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***  MHC1  ***

<R2> analysis for 2607180828532135053

---  normal mode 85  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0469
MET 10.0054
SER 20.0040
THR 30.0052
ILE 40.0037
THR 50.0058
LYS 60.0052
ASP 70.0045
GLN 80.0041
ILE 90.0038
LEU 100.0042
GLU 110.0039
GLY 120.0055
VAL 130.0063
ALA 140.0058
ALA 150.0066
LEU 160.0041
SER 170.0024
VAL 180.0071
MET 190.0064
GLU 200.0013
ILE 210.0047
VAL 220.0055
GLU 230.0012
LEU 240.0043
ILE 250.0068
SER 260.0030
ALA 270.0038
MET 280.0065
GLU 290.0043
GLU 300.0027
LYS 310.0062
PHE 320.0064
GLY 330.0036
VAL 340.0053
SER 350.0057
ALA 360.0074
ALA 370.0052
ALA 380.0021
VAL 390.0047
ALA 400.0023
ALA 410.0099
GLY 420.0122
PRO 430.0128
ALA 440.0114
ALA 450.0077
ALA 460.0118
VAL 470.0124
GLU 480.0270
ALA 490.0315
ALA 500.0180
GLU 510.0037
GLU 520.0019
GLN 530.0008
THR 540.0044
GLU 550.0064
PHE 560.0067
ASP 570.0070
VAL 580.0070
VAL 590.0076
LEU 600.0077
ALA 610.0090
SER 620.0085
PHE 630.0063
GLY 640.0078
GLU 650.0076
ASN 660.0060
LYS 670.0035
VAL 680.0025
ALA 690.0047
VAL 700.0037
ILE 710.0014
LYS 720.0040
ALA 730.0044
VAL 740.0020
ARG 750.0028
GLY 760.0042
ALA 770.0028
THR 780.0023
GLY 790.0043
LEU 800.0061
GLY 810.0086
LEU 820.0073
LYS 830.0089
GLU 840.0086
ALA 850.0046
LYS 860.0046
ASP 870.0070
LEU 880.0068
VAL 890.0055
GLU 900.0065
SER 910.0068
ALA 920.0070
PRO 930.0075
ALA 940.0076
VAL 950.0081
LEU 960.0067
LYS 970.0065
GLU 980.0069
GLY 990.0068
VAL 1000.0064
ASN 1010.0061
LYS 1020.0067
ASP 1030.0062
GLU 1040.0057
ALA 1050.0065
GLU 1060.0077
THR 1070.0063
LEU 1080.0056
LYS 1090.0076
LYS 1100.0081
SER 1110.0070
LEU 1120.0067
GLU 1130.0094
GLU 1140.0096
ALA 1150.0077
GLY 1160.0082
ALA 1170.0077
SER 1180.0092
VAL 1190.0087
GLU 1200.0100
ILE 1210.0071
LYS 1220.0066
GLU 1230.0054
ALA 1240.0056
ALA 1250.0060
ALA 1260.0029
LYS 1270.0044
ALA 1280.0053
TYR 1290.0065
LYS 1300.0084
ILE 1310.0122
ILE 1320.0103
SER 1330.0082
LEU 1340.0060
LYS 1350.0045
TYR 1360.0047
THR 1370.0076
ARG 1380.0121
LYS 1390.0152
VAL 1400.0186
CYS 1410.0187
ILE 1420.0143
GLY 1430.0102
PRO 1440.0044
GLY 1450.0036
PRO 1460.0323
GLY 1470.0369
LYS 1480.0251
ALA 1490.0109
TYR 1500.0094
LYS 1510.0091
ILE 1520.0081
ILE 1530.0075
SER 1540.0062
LEU 1550.0066
LYS 1560.0049
TYR 1570.0062
THR 1580.0073
ARG 1590.0096
LYS 1600.0116
VAL 1610.0139
CYS 1620.0109
GLY 1630.0097
PRO 1640.0092
GLY 1650.0090
PRO 1660.0157
GLY 1670.0203
GLY 1680.0181
LYS 1690.0159
ALA 1700.0129
TYR 1710.0100
LYS 1720.0094
ILE 1730.0093
ILE 1740.0098
SER 1750.0111
LEU 1760.0078
LYS 1770.0057
TYR 1780.0059
THR 1790.0055
ARG 1800.0075
