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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 10  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0855
THR 260.0080
LYS 270.0078
CYS 280.0070
THR 290.0061
VAL 300.0061
SER 310.0052
HIS 320.0052
GLU 330.0061
VAL 340.0055
ALA 350.0061
ASP 360.0057
CYS 370.0066
SER 380.0061
HIS 390.0067
LEU 400.0076
LYS 410.0084
LEU 420.0087
THR 430.0094
GLN 440.0095
VAL 450.0088
PRO 460.0092
ASP 470.0099
ASP 480.0097
LEU 490.0087
PRO 500.0087
THR 510.0090
ASN 520.0082
ILE 530.0072
THR 540.0065
VAL 550.0057
LEU 560.0062
ASN 570.0057
LEU 580.0065
THR 590.0059
HIS 600.0065
ASN 610.0075
GLN 620.0084
LEU 630.0083
ARG 640.0088
ARG 650.0087
LEU 660.0084
PRO 670.0094
ALA 680.0094
ALA 690.0103
ASN 700.0098
PHE 710.0090
THR 720.0099
ARG 730.0098
TYR 740.0086
SER 750.0087
GLN 760.0080
LEU 770.0070
THR 780.0061
SER 790.0054
LEU 800.0058
ASP 810.0053
VAL 820.0061
GLY 830.0055
PHE 840.0061
ASN 850.0071
THR 860.0078
ILE 870.0076
SER 880.0078
LYS 890.0078
LEU 900.0074
GLU 910.0082
PRO 920.0079
GLU 930.0088
LEU 940.0082
CYS 950.0075
GLN 960.0085
LYS 970.0089
LEU 980.0079
PRO 990.0078
MET 1000.0071
LEU 1010.0063
LYS 1020.0053
VAL 1030.0047
LEU 1040.0050
ASN 1050.0047
LEU 1060.0053
GLN 1070.0048
HIS 1080.0056
ASN 1090.0064
GLU 1100.0069
LEU 1110.0063
SER 1120.0061
GLN 1130.0061
LEU 1140.0056
SER 1150.0060
ASP 1160.0058
LYS 1170.0068
THR 1180.0065
PHE 1190.0059
ALA 1200.0064
PHE 1210.0071
CYS 1220.0063
THR 1230.0061
ASN 1240.0060
LEU 1250.0050
THR 1260.0043
GLU 1270.0037
LEU 1280.0039
HIS 1290.0037
LEU 1300.0041
MET 1310.0040
SER 1320.0049
ASN 1330.0054
SER 1340.0055
ILE 1350.0049
GLN 1360.0048
LYS 1370.0044
ILE 1380.0040
LYS 1390.0042
ASN 1400.0042
ASN 1410.0041
PRO 1420.0046
PHE 1430.0041
VAL 1440.0043
LYS 1450.0052
GLN 1460.0047
LYS 1470.0047
ASN 1480.0048
LEU 1490.0039
ILE 1500.0032
THR 1510.0026
LEU 1520.0026
ASP 1530.0026
LEU 1540.0030
SER 1550.0031
HIS 1560.0040
ASN 1570.0043
GLY 1580.0045
LEU 1590.0036
SER 1600.0035
SER 1610.0027
THR 1620.0019
LYS 1630.0019
LEU 1640.0025
GLY 1650.0027
THR 1660.0026
GLN 1670.0029
VAL 1680.0029
GLN 1690.0032
LEU 1700.0032
GLU 1710.0035
ASN 1720.0037
LEU 1730.0028
GLN 1740.0024
GLU 1750.0017
LEU 1760.0015
LEU 1770.0017
LEU 1780.0020
SER 1790.0025
