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Normal Mode Analysis for ID 2608010940541938707

Conformational change expected to be analysed



The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0093 0.005 46.6448
mode 8 2.26 0.0461 0.040 121.5088
mode 9 2.99 0.0350 0.043 -34.8763
mode 10 3.72 0.3031 0.097 -152.3750
mode 11 3.77 0.5091 0.100 -36.7131
mode 12 4.21 0.1082 0.111 -67.4526
mode 13 4.56 0.2985 0.112 21.9752
mode 14 4.69 0.3689 0.113 22.6970
mode 15 4.86 0.2730 0.121 56.9063
mode 16 5.19 0.2772 0.128 -53.1769
mode 17 5.38 0.2171 0.130 -34.1524
mode 18 5.68 0.3796 0.130 4.2912
mode 19 5.85 0.3294 0.143 71.9362
mode 20 6.01 0.3840 0.150 56.5778
mode 21 6.31 0.1804 0.151 21.0214
mode 22 6.55 0.5724 0.155 40.7433
mode 23 6.69 0.4238 0.158 32.8802
mode 24 7.13 0.4981 0.160 -34.4841
mode 25 7.20 0.1857 0.169 58.8454
mode 26 7.47 0.3736 0.169 1.3096
mode 27 7.76 0.4383 0.174 -49.7610
mode 28 7.95 0.3047 0.175 -20.8458
mode 29 8.08 0.4214 0.185 -63.3732
mode 30 8.22 0.2603 0.209 -100.8248
mode 31 8.34 0.3513 0.209 1.1454
mode 32 8.70 0.4753 0.212 -35.5931
mode 33 8.84 0.3613 0.218 52.3275
mode 34 9.41 0.3629 0.219 -21.7897
mode 35 9.78 0.4460 0.224 44.9004
mode 36 9.87 0.3564 0.228 -42.2694
mode 37 10.21 0.5828 0.228 9.4967
mode 38 10.39 0.5999 0.230 -21.9496
mode 39 10.63 0.3957 0.230 14.6445
mode 40 10.83 0.3034 0.232 -30.2491
mode 41 11.22 0.4278 0.233 21.4751
mode 42 11.36 0.4171 0.240 52.0828
mode 43 11.37 0.3232 0.247 55.9403
mode 44 11.86 0.4944 0.247 4.6669
mode 45 11.98 0.4643 0.247 -11.1601
mode 46 12.29 0.3168 0.249 -28.2534
mode 47 12.30 0.4438 0.251 30.4666
mode 48 12.69 0.3450 0.267 -80.7202
mode 49 13.08 0.4650 0.267 11.7480
mode 50 13.10 0.2799 0.268 17.7484
mode 51 13.32 0.5579 0.273 44.9848
mode 52 13.46 0.5152 0.273 7.0282
mode 53 13.66 0.3783 0.280 56.0646
mode 54 13.92 0.5143 0.283 -34.9729
mode 55 14.12 0.3053 0.284 -21.4451
mode 56 14.20 0.3538 0.284 15.0433
mode 57 14.58 0.4033 0.289 -44.5375
mode 58 14.79 0.5643 0.289 -8.9064
mode 59 15.08 0.5618 0.291 -23.9402
mode 60 15.20 0.5230 0.291 -0.6466
mode 61 15.51 0.4975 0.306 -80.0429
mode 62 15.75 0.3812 0.306 7.5564
mode 63 15.94 0.2744 0.306 -3.7193
mode 64 16.08 0.5698 0.310 42.7190
mode 65 16.36 0.4299 0.314 40.8836
mode 66 16.65 0.3206 0.317 -34.3320
mode 67 16.92 0.4144 0.317 10.0742
mode 68 17.11 0.3253 0.318 -14.4033
mode 69 17.48 0.3453 0.318 8.7348
mode 70 17.50 0.3398 0.318 -7.9059
mode 71 17.67 0.2997 0.319 18.5664
mode 72 17.81 0.5033 0.323 -40.1148
mode 73 17.91 0.4494 0.323 -0.3336
mode 74 18.34 0.5392 0.323 17.5523
mode 75 18.51 0.2710 0.324 19.0197
mode 76 18.66 0.3864 0.328 -42.4168
mode 77 18.94 0.3246 0.329 -14.5433
mode 78 19.09 0.4816 0.330 19.8960
mode 79 19.38 0.3852 0.331 25.0204
mode 80 19.79 0.4434 0.331 9.0823
mode 81 19.91 0.3431 0.331 -2.7343
mode 82 20.10 0.2903 0.332 5.3355
mode 83 20.11 0.4306 0.332 9.4473
mode 84 20.36 0.3340 0.334 -27.6761
mode 85 20.46 0.4305 0.339 46.9296
mode 86 20.75 0.3536 0.339 11.6389
mode 87 21.14 0.5032 0.341 -31.4299
mode 88 21.17 0.2297 0.341 -6.1554
mode 89 21.33 0.4726 0.342 15.4857
mode 90 21.41 0.4721 0.343 14.7575
mode 91 21.85 0.3016 0.343 -6.4857
mode 92 21.91 0.4514 0.343 13.2949
mode 93 21.99 0.4438 0.343 1.3465
mode 94 22.15 0.4724 0.343 1.9820
mode 95 22.28 0.4763 0.344 15.5234
mode 96 22.33 0.4765 0.347 37.9171
mode 97 22.72 0.4707 0.356 -61.4184
mode 98 22.88 0.3280 0.357 16.8906
mode 99 23.09 0.5073 0.358 -20.6362
mode 100 23.12 0.4750 0.359 -27.5549
mode 101 23.22 0.4017 0.361 23.8418
mode 102 23.27 0.4496 0.361 10.0437
mode 103 23.57 0.4218 0.362 25.0671
mode 104 23.65 0.4923 0.362 -6.9889
mode 105 23.83 0.4608 0.366 39.6171
mode 106 24.05 0.4837 0.367 15.4865

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.