CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***    ***

Normal Mode Analysis for ID 2607232355593928074

Conformational change expected to be analysed

%Projmod-Wn> Different number of atoms for the other conformer.

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: Rotation-translation modes have a cumulative overlap of 0.7070 !!! This probably means that the second conformation was not fitted properly onto the first one.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.5598 0.031 -122.7618
mode 8 1.04 0.6765 0.054 94.9142
mode 9 1.49 0.5032 0.058 53.5856
mode 10 2.34 0.5329 0.066 -62.4911
mode 11 2.59 0.5510 0.132 169.4284
mode 12 2.72 0.0294 0.136 49.4654
mode 13 3.13 0.5977 0.163 -108.1903
mode 14 3.41 0.1142 0.206 140.6958
mode 15 3.88 0.2759 0.210 -17.0178
mode 16 4.24 0.2330 0.210 -19.0753
mode 17 4.37 0.1060 0.210 29.4486
mode 18 4.40 0.2672 0.214 -41.5871
mode 19 4.52 0.1700 0.214 13.0692
mode 20 4.56 0.3929 0.214 13.4689
mode 21 4.98 0.4407 0.214 -7.4817
mode 22 4.99 0.3404 0.218 11.6346
mode 23 5.14 0.2600 0.241 103.4473
mode 24 5.30 0.3653 0.241 24.2590
mode 25 5.33 0.1766 0.245 32.8438
mode 26 5.49 0.5733 0.249 41.9620
mode 27 5.77 0.3745 0.249 25.2111
mode 28 5.78 0.5198 0.256 -52.6121
mode 29 5.96 0.4781 0.307 152.9116
mode 30 6.02 0.5560 0.311 30.8545
mode 31 6.15 0.5257 0.342 124.0207
mode 32 6.19 0.4140 0.346 -33.8624
mode 33 6.33 0.4368 0.369 -98.2772
mode 34 6.39 0.1630 0.369 -27.8111
mode 35 6.46 0.3767 0.416 146.6507
mode 36 6.48 0.5499 0.424 54.4424
mode 37 6.57 0.5748 0.443 -95.4157
mode 38 6.70 0.4884 0.447 37.6271
mode 39 6.84 0.4559 0.447 6.8327
mode 40 6.90 0.2680 0.482 -127.8911
mode 41 7.04 0.4419 0.501 -89.3045
mode 42 7.13 0.6448 0.513 -67.5223
mode 43 7.21 0.5128 0.521 -67.2074
mode 44 7.26 0.5109 0.521 -7.0733
mode 45 7.40 0.5724 0.521 11.2656
mode 46 7.45 0.4352 0.571 -147.4195
mode 47 7.51 0.6198 0.610 132.6169
mode 48 7.60 0.5796 0.633 -106.2065
mode 49 7.63 0.5388 0.637 -18.0123
mode 50 7.72 0.3834 0.645 62.8688
mode 51 7.79 0.2616 0.645 16.4044
mode 52 7.85 0.6231 0.664 -97.3472
mode 53 7.89 0.5056 0.668 29.6267
mode 54 8.02 0.4289 0.680 -75.1168
mode 55 8.05 0.4257 0.715 -127.7078
mode 56 8.13 0.1565 0.719 -8.6591
mode 57 8.24 0.4745 0.719 4.2936
mode 58 8.34 0.5033 0.719 15.0827
mode 59 8.40 0.4814 0.734 -90.0219
mode 60 8.43 0.5206 0.734 -16.8089
mode 61 8.49 0.5406 0.750 80.2336
mode 62 8.51 0.4550 0.754 40.1925
mode 63 8.56 0.6085 0.758 32.8894
mode 64 8.67 0.4817 0.758 12.4959
mode 65 8.73 0.4243 0.762 39.3274
mode 66 8.79 0.4085 0.765 53.5096
mode 67 8.82 0.5152 0.769 -26.1569
mode 68 8.95 0.2413 0.769 32.8512
mode 69 9.02 0.3687 0.773 -20.5220
mode 70 9.09 0.4984 0.777 46.8864
mode 71 9.15 0.4349 0.777 18.7911
mode 72 9.15 0.2832 0.777 -12.6508
mode 73 9.20 0.5171 0.785 58.0554
mode 74 9.25 0.3216 0.785 -23.6264
mode 75 9.33 0.5934 0.789 -37.3845
mode 76 9.36 0.1959 0.797 -50.5413
mode 77 9.46 0.4336 0.797 22.7144
mode 78 9.59 0.4329 0.797 -25.2278
mode 79 9.63 0.4405 0.797 16.3718
mode 80 9.69 0.5314 0.824 -106.5752
mode 81 9.75 0.5437 0.824 13.6714
mode 82 9.77 0.4137 0.847 -99.5489
mode 83 9.80 0.3598 0.855 -66.8460
mode 84 9.87 0.4351 0.855 -4.0026
mode 85 9.92 0.4380 0.863 -55.5401
mode 86 9.95 0.4486 0.863 15.5459
mode 87 9.98 0.4709 0.878 -81.6725
mode 88 10.12 0.4802 0.886 -61.3607
mode 89 10.13 0.5242 0.890 -42.0907
mode 90 10.16 0.5009 0.890 12.5261
mode 91 10.22 0.4473 0.898 -48.4408
mode 92 10.27 0.3345 0.901 55.4317
mode 93 10.29 0.3636 0.905 -10.8396
mode 94 10.36 0.3363 0.905 16.2863
mode 95 10.40 0.4870 0.905 -32.6387
mode 96 10.49 0.4057 0.909 -23.4009
mode 97 10.53 0.3116 0.909 6.9409
mode 98 10.59 0.4245 0.909 17.7819
mode 99 10.60 0.4865 0.933 107.3490
mode 100 10.63 0.4535 0.936 -23.8726
mode 101 10.67 0.5631 0.936 -28.8762
mode 102 10.72 0.5000 0.944 52.3533
mode 103 10.80 0.3876 0.948 44.4072
mode 104 10.84 0.3471 0.948 -2.5701
mode 105 10.86 0.5142 0.948 -7.0601
mode 106 10.92 0.5347 0.952 41.9919

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.