ASN 1800.0035
ASN 1810.0037
LYS 1820.0040
ILE 1830.0032
GLN 1840.0037
ALA 1850.0030
LEU 1860.0024
LYS 1870.0021
SER 1880.0017
GLU 1890.0012
GLU 1900.0012
LEU 1910.0011
ASP 1920.0015
ILE 1930.0019
PHE 1940.0020
ALA 1950.0026
ASN 1960.0033
SER 1970.0028
SER 1980.0029
LEU 1990.0021
LYS 2000.0022
LYS 2010.0014
LEU 2020.0012
GLU 2030.0014
LEU 2040.0020
SER 2050.0025
SER 2060.0034
ASN 2070.0034
GLN 2080.0041
ILE 2090.0036
LYS 2100.0043
GLU 2110.0040
PHE 2120.0034
SER 2130.0033
PRO 2140.0036
GLY 2150.0032
CYS 2160.0024
PHE 2170.0025
HIS 2180.0030
ALA 2190.0022
ILE 2200.0022
GLY 2210.0030
ARG 2220.0031
LEU 2230.0026
PHE 2240.0028
GLY 2250.0022
LEU 2260.0021
PHE 2270.0020
LEU 2280.0027
ASN 2290.0029
ASN 2300.0036
VAL 2310.0038
GLN 2320.0047
LEU 2330.0048
GLY 2340.0055
PRO 2350.0059
SER 2360.0061
LEU 2370.0051
THR 2380.0049
GLU 2390.0055
LYS 2400.0050
LEU 2410.0042
CYS 2420.0047
LEU 2430.0050
GLU 2440.0041
LEU 2450.0039
ALA 2460.0048
ASN 2470.0048
THR 2480.0040
SER 2490.0039
ILE 2500.0034
ARG 2510.0036
ASN 2520.0029
LEU 2530.0030
SER 2540.0028
LEU 2550.0034
SER 2560.0033
ASN 2570.0040
SER 2580.0043
GLN 2590.0051
LEU 2600.0054
SER 2610.0061
THR 2620.0065
THR 2630.0063
SER 2640.0070
ASN 2650.0073
THR 2660.0069
THR 2670.0061
PHE 2680.0057
LEU 2690.0063
GLY 2700.0056
LEU 2710.0052
LYS 2720.0061
TRP 2730.0057
THR 2740.0050
ASN 2750.0050
LEU 2760.0044
THR 2770.0042
MET 2780.0035
LEU 2790.0037
ASP 2800.0033
LEU 2810.0040
SER 2820.0037
TYR 2830.0040
ASN 2840.0047
ASN 2850.0053
LEU 2860.0056
ASN 2870.0064
VAL 2880.0068
VAL 2890.0065
GLY 2900.0072
ASN 2910.0076
ASP 2920.0073
SER 2930.0066
PHE 2940.0061
ALA 2950.0068
TRP 2960.0064
LEU 2970.0058
PRO 2980.0062
GLN 2990.0055
LEU 3000.0049
GLU 3010.0045
TYR 3020.0038
PHE 3030.0040
PHE 3040.0036
LEU 3050.0042
GLU 3060.0037
TYR 3070.0040
ASN 3080.0048
ASN 3090.0056
ILE 3100.0059
GLN 3110.0067
HIS 3120.0070
LEU 3130.0066
PHE 3140.0073
SER 3150.0075
HIS 3160.0076
SER 3170.0069
LEU 3180.0063
HIS 3190.0070
GLY 3200.0068
LEU 3210.0060
PHE 3220.0063
ASN 3230.0057
VAL 3240.0050
ARG 3250.0046
TYR 3260.0039
LEU 3270.0041
ASN 3280.0036
LEU 3290.0041
LYS 3300.0036
ARG 3310.0041
SER 3320.0046
PHE 3330.0053
THR 3340.0058
LYS 3350.0057
GLN 3360.0062
SER 3370.0069
ILE 3380.0071
SER 3390.0080
LEU 3400.0081