LYS 1810.0090
VAL 1820.0059
GLY 1830.0058
PRO 1840.0068
GLY 1850.0092
PRO 1860.0088
GLY 1870.0082
ILE 1880.0111
ILE 1890.0111
SER 1900.0125
LEU 1910.0079
LYS 1920.0039
TYR 1930.0031
THR 1940.0045
ARG 1950.0074
LYS 1960.0115
VAL 1970.0109
CYS 1980.0098
ILE 1990.0096
GLN 2000.0087
LEU 2010.0066
GLY 2020.0053
GLY 2030.0031
PRO 2040.0024
GLY 2050.0023
PRO 2060.0024
GLY 2070.0034
ASN 2080.0055
ILE 2090.0066
LYS 2100.0065
THR 2110.0073
ALA 2120.0081
PHE 2130.0080
HIS 2140.0070
CYS 2150.0073
TYR 2160.0078
ALA 2170.0061
ALA 2180.0053
TYR 2190.0057
MET 2200.0042
THR 2210.0036
SER 2220.0043
ILE 2230.0054
LYS 2240.0059
ALA 2250.0071
CYS 2260.0072
ASP 2270.0075
LEU 2280.0070
LYS 2290.0051
LYS 2300.0084
PRO 2310.0051
LEU 2320.0030
MET 2330.0021
GLU 2340.0062
SER 2350.0088
GLY 2360.0039
TRP 2370.0013
SER 2380.0016
ASP 2390.0034
THR 2400.0058
ALA 2410.0209
HIS 2420.0123
GLY 2430.0109
LYS 2440.0057
LYS 2450.0065
SER 2460.0041
LEU 2470.0033
PRO 2480.0028
SER 2490.0028
SER 2500.0026
SER 2510.0026
SER 2520.0021
TYR 2530.0020
SER 2540.0034
TYR 2550.0038
ARG 2560.0041
ARG 2570.0042
LYS 2580.0029
LEU 2590.0034
THR 2600.0025
ASN 2610.0030
PRO 2620.0034
ALA 2630.0034
ASN 2640.0023
LYS 2650.0023
GLU 2660.0015
GLU 2670.0025
SER 2680.0014
ILE 2690.0027
LYS 2700.0019
LYS 2710.0018
GLN 2720.0022
LYS 2730.0016
TYR 2740.0022
SER 2750.0017
TYR 2760.0015
PRO 2770.0010
TRP 2780.0004
GLN 2790.0006
THR 2800.0006
SER 2810.0014
LYS 2820.0011
CYS 2830.0011
PHE 2840.0009
ASP 2880.0056
TYR 2890.0037
GLN 2900.0041
TYR 2910.0104
CYS 2970.0273
ASN 2980.0218
PRO 2990.0181
GLY 3000.0117
LYS 3010.0101
LYS 3020.0105
ASN 3030.0087
THR 3040.0200
ILE 3050.0123
SER 3060.0213
GLY 3070.0275
TYR 3080.0225
LYS 3090.0084
ARG 3100.0124
MET 3110.0169
MET 3120.0057
ALA 3130.0188
THR 3140.0253
LYS 3150.0159
ASP 3160.0283
SER 3170.0335
PHE 3180.0199
GLN 3190.0145
SER 3200.0049
PHE 3210.0101
ASN 3220.0101
LEU 3230.0090
THR 3240.0071
GLU 3250.0066
PRO 3260.0084
HIS 3270.0125
ILE 3280.0173
THR 3290.0208
THR 3300.0260
ASN 3310.0274
LYS 3320.0213
LEU 3330.0177
GLU 3340.0134
TRP 3350.0098
ILE 3360.0060
ASP 3370.0081
PRO 3380.0088
ASP 3390.0077
GLY 3400.0073
ASN 3410.0059
THR 3420.0062
ARG 3430.0045
GLY 3440.0067
GLY 3450.0046
GLY 3460.0110
GLY 10.0170
SER 20.0149
HIS 30.0123
SER 40.0101
MET 50.0077
ARG 60.0066
TYR 70.0059
PHE 80.0070
PHE 90.0067
THR 100.0079
SER 110.0082
VAL 120.0090
SER 130.0075
ARG 140.0087
PRO 150.0071
GLY 160.0080
ARG 170.0109
GLY 180.0124
GLU 190.0113
PRO 200.0103
ARG 210.0143
PHE 220.0113
ILE 230.0114
ALA 240.0085
VAL 250.0087
GLY 260.0071
TYR 270.0083
VAL 280.0087
ASP 290.0107
ASP 300.0118
