN 720.0014
THR 730.0014
HIS 740.0012
ARG 750.0013
VAL 760.0012
ASP 770.0011
LEU 780.0011
GLY 790.0011
THR 800.0011
LEU 810.0011
ARG 820.0012
GLY 830.0013
TYR 840.0014
TYR 850.0016
ASN 860.0022
GLN 870.0019
SER 880.0020
GLU 890.0016
ALA 900.0015
GLY 910.0011
SER 920.0010
HIS 930.0011
THR 940.0010
VAL 950.0010
GLN 960.0011
ARG 970.0011
MET 980.0011
TYR 990.0013
GLY 1000.0013
CYS 1010.0015
ASP 1020.0015
VAL 1030.0017
GLY 1040.0018
SER 1050.0019
ASP 1060.0021
TRP 1070.0019
ARG 1080.0021
PHE 1090.0019
LEU 1100.0018
ARG 1110.0016
GLY 1120.0015
TYR 1130.0014
HIS 1140.0014
GLN 1150.0013
TYR 1160.0012
ALA 1170.0012
TYR 1180.0012
ASP 1190.0011
GLY 1200.0011
LYS 1210.0012
ASP 1220.0012
TYR 1230.0013
ILE 1240.0014
ALA 1250.0014
LEU 1260.0015
LYS 1270.0015
GLU 1280.0015
ASP 1290.0017
LEU 1300.0017
ARG 1310.0018
SER 1320.0017
TRP 1330.0016
THR 1340.0015
ALA 1350.0015
ALA 1360.0015
ASP 1370.0015
MET 1380.0015
ALA 1390.0015
ALA 1400.0014
GLN 1410.0016
THR 1420.0016
THR 1430.0015
LYS 1440.0016
HIS 1450.0017
LYS 1460.0017
TRP 1470.0017
GLU 1480.0018
ALA 1490.0019
ALA 1500.0018
HIS 1510.0019
VAL 1520.0018
ALA 1530.0018
GLU 1540.0019
GLN 1550.0018
LEU 1560.0018
ARG 1570.0018
ALA 1580.0020
TYR 1590.0018
LEU 1600.0017
GLU 1610.0019
GLY 1620.0020
THR 1630.0019
CYS 1640.0017
VAL 1650.0018
GLU 1660.0019
TRP 1670.0017
LEU 1680.0016
ARG 1690.0018
ARG 1700.0017
TYR 1710.0014
LEU 1720.0015
GLU 1730.0017
ASN 1740.0015
GLY 1750.0013
LYS 1760.0015
GLU 1770.0014
THR 1780.0012
LEU 1790.0013
GLN 1800.0015
ARG 1810.0016
THR 1820.0016
ASP 1830.0016
ALA 1840.0018
PRO 1850.0017
LYS 1860.0019
THR 1870.0021
HIS 1880.0023
MET 1890.0025
THR 1900.0026
HIS 1910.0030
HIS 1920.0031
ALA 1930.0034
VAL 1940.0032
SER 1950.0037
ASP 1960.0043
HIS 1970.0039
GLU 1980.0033
ALA 1990.0031
THR 2000.0026
LEU 2010.0025
ARG 2020.0022
CYS 2030.0020
TRP 2040.0018
ALA 2050.0016
LEU 2060.0014
SER 2070.0013
PHE 2080.0013
TYR 2090.0012
PRO 2100.0012
ALA 2110.0010
GLU 2120.0012
ILE 2130.0013
THR 2140.0014
LEU 2150.0015
THR 2160.0016
TRP 2170.0019
GLN 2180.0022
ARG 2190.0024
ASP 2200.0027
GLY 2210.0025
GLU 2220.0020
ASP 2230.0016
GLN 2240.0014
THR 2250.0010
GLN 2260.0009
ASP 2270.0013
THR 2280.0013
GLU 2290.0012
LEU 2300.0011
VAL 2310.0011
GLU 2320.0009
THR 2330.0009
ARG 2340.0008
PRO 2350.0008
ALA 2360.0009
GLY 2370.0008
ASP 2380.0008
GLY 2390.0008
THR 2400.0009
PHE 2410.0010
GLN 2420.0011
LYS 2430.0012
TRP 2440.0015
ALA 2450.0016
ALA 2460.0018