ALA 3410.0076
SER 3420.0073
LEU 3430.0067
PRO 3440.0064
LYS 3450.0069
ILE 3460.0066
ASP 3470.0073
ASP 3480.0075
PHE 3490.0073
SER 3500.0068
PHE 3510.0063
GLN 3520.0069
TRP 3530.0068
LEU 3540.0060
LYS 3550.0064
CYS 3560.0058
LEU 3570.0051
GLU 3580.0046
HIS 3590.0039
LEU 3600.0041
ASN 3610.0035
MET 3620.0040
GLU 3630.0034
ASP 3640.0037
ASN 3650.0045
ASP 3660.0051
ILE 3670.0054
PRO 3680.0058
GLY 3690.0057
ILE 3700.0057
LYS 3710.0065
SER 3720.0069
ASN 3730.0070
MET 3740.0064
PHE 3750.0060
THR 3760.0067
GLY 3770.0068
LEU 3780.0060
ILE 3790.0063
ASN 3800.0057
LEU 3810.0051
LYS 3820.0045
TYR 3830.0038
LEU 3840.0039
SER 3850.0033
LEU 3860.0036
SER 3870.0030
ASN 3880.0034
SER 3890.0041
PHE 3900.0045
THR 3910.0047
SER 3920.0044
LEU 3930.0043
ARG 3940.0041
THR 3950.0044
LEU 3960.0044
THR 3970.0050
ASN 3980.0055
GLU 3990.0059
THR 4000.0054
PHE 4010.0054
VAL 4020.0061
SER 4030.0062
LEU 4040.0057
ALA 4050.0062
HIS 4060.0064
SER 4070.0057
PRO 4080.0054
LEU 4090.0048
HIS 4100.0042
ILE 4110.0035
LEU 4120.0035
ASN 4130.0029
LEU 4140.0031
THR 4150.0025
LYS 4160.0026
ASN 4170.0033
LYS 4180.0032
ILE 4190.0032
SER 4200.0031
LYS 4210.0034
ILE 4220.0037
GLU 4230.0043
SER 4240.0047
ASP 4250.0050
ALA 4260.0047
PHE 4270.0046
SER 4280.0053
TRP 4290.0056
LEU 4300.0051
GLY 4310.0053
HIS 4320.0050
LEU 4330.0043
GLU 4340.0039
VAL 4350.0032
LEU 4360.0030
ASP 4370.0025
LEU 4380.0025
GLY 4390.0018
LEU 4400.0018
ASN 4410.0022
GLU 4420.0023
ILE 4430.0023
GLY 4440.0021
GLN 4450.0025
GLU 4460.0026
LEU 4470.0030
THR 4480.0036
GLY 4490.0038
GLN 4500.0043
GLU 4510.0040
TRP 4520.0041
ARG 4530.0048
GLY 4540.0052
LEU 4550.0046
GLU 4560.0049
ASN 4570.0046
ILE 4580.0039
PHE 4590.0036
GLU 4600.0029
ILE 4610.0027
TYR 4620.0021
LEU 4630.0020
SER 4640.0015
TYR 4650.0013
ASN 4660.0016
LYS 4670.0016
TYR 4680.0016
LEU 4690.0019
GLN 4700.0023
LEU 4710.0027
THR 4720.0033
ARG 4730.0038
ASN 4740.0040
SER 4750.0035
PHE 4760.0036
ALA 4770.0042
LEU 4780.0044
VAL 4790.0041
PRO 4800.0043
SER 4810.0041
LEU 4820.0035
GLN 4830.0033
ARG 4840.0027
LEU 4850.0025
MET 4860.0020
LEU 4870.0019
ARG 4880.0016
ARG 4890.0014
VAL 4900.0015
ALA 4910.0015
LEU 4920.0019
LYS 4930.0022
ASN 4940.0027
VAL 4950.0030
ASP 4960.0034
SER 4970.0037
SER 4980.0043
PRO 4990.0044
SER 5000.0039
PRO 5010.0035
