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***  MHC1  ***

<R2> analysis for 2607180828532135053

---  normal mode 38  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1590
MET 10.0675
SER 20.0516
THR 30.0438
ILE 40.0302
THR 50.0199
LYS 60.0122
ASP 70.0114
GLN 80.0132
ILE 90.0180
LEU 100.0183
GLU 110.0187
GLY 120.0188
VAL 130.0193
ALA 140.0206
ALA 150.0219
LEU 160.0156
SER 170.0094
VAL 180.0097
MET 190.0080
GLU 200.0076
ILE 210.0026
VAL 220.0130
GLU 230.0177
LEU 240.0135
ILE 250.0123
SER 260.0252
ALA 270.0285
MET 280.0209
GLU 290.0238
GLU 300.0365
LYS 310.0367
PHE 320.0292
GLY 330.0304
VAL 340.0186
SER 350.0189
ALA 360.0171
ALA 370.0200
ALA 380.0113
VAL 390.0118
ALA 400.0205
ALA 410.0188
GLY 420.0200
PRO 430.0187
ALA 440.0209
ALA 450.0132
ALA 460.0091
VAL 470.0098
GLU 480.0066
ALA 490.0017
ALA 500.0039
GLU 510.0041
GLU 520.0049
GLN 530.0054
THR 540.0033
GLU 550.0038
PHE 560.0056
ASP 570.0060
VAL 580.0066
VAL 590.0088
LEU 600.0096
ALA 610.0137
SER 620.0142
PHE 630.0128
GLY 640.0172
GLU 650.0187
ASN 660.0167
LYS 670.0119
VAL 680.0122
ALA 690.0150
VAL 700.0117
ILE 710.0085
LYS 720.0125
ALA 730.0128
VAL 740.0079
ARG 750.0097
GLY 760.0135
ALA 770.0105
THR 780.0079
GLY 790.0120
LEU 800.0098
GLY 810.0113
LEU 820.0091
LYS 830.0070
GLU 840.0063
ALA 850.0039
LYS 860.0022
ASP 870.0039
LEU 880.0038
VAL 890.0054
GLU 900.0071
SER 910.0093
ALA 920.0099
PRO 930.0109
ALA 940.0084
VAL 950.0068
LEU 960.0034
LYS 970.0024
GLU 980.0040
GLY 990.0033
VAL 1000.0033
ASN 1010.0055
LYS 1020.0087
ASP 1030.0118
GLU 1040.0099
ALA 1050.0086
GLU 1060.0134
THR 1070.0145
LEU 1080.0113
LYS 1090.0133
LYS 1100.0175
SER 1110.0164
LEU 1120.0140
GLU 1130.0180
GLU 1140.0207
ALA 1150.0176
GLY 1160.0187
ALA 1170.0149
SER 1180.0164
VAL 1190.0133
GLU 1200.0138
ILE 1210.0108
LYS 1220.0109
GLU 1230.0094
ALA 1240.0079
ALA 1250.0110
ALA 1260.0104
LYS 1270.0101
ALA 1280.0096
TYR 1290.0101
LYS 1300.0096
ILE 1310.0108
ILE 1320.0111
SER 1330.0107
LEU 1340.0109
LYS 1350.0107
TYR 1360.0120
THR 1370.0122
ARG 1380.0124
LYS 1390.0129
VAL 1400.0130
CYS 1410.0149
ILE 1420.0148
GLY 1430.0166
PRO 1440.0167
GLY 1450.0185
PRO 1460.0192
GLY 1470.0170
LYS 1480.0147
ALA 1490.0128
TYR 1500.0123
LYS 1510.0114
ILE 1520.0111
ILE 1530.0107
SER 1540.0105
LEU 1550.0103
LYS 1560.0100
TYR 1570.0103
THR 1580.0100
ARG 1590.0102
LYS 1600.0100
VAL 1610.0105
CYS 1620.0100
GLY 1630.0107
PRO 1640.0110
GLY 1650.0101
PRO 1660.0102
GLY 1670.0110
GLY 1680.0120
LYS 1690.0115
ALA 1700.0115
TYR 1710.0102
LYS 1720.0106
ILE 1730.0099
ILE 1740.0105
SER 1750.0101
LEU 1760.0102
LYS 1770.0102
TYR 1780.0103
THR 1790.0102
ARG 1800.0104