VAL 2470.0020
VAL 2480.0024
VAL 2490.0027
PRO 2500.0032
SER 2510.0036
GLY 2520.0038
GLN 2530.0034
GLU 2540.0033
GLN 2550.0035
ARG 2560.0031
TYR 2570.0027
THR 2580.0026
CYS 2590.0023
HIS 2600.0022
VAL 2610.0019
GLN 2620.0019
HIS 2630.0017
GLU 2640.0019
GLY 2650.0019
LEU 2660.0023
PRO 2670.0027
LYS 2680.0027
PRO 2690.0025
LEU 2700.0025
THR 2710.0028
LEU 2720.0028
ARG 2730.0031
TRP 2740.0032
GLU 2750.0036
PRO 2760.0039
GLN 2780.0008
ARG 2790.0008
THR 2800.0010
PRO 2810.0011
LYS 2820.0013
ILE 2830.0015
GLN 2840.0015
VAL 2850.0016
TYR 2860.0015
SER 2870.0013
ARG 2880.0011
HIS 2890.0012
PRO 2900.0015
ALA 2910.0016
GLU 2920.0017
ASN 2930.0019
GLY 2940.0018
LYS 2950.0015
SER 2960.0013
ASN 2970.0013
PHE 2980.0013
LEU 2990.0015
ASN 3000.0013
CYS 3010.0013
TYR 3020.0011
VAL 3030.0011
SER 3040.0009
GLY 3050.0009
PHE 3060.0008
HIS 3070.0008
PRO 3080.0008
SER 3090.0009
ASP 3100.0012
ILE 3110.0013
GLU 3120.0017
VAL 3130.0018
ASP 3140.0020
LEU 3150.0020
LEU 3160.0023
LYS 3170.0025
ASN 3180.0028
GLY 3190.0029
GLU 3200.0028
ARG 3210.0025
ILE 3220.0023
GLU 3230.0023
LYS 3240.0020
VAL 3250.0017
GLU 3260.0014
HIS 3270.0011
SER 3280.0008
ASP 3290.0008
LEU 3300.0008
SER 3310.0008
PHE 3320.0008
SER 3330.0008
LYS 3340.0009
ASP 3350.0008
TRP 3360.0008
SER 3370.0007
PHE 3380.0007
TYR 3390.0008
LEU 3400.0009
LEU 3410.0010
TYR 3420.0012
TYR 3430.0013
THR 3440.0015
GLU 3450.0014
PHE 3460.0016
THR 3470.0017
PRO 3480.0019
THR 3490.0022
GLU 3500.0025
LYS 3510.0028
ASP 3520.0026
GLU 3530.0026
TYR 3540.0023
ALA 3550.0022
CYS 3560.0020
ARG 3570.0022
VAL 3580.0019
ASN 3590.0018
HIS 3600.0014
VAL 3610.0013
THR 3620.0013
LEU 3630.0018
SER 3640.0022
GLN 3650.0023
PRO 3660.0023
LYS 3670.0022
ILE 3680.0024
VAL 3690.0022
LYS 3700.0023
TRP 3710.0021
ASP 3720.0022
ARG 3730.0019
ASP 3740.0022
MET 3750.0022
SER 10.0008
GLN 20.0007
PHE 30.0008
ARG 40.0010
VAL 50.0012
SER 60.0011
PRO 70.0012
LEU 80.0012
ASP 90.0012
ARG 100.0013
THR 110.0012
TRP 120.0015
ASN 130.0017
LEU 140.0019
GLY 150.0021
GLU 160.0017
THR 170.0016
VAL 180.0015
GLU 190.0014
LEU 200.0012
LYS 210.0012
CYS 220.0010
GLN 230.0009
VAL 240.0007
LEU 250.0007
LEU 260.0005
SER 270.0005
ASN 280.0006
PRO 290.0006
THR 300.0007
SER 310.0005
GLY 320.0007
CYS 330.0007
SER 340.0008
TRP 350.0011
LEU 360.0012
PHE 370.0014
GLN 380.0016
PRO 390.0018
ARG 400.0020
GLY 410.0025
ALA 420.0025
ALA 430.0022
ALA 440.0020
SER 450.0016
PRO 460.0013
THR 470.0013
PHE 480.0011