PHE 5020.0035
GLN 5030.0040
PRO 5040.0042
LEU 5050.0038
ARG 5060.0039
ASN 5070.0037
LEU 5080.0033
THR 5090.0031
ILE 5100.0027
LEU 5110.0025
ASP 5120.0022
LEU 5130.0023
SER 5140.0022
ASN 5150.0021
ASN 5160.0021
ASN 5170.0026
ILE 5180.0028
ALA 5190.0034
ASN 5200.0036
ILE 5210.0036
ASN 5220.0041
ASP 5230.0044
ASP 5240.0044
MET 5250.0038
LEU 5260.0038
GLU 5270.0042
GLY 5280.0042
LEU 5290.0037
GLU 5300.0038
LYS 5310.0035
LEU 5320.0032
GLU 5330.0029
ILE 5340.0026
LEU 5350.0027
ASP 5360.0025
LEU 5370.0028
GLN 5380.0028
HIS 5390.0029
ASN 5400.0031
ASN 5410.0036
LEU 5420.0038
ALA 5430.0043
ARG 5440.0047
LEU 5450.0046
TRP 5460.0048
LYS 5470.0053
HIS 5480.0057
ALA 5490.0059
ASN 5500.0055
PRO 5510.0057
GLY 5520.0058
GLY 5530.0057
PRO 5540.0052
ILE 5550.0047
TYR 5560.0045
PHE 5570.0041
LEU 5580.0039
LYS 5590.0043
GLY 5600.0042
LEU 5610.0037
SER 5620.0037
HIS 5630.0033
LEU 5640.0031
HIS 5650.0028
ILE 5660.0027
LEU 5670.0030
ASN 5680.0030
LEU 5690.0033
GLU 5700.0034
SER 5710.0036
ASN 5720.0038
GLY 5730.0043
PHE 5740.0045
ASP 5750.0051
GLU 5760.0051
ILE 5770.0048
PRO 5780.0051
VAL 5790.0052
GLU 5800.0049
VAL 5810.0045
PHE 5820.0042
LYS 5830.0045
ASP 5840.0042
LEU 5850.0037
PHE 5860.0035
GLU 5870.0031
LEU 5880.0031
LYS 5890.0029
ILE 5900.0030
ILE 5910.0032
ASP 5920.0033
LEU 5930.0038
GLY 5940.0039
LEU 5950.0041
ASN 5960.0044
ASN 5970.0050
LEU 5980.0050
ASN 5990.0054
THR 6000.0056
LEU 6010.0052
PRO 6020.0054
ALA 6030.0053
SER 6040.0049
VAL 6050.0047
PHE 6060.0042
ASN 6070.0043
ASN 6080.0040
GLN 6090.0036
VAL 6100.0034
SER 6110.0030
LEU 6120.0031
LYS 6130.0029
SER 6140.0031
LEU 6150.0034
ASN 6160.0036
LEU 6170.0041
GLN 6180.0043
LYS 6190.0047
ASN 6200.0049
LEU 6210.0054
ILE 6220.0053
THR 6230.0058
SER 6240.0057
VAL 6250.0052
GLU 6260.0052
LYS 6270.0049
LYS 6280.0051
VAL 6290.0048
PHE 6300.0044
GLY 6310.0042
PRO 6320.0039
ALA 6330.0037
PHE 6340.0037
ARG 6350.0034
ASN 6360.0030
LEU 6370.0031
THR 6380.0029
GLU 6390.0032
LEU 6400.0036
ASP 6410.0039
MET 6420.0043
ARG 6430.0046
PHE 6440.0052
ASN 6450.0053
PRO 6460.0059
PHE 6470.0058
ASP 6480.0063
CYS 6490.0064
THR 6500.0066
CYS 6510.0064
GLU 6520.0063
SER 6530.0060
ILE 6540.0056
ALA 6550.0055
TRP 6560.0050
PHE 6570.0048
VAL 6580.0050
ASN 6590.0046
TRP 6600.0042
ILE 6610.0042
ASN 6620.0042