LYS 1810.0106
VAL 1820.0106
GLY 1830.0112
PRO 1840.0124
GLY 1850.0140
PRO 1860.0146
GLY 1870.0130
ILE 1880.0132
ILE 1890.0118
SER 1900.0118
LEU 1910.0108
LYS 1920.0106
TYR 1930.0106
THR 1940.0106
ARG 1950.0107
LYS 1960.0101
VAL 1970.0102
CYS 1980.0103
ILE 1990.0105
GLN 2000.0106
LEU 2010.0088
GLY 2020.0084
GLY 2030.0076
PRO 2040.0060
GLY 2050.0052
PRO 2060.0030
GLY 2070.0033
ASN 2080.0035
ILE 2090.0033
LYS 2100.0034
THR 2110.0017
ALA 2120.0024
PHE 2130.0024
HIS 2140.0014
CYS 2150.0007
TYR 2160.0007
ALA 2170.0016
ALA 2180.0023
TYR 2190.0019
MET 2200.0019
THR 2210.0036
SER 2220.0038
ILE 2230.0035
LYS 2240.0043
ALA 2250.0040
CYS 2260.0035
ASP 2270.0032
LEU 2280.0029
LYS 2290.0034
LYS 2300.0043
PRO 2310.0068
LEU 2320.0086
MET 2330.0074
GLU 2340.0092
SER 2350.0098
GLY 2360.0065
TRP 2370.0051
SER 2380.0055
ASP 2390.0043
THR 2400.0055
ALA 2410.0051
HIS 2420.0070
GLY 2430.0040
LYS 2440.0030
LYS 2450.0041
SER 2460.0061
LEU 2470.0051
PRO 2480.0069
SER 2490.0071
SER 2500.0053
SER 2510.0013
SER 2520.0012
TYR 2530.0011
SER 2540.0016
TYR 2550.0013
ARG 2560.0016
ARG 2570.0014
LYS 2580.0014
LEU 2590.0010
THR 2600.0015
ASN 2610.0013
PRO 2620.0016
ALA 2630.0031
ASN 2640.0037
LYS 2650.0040
GLU 2660.0029
GLU 2670.0023
SER 2680.0015
ILE 2690.0006
LYS 2700.0002
LYS 2710.0010
GLN 2720.0019
LYS 2730.0024
TYR 2740.0030
SER 2750.0037
TYR 2760.0044
PRO 2770.0052
TRP 2780.0044
GLN 2790.0033
THR 2800.0041
SER 2810.0042
LYS 2820.0015
CYS 2830.0019
PHE 2840.0058
ASP 2880.0021
TYR 2890.0024
GLN 2900.0040
TYR 2910.0074
CYS 2970.0263
ASN 2980.0185
PRO 2990.0136
GLY 3000.0082
LYS 3010.0089
LYS 3020.0135
ASN 3030.0119
THR 3040.0094
ILE 3050.0097
SER 3060.0097
GLY 3070.0098
TYR 3080.0085
LYS 3090.0092
ARG 3100.0105
MET 3110.0096
MET 3120.0092
ALA 3130.0108
THR 3140.0102
LYS 3150.0089
ASP 3160.0094
SER 3170.0088
PHE 3180.0072
GLN 3190.0066
SER 3200.0056
PHE 3210.0049
ASN 3220.0055
LEU 3230.0049
THR 3240.0051
GLU 3250.0048
PRO 3260.0041
HIS 3270.0035
ILE 3280.0034
THR 3290.0026
THR 3300.0030
ASN 3310.0028
LYS 3320.0021
LEU 3330.0024
GLU 3340.0024
TRP 3350.0032
ILE 3360.0037
ASP 3370.0024
PRO 3380.0072
ASP 3390.0061
GLY 3400.0007
ASN 3410.0058
THR 3420.0137
ARG 3430.0438
GLY 3440.0876
GLY 3450.1205
GLY 3460.1590
GLY 10.0104
SER 20.0094
HIS 30.0082
SER 40.0067
MET 50.0060
ARG 60.0044
TYR 70.0036
PHE 80.0023
PHE 90.0025
THR 100.0030
SER 110.0041
VAL 120.0052
SER 130.0060
ARG 140.0075
PRO 150.0082
GLY 160.0091
ARG 170.0088
GLY 180.0081
GLU 190.0069
PRO 200.0061
ARG 210.0067
PHE 220.0054
ILE 230.0050
ALA 240.0044
VAL 250.0046
GLY 260.0053
TYR 270.0051
VAL 280.0063
ASP 290.0055
ASP 300.0041