THR 310.0144
GLN 320.0124
PHE 330.0095
VAL 340.0100
ARG 350.0131
PHE 360.0164
ASP 370.0193
SER 380.0200
ASP 390.0256
ALA 400.0290
ALA 410.0394
SER 420.0363
GLN 430.0311
ARG 440.0270
MET 450.0198
GLU 460.0199
PRO 470.0167
ARG 480.0182
ALA 490.0166
PRO 500.0168
TRP 510.0122
ILE 520.0102
GLU 530.0161
GLN 540.0136
GLU 550.0123
GLY 560.0235
PRO 570.0302
GLU 580.0305
TYR 590.0216
TRP 600.0234
ASP 610.0302
GLY 620.0259
GLU 630.0186
THR 640.0233
ARG 650.0257
LYS 660.0170
VAL 670.0133
LYS 680.0177
ALA 690.0154
HIS 700.0087
SER 710.0087
GLN 720.0081
THR 730.0071
HIS 740.0070
ARG 750.0078
VAL 760.0097
ASP 770.0097
LEU 780.0094
GLY 790.0107
THR 800.0115
LEU 810.0097
ARG 820.0084
GLY 830.0098
TYR 840.0102
TYR 850.0080
ASN 860.0079
GLN 870.0061
SER 880.0053
GLU 890.0057
ALA 900.0042
GLY 910.0069
SER 920.0069
HIS 930.0069
THR 940.0070
VAL 950.0070
GLN 960.0063
ARG 970.0061
MET 980.0059
TYR 990.0058
GLY 1000.0058
CYS 1010.0070
ASP 1020.0099
VAL 1030.0122
GLY 1040.0152
SER 1050.0184
ASP 1060.0195
TRP 1070.0152
ARG 1080.0134
PHE 1090.0096
LEU 1100.0109
ARG 1110.0061
GLY 1120.0063
TYR 1130.0064
HIS 1140.0071
GLN 1150.0072
TYR 1160.0073
ALA 1170.0064
TYR 1180.0063
ASP 1190.0051
GLY 1200.0044
LYS 1210.0035
ASP 1220.0062
TYR 1230.0083
ILE 1240.0106
ALA 1250.0108
LEU 1260.0137
LYS 1270.0166
GLU 1280.0152
ASP 1290.0194
LEU 1300.0173
ARG 1310.0273
SER 1320.0263
TRP 1330.0214
THR 1340.0192
ALA 1350.0179
ALA 1360.0144
ASP 1370.0121
MET 1380.0128
ALA 1390.0108
ALA 1400.0130
GLN 1410.0227
THR 1420.0243
THR 1430.0224
LYS 1440.0259
HIS 1450.0327
LYS 1460.0349
TRP 1470.0321
GLU 1480.0395
ALA 1490.0469
ALA 1500.0444
HIS 1510.0430
VAL 1520.0323
ALA 1530.0264
GLU 1540.0323
GLN 1550.0306
LEU 1560.0182
ARG 1570.0164
ALA 1580.0175
TYR 1590.0152
LEU 1600.0084
GLU 1610.0066
GLY 1620.0085
THR 1630.0107
CYS 1640.0082
VAL 1650.0082
GLU 1660.0103
TRP 1670.0062
LEU 1680.0069
ARG 1690.0108
ARG 1700.0083
TYR 1710.0061
LEU 1720.0112
GLU 1730.0118
ASN 1740.0082
GLY 1750.0112
LYS 1760.0152
GLU 1770.0179
THR 1780.0163
LEU 1790.0138
GLN 1800.0158
ARG 1810.0102
THR 1820.0086
ASP 1830.0087
ALA 1840.0072
PRO 1850.0070
LYS 1860.0064
THR 1870.0057
HIS 1880.0056
MET 1890.0057
THR 1900.0064
HIS 1910.0058
HIS 1920.0085
ALA 1930.0098
VAL 1940.0122
SER 1950.0137
ASP 1960.0144
HIS 1970.0131
GLU 1980.0113
ALA 1990.0095
THR 2000.0085
LEU 2010.0064
ARG 2020.0065
CYS 2030.0056
TRP 2040.0062
ALA 2050.0063
LEU 2060.0074
SER 2070.0080
PHE 2080.0074
TYR 2090.0079
PRO 2100.0078
ALA 2110.0078
GLU 2120.0060
ILE 2130.0050
THR 2140.0044
LEU 2150.0047
THR 2160.0062
TRP 2170.0064
GLN 2180.0067
ARG 2190.0074
ASP 2200.0076