LEU 490.0013
LEU 500.0012
TYR 510.0010
LEU 520.0011
SER 530.0011
GLN 540.0013
ASN 550.0015
LYS 560.0015
PRO 570.0014
LYS 580.0012
ALA 590.0013
ALA 600.0012
GLU 610.0013
GLY 620.0014
LEU 630.0015
ASP 640.0016
THR 650.0015
GLN 660.0017
ARG 670.0017
PHE 680.0015
SER 690.0013
GLY 700.0012
LYS 710.0013
ARG 720.0012
LEU 730.0012
GLY 740.0011
ASP 750.0009
THR 760.0010
PHE 770.0010
VAL 780.0012
LEU 790.0013
THR 800.0014
LEU 810.0015
SER 820.0018
ASP 830.0021
PHE 840.0019
ARG 850.0021
ARG 860.0022
GLU 870.0022
ASN 880.0019
GLU 890.0018
GLY 900.0017
TYR 910.0015
TYR 920.0013
PHE 930.0011
CYS 940.0008
SER 950.0007
ALA 960.0005
LEU 970.0004
SER 980.0005
ASN 990.0009
SER 1000.0008
ILE 1010.0006
MET 1020.0004
TYR 1030.0005
PHE 1040.0008
SER 1050.0010
HIS 1060.0011
PHE 1070.0013
VAL 1080.0013
PRO 1090.0014
VAL 1100.0015
PHE 1110.0015
LEU 1120.0014
PRO 1130.0008
ALA 1140.0011
SER 10.0013
GLN 20.0009
PHE 30.0008
ARG 40.0010
VAL 50.0012
SER 60.0016
PRO 70.0020
LEU 80.0021
ASP 90.0025
ARG 100.0027
THR 110.0030
TRP 120.0032
ASN 130.0036
LEU 140.0038
GLY 150.0038
GLU 160.0034
THR 170.0030
VAL 180.0026
GLU 190.0022
LEU 200.0017
LYS 210.0013
CYS 220.0009
GLN 230.0006
VAL 240.0004
LEU 250.0006
LEU 260.0008
SER 270.0011
ASN 280.0012
PRO 290.0009
THR 300.0011
SER 310.0009
GLY 320.0008
CYS 330.0007
SER 340.0007
TRP 350.0010
LEU 360.0011
PHE 370.0015
GLN 380.0017
PRO 390.0022
ARG 400.0025
GLY 410.0022
ALA 420.0021
ALA 430.0018
ALA 440.0017
SER 450.0013
PRO 460.0013
THR 470.0013
PHE 480.0010
LEU 490.0013
LEU 500.0012
TYR 510.0011
LEU 520.0012
SER 530.0013
GLN 540.0018
ASN 550.0020
LYS 560.0021
PRO 570.0017
LYS 580.0015
ALA 590.0016
ALA 600.0014
GLU 610.0014
GLY 620.0019
LEU 630.0021
ASP 640.0027
THR 650.0027
GLN 660.0031
ARG 670.0029
PHE 680.0024
SER 690.0022
GLY 700.0018
LYS 710.0017
ARG 720.0014
LEU 730.0014
GLY 740.0012
ASP 750.0008
THR 760.0009
PHE 770.0011
VAL 780.0015
LEU 790.0017
THR 800.0022
LEU 810.0026
SER 820.0030
ASP 830.0034
PHE 840.0032
ARG 850.0034
ARG 860.0035
GLU 870.0031
ASN 880.0027
GLU 890.0028
GLY 900.0024
TYR 910.0020
TYR 920.0016
PHE 930.0012
CYS 940.0008
SER 950.0006
ALA 960.0005
LEU 970.0006
SER 980.0008
ASN 990.0010
SER 1000.0009
ILE 1010.0009
MET 1020.0007
TYR 1030.0008
PHE 1040.0009
SER 1050.0010
HIS 1060.0015
PHE 1070.0017
VAL 1080.0018
PRO 1090.0023
VAL 1100.0025
PHE 1110.0030
LEU 1120.0035
PRO 1130.0037
ALA 1140.0041

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.