THR 310.0054
GLN 320.0054
PHE 330.0072
VAL 340.0073
ARG 350.0068
PHE 360.0071
ASP 370.0075
SER 380.0080
ASP 390.0094
ALA 400.0102
ALA 410.0122
SER 420.0120
GLN 430.0107
ARG 440.0103
MET 450.0091
GLU 460.0096
PRO 470.0094
ARG 480.0082
ALA 490.0087
PRO 500.0105
TRP 510.0109
ILE 520.0106
GLU 530.0119
GLN 540.0134
GLU 550.0130
GLY 560.0144
PRO 570.0143
GLU 580.0138
TYR 590.0121
TRP 600.0115
ASP 610.0119
GLY 620.0107
GLU 630.0091
THR 640.0094
ARG 650.0092
LYS 660.0071
VAL 670.0063
LYS 680.0069
ALA 690.0056
HIS 700.0041
SER 710.0046
GLN 720.0043
THR 730.0025
HIS 740.0028
ARG 750.0043
VAL 760.0035
ASP 770.0029
LEU 780.0043
GLY 790.0050
THR 800.0043
LEU 810.0046
ARG 820.0060
GLY 830.0064
TYR 840.0061
TYR 850.0070
ASN 860.0087
GLN 870.0085
SER 880.0091
GLU 890.0089
ALA 900.0092
GLY 910.0083
SER 920.0069
HIS 930.0055
THR 940.0040
VAL 950.0027
GLN 960.0016
ARG 970.0010
MET 980.0019
TYR 990.0032
GLY 1000.0046
CYS 1010.0062
ASP 1020.0074
VAL 1030.0093
GLY 1040.0107
SER 1050.0119
ASP 1060.0132
TRP 1070.0115
ARG 1080.0113
PHE 1090.0096
LEU 1100.0094
ARG 1110.0072
GLY 1120.0058
TYR 1130.0045
HIS 1140.0031
GLN 1150.0026
TYR 1160.0019
ALA 1170.0023
TYR 1180.0033
ASP 1190.0039
GLY 1200.0031
LYS 1210.0033
ASP 1220.0034
TYR 1230.0036
ILE 1240.0036
ALA 1250.0035
LEU 1260.0040
LYS 1270.0052
GLU 1280.0058
ASP 1290.0066
LEU 1300.0056
ARG 1310.0061
SER 1320.0058
TRP 1330.0049
THR 1340.0050
ALA 1350.0051
ALA 1360.0050
ASP 1370.0054
MET 1380.0061
ALA 1390.0054
ALA 1400.0047
GLN 1410.0055
THR 1420.0051
THR 1430.0040
LYS 1440.0046
HIS 1450.0051
LYS 1460.0037
TRP 1470.0034
GLU 1480.0046
ALA 1490.0042
ALA 1500.0031
HIS 1510.0038
VAL 1520.0029
ALA 1530.0042
GLU 1540.0049
GLN 1550.0041
LEU 1560.0038
ARG 1570.0055
ALA 1580.0060
TYR 1590.0057
LEU 1600.0062
GLU 1610.0081
GLY 1620.0087
THR 1630.0081
CYS 1640.0074
VAL 1650.0091
GLU 1660.0108
TRP 1670.0099
LEU 1680.0092
ARG 1690.0110
ARG 1700.0115
TYR 1710.0103
LEU 1720.0104
GLU 1730.0124
ASN 1740.0123
GLY 1750.0107
LYS 1760.0113
GLU 1770.0104
THR 1780.0084
LEU 1790.0081
GLN 1800.0094
ARG 1810.0067
THR 1820.0057
ASP 1830.0040
ALA 1840.0043
PRO 1850.0035
LYS 1860.0045
THR 1870.0057
HIS 1880.0069
MET 1890.0080
THR 1900.0087
HIS 1910.0108
HIS 1920.0114
ALA 1930.0127
VAL 1940.0122
SER 1950.0139
ASP 1960.0161
HIS 1970.0145
GLU 1980.0124
ALA 1990.0117
THR 2000.0098
LEU 2010.0094
ARG 2020.0078
CYS 2030.0069
TRP 2040.0055
ALA 2050.0043
LEU 2060.0027
SER 2070.0021
PHE 2080.0029
TYR 2090.0036
PRO 2100.0041
ALA 2110.0026
GLU 2120.0035
ILE 2130.0041
THR 2140.0051
LEU 2150.0056
THR 2160.0061
TRP 2170.0072
GLN 2180.0079
ARG 2190.0089
ASP 2200.0097