GLU 6630.0035
THR 6640.0031
HIS 6650.0028
THR 6660.0032
ASN 6670.0034
ILE 6680.0038
PRO 6690.0041
GLU 6700.0046
LEU 6710.0047
SER 6720.0052
SER 6730.0055
HIS 6740.0052
TYR 6750.0053
LEU 6760.0059
CYS 6770.0063
ASN 6780.0067
THR 6790.0069
PRO 6800.0074
PRO 6810.0078
HIS 6820.0078
TYR 6830.0071
HIS 6840.0072
GLY 6850.0068
PHE 6860.0066
PRO 6870.0059
VAL 6880.0056
ARG 6890.0052
LEU 6900.0058
PHE 6910.0060
ASP 6920.0061
THR 6930.0058
SER 6940.0060
SER 6950.0066
CYS 6960.0063
GLU 10.0089
ALA 20.0088
ALA 30.0086
ALA 40.0080
LYS 50.0077
MET 60.0077
GLN 70.0073
ARG 80.0067
LEU 90.0066
VAL 100.0065
LEU 110.0059
LEU 120.0054
LEU 130.0055
ALA 140.0053
ILE 150.0046
SER 160.0043
LEU 170.0045
LEU 180.0043
LEU 190.0038
TYR 200.0038
GLN 210.0041
ASP 220.0038
LEU 230.0035
PRO 240.0037
VAL 250.0039
ARG 260.0044
SER 270.0043
GLU 280.0042
PHE 290.0048
GLU 300.0044
LEU 310.0034
ASP 320.0035
ARG 330.0036
ILE 340.0027
CYS 350.0021
GLY 360.0014
TYR 370.0007
GLY 380.0014
THR 390.0012
ALA 400.0020
ARG 410.0029
CYS 420.0036
ARG 430.0046
LYS 440.0055
LYS 450.0056
CYS 460.0048
ARG 470.0046
SER 480.0046
GLN 490.0035
GLU 500.0034
TYR 510.0037
ARG 520.0038
ILE 530.0031
GLY 540.0032
ARG 550.0035
CYS 560.0033
PRO 570.0033
ASN 580.0044
THR 590.0045
TYR 600.0046
ALA 610.0043
CYS 620.0033
CYS 630.0032
LEU 640.0023
ARG 650.0022
LYS 660.0025
TRP 670.0018
ASP 680.0007
GLU 690.0018
SER 700.0021
LEU 710.0016
LEU 720.0024
ASN 730.0035
ARG 740.0032
THR 750.0028
LYS 760.0051
PRO 770.0065
GLU 780.0076
ALA 790.0091
ALA 800.0085
ALA 810.0077
LYS 820.0089
LYS 830.0072
GLU 840.0088
MET 850.0082
ASN 860.0099
LEU 870.0096
SER 880.0111
VAL 890.0121
GLY 900.0135
LEU 910.0156
GLY 920.0172
GLY 930.0192
GLY 940.0180
SER 950.0175
ASN 960.0152
LEU 970.0145
SER 980.0133
VAL 990.0123
GLY 1000.0122
LEU 1010.0111
GLY 1020.0125
GLU 1030.0119
ILE 1040.0141
GLY 1050.0146
GLY 1060.0132
GLY 1070.0123
SER 1080.0103
LYS 1090.0102
LEU 1100.0101
LEU 1110.0098
ASP 1120.0117
ILE 1130.0126
ASN 1140.0147
LEU 1150.0153
GLY 1160.0180
ARG 1170.0194
GLY 1180.0201
GLY 1190.0194
GLY 1200.0184
SER 1210.0164
MET 1220.0146
VAL 1230.0125
ASP 1240.0110
LEU 1250.0087
THR 1260.0076
PHE 1270.0059
GLY 1280.0057
GLY 1290.0037
VAL 1300.0037
GLY 1310.0025
GLY 1320.0028
GLY 1330.0022
SER 1340.0019
THR 1350.0014