GLY 2210.0076
GLU 2220.0082
ASP 2230.0081
GLN 2240.0080
THR 2250.0088
GLN 2260.0083
ASP 2270.0080
THR 2280.0070
GLU 2290.0073
LEU 2300.0066
VAL 2310.0060
GLU 2320.0061
THR 2330.0061
ARG 2340.0061
PRO 2350.0061
ALA 2360.0058
GLY 2370.0054
ASP 2380.0056
GLY 2390.0065
THR 2400.0067
PHE 2410.0072
GLN 2420.0068
LYS 2430.0063
TRP 2440.0059
ALA 2450.0057
ALA 2460.0074
VAL 2470.0079
VAL 2480.0091
VAL 2490.0087
PRO 2500.0097
SER 2510.0098
GLY 2520.0092
GLN 2530.0090
GLU 2540.0073
GLN 2550.0065
ARG 2560.0072
TYR 2570.0063
THR 2580.0050
CYS 2590.0047
HIS 2600.0042
VAL 2610.0046
GLN 2620.0042
HIS 2630.0055
GLU 2640.0061
GLY 2650.0075
LEU 2660.0064
PRO 2670.0071
LYS 2680.0058
PRO 2690.0042
LEU 2700.0042
THR 2710.0038
LEU 2720.0037
ARG 2730.0042
TRP 2740.0044
GLU 2750.0046
PRO 2760.0056
GLN 2780.0017
ARG 2790.0018
THR 2800.0018
PRO 2810.0020
LYS 2820.0020
ILE 2830.0038
GLN 2840.0031
VAL 2850.0021
TYR 2860.0013
SER 2870.0011
ARG 2880.0027
HIS 2890.0046
PRO 2900.0049
ALA 2910.0040
GLU 2920.0066
ASN 2930.0082
GLY 2940.0117
LYS 2950.0112
SER 2960.0105
ASN 2970.0070
PHE 2980.0037
LEU 2990.0026
ASN 3000.0014
CYS 3010.0020
TYR 3020.0024
VAL 3030.0025
SER 3040.0028
GLY 3050.0030
PHE 3060.0031
HIS 3070.0034
PRO 3080.0047
SER 3090.0046
ASP 3100.0044
ILE 3110.0037
GLU 3120.0033
VAL 3130.0043
ASP 3140.0054
LEU 3150.0057
LEU 3160.0080
LYS 3170.0098
ASN 3180.0120
GLY 3190.0123
GLU 3200.0128
ARG 3210.0109
ILE 3220.0098
GLU 3230.0110
LYS 3240.0094
VAL 3250.0066
GLU 3260.0048
HIS 3270.0040
SER 3280.0101
ASP 3290.0093
LEU 3300.0077
SER 3310.0072
PHE 3320.0064
SER 3330.0014
LYS 3340.0019
ASP 3350.0020
TRP 3360.0018
SER 3370.0015
PHE 3380.0045
TYR 3390.0039
LEU 3400.0034
LEU 3410.0030
TYR 3420.0029
TYR 3430.0032
THR 3440.0055
GLU 3450.0073
PHE 3460.0081
THR 3470.0094
PRO 3480.0081
THR 3490.0096
GLU 3500.0087
LYS 3510.0113
ASP 3520.0105
GLU 3530.0085
TYR 3540.0065
ALA 3550.0057
CYS 3560.0045
ARG 3570.0061
VAL 3580.0036
ASN 3590.0031
HIS 3600.0031
VAL 3610.0033
THR 3620.0032
LEU 3630.0042
SER 3640.0051
GLN 3650.0037
PRO 3660.0032
LYS 3670.0045
ILE 3680.0076
VAL 3690.0058
LYS 3700.0052
TRP 3710.0029
ASP 3720.0023
ARG 3730.0025
ASP 3740.0043
MET 3750.0059
SER 10.0057
GLN 20.0051
PHE 30.0048
ARG 40.0043
VAL 50.0047
SER 60.0063
PRO 70.0061
LEU 80.0061
ASP 90.0073
ARG 100.0055
THR 110.0031
TRP 120.0018
ASN 130.0030
LEU 140.0056
GLY 150.0066
GLU 160.0052
THR 170.0071
VAL 180.0061
GLU 190.0080
LEU 200.0073
LYS 210.0070
CYS 220.0063
GLN 230.0062
VAL 240.0054
LEU 250.0053
LEU 260.0063
SER 270.0057
ASN 280.0061
PRO 290.0060
THR 300.0063
SER 310.0106
GLY 320.0108
CYS 330.0101
SER 340.0095