GLY 2210.0086
GLU 2220.0071
ASP 2230.0059
GLN 2240.0057
THR 2250.0040
GLN 2260.0041
ASP 2270.0055
THR 2280.0058
GLU 2290.0061
LEU 2300.0058
VAL 2310.0052
GLU 2320.0038
THR 2330.0028
ARG 2340.0020
PRO 2350.0015
ALA 2360.0023
GLY 2370.0036
ASP 2380.0040
GLY 2390.0038
THR 2400.0026
PHE 2410.0017
GLN 2420.0025
LYS 2430.0037
TRP 2440.0052
ALA 2450.0065
ALA 2460.0075
VAL 2470.0080
VAL 2480.0093
VAL 2490.0103
PRO 2500.0117
SER 2510.0135
GLY 2520.0142
GLN 2530.0126
GLU 2540.0119
GLN 2550.0126
ARG 2560.0114
TYR 2570.0100
THR 2580.0094
CYS 2590.0080
HIS 2600.0072
VAL 2610.0061
GLN 2620.0062
HIS 2630.0052
GLU 2640.0060
GLY 2650.0051
LEU 2660.0062
PRO 2670.0078
LYS 2680.0086
PRO 2690.0082
LEU 2700.0076
THR 2710.0090
LEU 2720.0092
ARG 2730.0107
TRP 2740.0110
GLU 2750.0127
PRO 2760.0133
GLN 2780.0072
ARG 2790.0059
THR 2800.0066
PRO 2810.0056
LYS 2820.0056
ILE 2830.0065
GLN 2840.0057
VAL 2850.0062
TYR 2860.0050
SER 2870.0046
ARG 2880.0036
HIS 2890.0032
PRO 2900.0031
ALA 2910.0048
GLU 2920.0055
ASN 2930.0076
GLY 2940.0088
LYS 2950.0077
SER 2960.0081
ASN 2970.0067
PHE 2980.0063
LEU 2990.0066
ASN 3000.0054
CYS 3010.0057
TYR 3020.0043
VAL 3030.0046
SER 3040.0038
GLY 3050.0042
PHE 3060.0048
HIS 3070.0046
PRO 3080.0049
SER 3090.0046
ASP 3100.0061
ILE 3110.0068
GLU 3120.0079
VAL 3130.0084
ASP 3140.0098
LEU 3150.0096
LEU 3160.0114
LYS 3170.0123
ASN 3180.0139
GLY 3190.0142
GLU 3200.0145
ARG 3210.0132
ILE 3220.0123
GLU 3230.0128
LYS 3240.0118
VAL 3250.0097
GLU 3260.0084
HIS 3270.0064
SER 3280.0051
ASP 3290.0051
LEU 3300.0041
SER 3310.0023
PHE 3320.0013
SER 3330.0022
LYS 3340.0026
ASP 3350.0032
TRP 3360.0025
SER 3370.0031
PHE 3380.0028
TYR 3390.0028
LEU 3400.0038
LEU 3410.0042
TYR 3420.0060
TYR 3430.0068
THR 3440.0084
GLU 3450.0087
PHE 3460.0090
THR 3470.0090
PRO 3480.0086
THR 3490.0099
GLU 3500.0103
LYS 3510.0124
ASP 3520.0120
GLU 3530.0116
TYR 3540.0102
ALA 3550.0099
CYS 3560.0090
ARG 3570.0102
VAL 3580.0087
ASN 3590.0089
HIS 3600.0081
VAL 3610.0083
THR 3620.0085
LEU 3630.0091
SER 3640.0096
GLN 3650.0099
PRO 3660.0099
LYS 3670.0100
ILE 3680.0113
VAL 3690.0099
LYS 3700.0100
TRP 3710.0082
ASP 3720.0079
ARG 3730.0058
ASP 3740.0064
MET 3750.0070
SER 10.0029
GLN 20.0032
PHE 30.0028
ARG 40.0027
VAL 50.0022
SER 60.0028
PRO 70.0028
LEU 80.0017
ASP 90.0020
ARG 100.0026
THR 110.0037
TRP 120.0049
ASN 130.0059
LEU 140.0070
GLY 150.0076
GLU 160.0069
THR 170.0064
VAL 180.0052
GLU 190.0047
LEU 200.0035
LYS 210.0029
CYS 220.0026
GLN 230.0032
VAL 240.0033
LEU 250.0039
LEU 260.0045
SER 270.0048
ASN 280.0050
PRO 290.0047
THR 300.0049
SER 310.0034
GLY 320.0034
CYS 330.0025
SER 340.0018