PHE 1360.0012
THR 1370.0021
PHE 1380.0038
PHE 1390.0044
PRO 1400.0064
LEU 1410.0066
VAL 1420.0087
ILE 1430.0095
GLY 1440.0109
GLY 1450.0132
GLY 1460.0139
SER 1470.0133
ASP 1480.0138
ALA 1490.0114
MET 1500.0098
TYR 1510.0076
LEU 1520.0060
GLY 1530.0037
PHE 1540.0023
ALA 1550.0014
ALA 1560.0020
GLY 1570.0024
GLY 1580.0031
GLY 1590.0031
SER 1600.0029
ALA 1610.0030
GLY 1620.0017
GLY 1630.0027
GLU 1640.0042
ASN 1650.0051
HIS 1660.0075
VAL 1670.0084
ALA 1680.0111
PHE 1690.0124
GLY 1700.0150
PRO 1710.0171
GLY 1720.0172
PRO 1730.0161
GLY 1740.0144
VAL 1750.0120
ASP 1760.0113
LEU 1770.0090
THR 1780.0084
PHE 1790.0064
GLY 1800.0061
GLY 1810.0085
VAL 1820.0096
GLN 1830.0109
PHE 1840.0110
ALA 1850.0131
MET 1860.0124
VAL 1870.0168
ASN 1880.0196
ASN 1890.0225
GLY 1900.0252
PRO 1910.0411
GLY 1920.0572
PRO 1930.0647
GLY 1940.0724
GLU 1950.0669
SER 1960.0650
PHE 1970.0677
THR 1980.0686
ALA 1990.0676
GLN 2000.0755
PRO 2010.0748
ALA 2020.0854
ASP 2030.0826
MET 2040.0761
GLN 2050.0855
ALA 2060.0789
GLY 2070.0672
ILE 2080.0475
LYS 2090.0343
GLY 2100.0212
PRO 2110.0042
GLY 2120.0035
PRO 2130.0033
GLY 2140.0038
GLY 2150.0025
SER 2160.0035
ILE 2170.0030
GLN 2180.0039
VAL 2190.0054
ILE 2200.0084
ASN 2210.0094
GLY 2220.0072
SER 2230.0097
THR 2240.0107
ILE 2250.0092
GLY 2260.0116
THR 2270.0134
GLY 2280.0120
SER 2290.0124
LYS 2300.0094
LYS 2310.0080
THR 2320.0056
ILE 2330.0055
LEU 2340.0034
ILE 2350.0038
TYR 2360.0030
SER 2370.0038
ILE 2380.0040
ILE 2390.0053
GLY 2400.0057
VAL 2410.0048
LYS 2420.0047
LYS 2430.0046
GLY 2440.0051
THR 2450.0058
LEU 2460.0059
ALA 2470.0062
TRP 2480.0054
ALA 2490.0057
ARG 2500.0049
THR 2510.0057
GLY 2520.0054
PHE 2530.0060
SER 2540.0068
PRO 2550.0076
ALA 2560.0108
LYS 2570.0123
LYS 2580.0138
LEU 2590.0164
ASN 2600.0189
ALA 2610.0198
GLY 2620.0165
VAL 2630.0156
VAL 2640.0123
ARG 2650.0111
VAL 2660.0091
PHE 2670.0092
PHE 2680.0093
LEU 2690.0109
ASN 2700.0110
GLN 2710.0117
LYS 2720.0147
LYS 2730.0157
ALA 2740.0148
LYS 2750.0167
ASP 2760.0198
VAL 2770.0193
LEU 2780.0190
ARG 2790.0222
LYS 2800.0240
THR 2810.0246
SER 2820.0256
ARG 2830.0240
PRO 2840.0253
MET 2850.0237
VAL 2860.0233
ASP 2870.0259
LEU 2880.0244
THR 2890.0282
PHE 2900.0283
GLY 2910.0324
GLY 2920.0337

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.