TRP 350.0092
LEU 360.0088
PHE 370.0066
GLN 380.0051
PRO 390.0034
ARG 400.0016
GLY 410.0029
ALA 420.0065
ALA 430.0106
ALA 440.0080
SER 450.0112
PRO 460.0086
THR 470.0094
PHE 480.0108
LEU 490.0108
LEU 500.0121
TYR 510.0126
LEU 520.0132
SER 530.0138
GLN 540.0147
ASN 550.0150
LYS 560.0170
PRO 570.0156
LYS 580.0153
ALA 590.0142
ALA 600.0135
GLU 610.0165
GLY 620.0174
LEU 630.0155
ASP 640.0170
THR 650.0181
GLN 660.0177
ARG 670.0144
PHE 680.0136
SER 690.0151
GLY 700.0151
LYS 710.0132
ARG 720.0129
LEU 730.0136
GLY 740.0132
ASP 750.0113
THR 760.0113
PHE 770.0108
VAL 780.0108
LEU 790.0101
THR 800.0107
LEU 810.0103
SER 820.0103
ASP 830.0086
PHE 840.0064
ARG 850.0080
ARG 860.0075
GLU 870.0097
ASN 880.0071
GLU 890.0042
GLY 900.0032
TYR 910.0036
TYR 920.0053
PHE 930.0063
CYS 940.0081
SER 950.0089
ALA 960.0090
LEU 970.0089
SER 980.0088
ASN 990.0087
SER 1000.0089
ILE 1010.0095
MET 1020.0090
TYR 1030.0086
PHE 1040.0079
SER 1050.0076
HIS 1060.0043
PHE 1070.0035
VAL 1080.0036
PRO 1090.0026
VAL 1100.0026
PHE 1110.0032
LEU 1120.0047
PRO 1130.0055
ALA 1140.0073
SER 10.0197
GLN 20.0174
PHE 30.0149
ARG 40.0156
VAL 50.0127
SER 60.0130
PRO 70.0129
LEU 80.0155
ASP 90.0167
ARG 100.0125
THR 110.0087
TRP 120.0040
ASN 130.0037
LEU 140.0082
GLY 150.0116
GLU 160.0086
THR 170.0086
VAL 180.0048
GLU 190.0066
LEU 200.0068
LYS 210.0089
CYS 220.0105
GLN 230.0131
VAL 240.0134
LEU 250.0173
LEU 260.0149
SER 270.0165
ASN 280.0142
PRO 290.0120
THR 300.0094
SER 310.0090
GLY 320.0069
CYS 330.0072
SER 340.0076
TRP 350.0068
LEU 360.0089
PHE 370.0098
GLN 380.0110
PRO 390.0117
ARG 400.0128
GLY 410.0061
ALA 420.0029
ALA 430.0015
ALA 440.0050
SER 450.0059
PRO 460.0104
THR 470.0094
PHE 480.0086
LEU 490.0071
LEU 500.0064
TYR 510.0060
LEU 520.0045
SER 530.0051
GLN 540.0045
ASN 550.0041
LYS 560.0034
PRO 570.0039
LYS 580.0060
ALA 590.0067
ALA 600.0086
GLU 610.0127
GLY 620.0151
LEU 630.0128
ASP 640.0137
THR 650.0108
GLN 660.0153
ARG 670.0122
PHE 680.0084
SER 690.0066
GLY 700.0044
LYS 710.0059
ARG 720.0072
LEU 730.0114
GLY 740.0131
ASP 750.0134
THR 760.0118
PHE 770.0074
VAL 780.0062
LEU 790.0034
THR 800.0054
LEU 810.0069
SER 820.0110
ASP 830.0121
PHE 840.0081
ARG 850.0119
ARG 860.0126
GLU 870.0151
ASN 880.0104
GLU 890.0108
GLY 900.0130
TYR 910.0101
TYR 920.0085
PHE 930.0094
CYS 940.0091
SER 950.0102
ALA 960.0107
LEU 970.0115
SER 980.0122
ASN 990.0132
SER 1000.0139
ILE 1010.0136
MET 1020.0128
TYR 1030.0126
PHE 1040.0123
SER 1050.0119
HIS 1060.0133
PHE 1070.0122
VAL 1080.0102
PRO 1090.0108
VAL 1100.0082
PHE 1110.0088
LEU 1120.0078
PRO 1130.0101
ALA 1140.0146

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.