TRP 350.0025
LEU 360.0029
PHE 370.0042
GLN 380.0047
PRO 390.0061
ARG 400.0062
GLY 410.0093
ALA 420.0108
ALA 430.0112
ALA 440.0093
SER 450.0083
PRO 460.0051
THR 470.0052
PHE 480.0044
LEU 490.0049
LEU 500.0045
TYR 510.0032
LEU 520.0038
SER 530.0041
GLN 540.0051
ASN 550.0053
LYS 560.0065
PRO 570.0057
LYS 580.0053
ALA 590.0058
ALA 600.0057
GLU 610.0079
GLY 620.0087
LEU 630.0077
ASP 640.0082
THR 650.0082
GLN 660.0089
ARG 670.0079
PHE 680.0065
SER 690.0062
GLY 700.0052
LYS 710.0048
ARG 720.0045
LEU 730.0054
GLY 740.0054
ASP 750.0043
THR 760.0043
PHE 770.0037
VAL 780.0042
LEU 790.0042
THR 800.0054
LEU 810.0063
SER 820.0074
ASP 830.0079
PHE 840.0068
ARG 850.0073
ARG 860.0067
GLU 870.0072
ASN 880.0065
GLU 890.0056
GLY 900.0050
TYR 910.0032
TYR 920.0028
PHE 930.0014
CYS 940.0012
SER 950.0008
ALA 960.0026
LEU 970.0036
SER 980.0050
ASN 990.0060
SER 1000.0050
ILE 1010.0052
MET 1020.0034
TYR 1030.0034
PHE 1040.0021
SER 1050.0016
HIS 1060.0011
PHE 1070.0010
VAL 1080.0018
PRO 1090.0025
VAL 1100.0039
PHE 1110.0044
LEU 1120.0048
PRO 1130.0043
ALA 1140.0041
SER 10.0112
GLN 20.0097
PHE 30.0100
ARG 40.0123
VAL 50.0128
SER 60.0157
PRO 70.0179
LEU 80.0186
ASP 90.0218
ARG 100.0221
THR 110.0226
TRP 120.0229
ASN 130.0252
LEU 140.0255
GLY 150.0256
GLU 160.0240
THR 170.0212
VAL 180.0187
GLU 190.0166
LEU 200.0143
LYS 210.0122
CYS 220.0103
GLN 230.0097
VAL 240.0075
LEU 250.0092
LEU 260.0075
SER 270.0083
ASN 280.0059
PRO 290.0040
THR 300.0015
SER 310.0012
GLY 320.0024
CYS 330.0040
SER 340.0049
TRP 350.0074
LEU 360.0072
PHE 370.0091
GLN 380.0089
PRO 390.0112
ARG 400.0125
GLY 410.0085
ALA 420.0061
ALA 430.0032
ALA 440.0049
SER 450.0036
PRO 460.0055
THR 470.0068
PHE 480.0064
LEU 490.0085
LEU 500.0078
TYR 510.0060
LEU 520.0058
SER 530.0043
GLN 540.0050
ASN 550.0077
LYS 560.0094
PRO 570.0087
LYS 580.0086
ALA 590.0096
ALA 600.0091
GLU 610.0112
GLY 620.0139
LEU 630.0134
ASP 640.0168
THR 650.0162
GLN 660.0191
ARG 670.0184
PHE 680.0153
SER 690.0136
GLY 700.0111
LYS 710.0099
ARG 720.0076
LEU 730.0086
GLY 740.0068
ASP 750.0068
THR 760.0089
PHE 770.0085
VAL 780.0112
LEU 790.0122
THR 800.0151
LEU 810.0171
SER 820.0202
ASP 830.0226
PHE 840.0213
ARG 850.0220
ARG 860.0216
GLU 870.0189
ASN 880.0171
GLU 890.0173
GLY 900.0145
TYR 910.0121
TYR 920.0110
PHE 930.0090
CYS 940.0070
SER 950.0043
ALA 960.0029
LEU 970.0022
SER 980.0034
ASN 990.0043
SER 1000.0038
ILE 1010.0045
MET 1020.0034
TYR 1030.0051
PHE 1040.0061
SER 1050.0082
HIS 1060.0113
PHE 1070.0119
VAL 1080.0139
PRO 1090.0158
VAL 1100.0170
PHE 1110.0197
LEU 1120.0232
PRO 1130.0258
ALA 1140.0264

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.