CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 100  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0460
THR 260.0073
LYS 270.0047
CYS 280.0018
THR 290.0013
VAL 300.0042
SER 310.0064
HIS 320.0107
GLU 330.0099
VAL 340.0075
ALA 350.0037
ASP 360.0059
CYS 370.0062
SER 380.0083
HIS 390.0096
LEU 400.0084
LYS 410.0099
LEU 420.0080
THR 430.0076
GLN 440.0057
VAL 450.0051
PRO 460.0042
ASP 470.0033
ASP 480.0035
LEU 490.0033
PRO 500.0052
THR 510.0068
ASN 520.0089
ILE 530.0079
THR 540.0097
VAL 550.0098
LEU 560.0080
ASN 570.0090
LEU 580.0087
THR 590.0108
HIS 600.0116
ASN 610.0102
GLN 620.0094
LEU 630.0074
ARG 640.0069
ARG 650.0049
LEU 660.0049
PRO 670.0036
ALA 680.0042
ALA 690.0043
ASN 700.0041
PHE 710.0048
THR 720.0055
ARG 730.0061
TYR 740.0068
SER 750.0084
GLN 760.0095
LEU 770.0091
THR 780.0110
SER 790.0106
LEU 800.0089
ASP 810.0095
VAL 820.0085
GLY 830.0101
PHE 840.0107
ASN 850.0092
THR 860.0074
ILE 870.0058
SER 880.0051
LYS 890.0035
LEU 900.0038
GLU 910.0038
PRO 920.0048
GLU 930.0059
LEU 940.0062
CYS 950.0073
GLN 960.0070
LYS 970.0076
LEU 980.0083
PRO 990.0093
MET 1000.0105
LEU 1010.0087
LYS 1020.0098
VAL 1030.0093
LEU 1040.0076
ASN 1050.0078
LEU 1060.0057
GLN 1070.0068
HIS 1080.0071
ASN 1090.0059
GLU 1100.0051
LEU 1110.0033
SER 1120.0033
GLN 1130.0026
LEU 1140.0020
SER 1150.0033
ASP 1160.0040
LYS 1170.0050
THR 1180.0036
PHE 1190.0041
ALA 1200.0056
PHE 1210.0064
CYS 1220.0062
THR 1230.0065
ASN 1240.0078
LEU 1250.0068
THR 1260.0061
GLU 1270.0053
LEU 1280.0037
HIS 1290.0035
LEU 1300.0026
MET 1310.0033
SER 1320.0038
ASN 1330.0033
SER 1340.0037
ILE 1350.0031
GLN 1360.0039
LYS 1370.0041
ILE 1380.0038
LYS 1390.0046
ASN 1400.0051
ASN 1410.0035
PRO 1420.0026
PHE 1430.0020
VAL 1440.0027
LYS 1450.0036
GLN 1460.0024
LYS 1470.0019
ASN 1480.0027
LEU 1490.0033
ILE 1500.0044
THR 1510.0030
LEU 1520.0023
ASP 1530.0019
LEU 1540.0020
SER 1550.0020
HIS 1560.0031
ASN 1570.0032
GLY 1580.0035
LEU 1590.0036
SER 1600.0039
SER 1610.0035
THR 1620.0038
LYS 1630.0036
LEU 1640.0037
GLY 1650.0035
THR 1660.0042
GLN 1670.0041
VAL 1680.0045
GLN 1690.0038
LEU 1700.0044
GLU 1710.0056
ASN 1720.0063
LEU 1730.0060
GLN 1740.0071
GLU 1750.0069
LEU 1760.0056
LEU 1770.0055
LEU 1780.0047
SER 1790.0049
ASN 1800.0051
ASN 1810.0052
LYS 1820.0040
ILE 1830.0033
GLN 1840.0029
ALA 1850.0021
LEU 1860.0014
LYS 1870.0015
SER 1880.0035
GLU 1890.0042
GLU 1900.0036
LEU 1910.0047
ASP 1920.0055
ILE 1930.0058
PHE 1940.0070
ALA 1950.0078
ASN 1960.0090
SER 1970.0088
SER 1980.0101
LEU 1990.0093
LYS 2000.0109
LYS 2010.0093
LEU 2020.0073
GLU 2030.0075
LEU 2040.0058
SER 2050.0072
SER 2060.0088
ASN 2070.0068
GLN 2080.0067
ILE 2090.0046
LYS 2100.0051
GLU 2110.0041
PHE 2120.0019
SER 2130.0030
PRO 2140.0045
GLY 2150.0049
CYS 2160.0035
PHE 2170.0041
HIS 2180.0060
ALA 2190.0070
ILE 2200.0078
GLY 2210.0097
ARG 2220.0101
LEU 2230.0086
PHE 2240.0099
GLY 2250.0090
LEU 2260.0062
PHE 2270.0074
LEU 2280.0066
ASN 2290.0094
ASN 2300.0110
VAL 2310.0094
GLN 2320.0101
LEU 2330.0081
GLY 2340.0088
PRO 2350.0076
SER 2360.0091
LEU 2370.0070
THR 2380.0055
GLU 2390.0058
LYS 2400.0051
LEU 2410.0026
CYS 2420.0024
LEU 2430.0045
GLU 2440.0032
LEU 2450.0026
ALA 2460.0056
ASN 2470.0080
THR 2480.0074
SER 2490.0085
ILE 2500.0063
ARG 2510.0059
ASN 2520.0061
LEU 2530.0047
SER 2540.0066
LEU 2550.0069
SER 2560.0082
ASN 2570.0094
SER 2580.0087
GLN 2590.0093
LEU 2600.0075
SER 2610.0062
THR 2620.0058
THR 2630.0052
SER 2640.0054
ASN 2650.0055
THR 2660.0073
THR 2670.0061
PHE 2680.0044
LEU 2690.0052
GLY 2700.0042
LEU 2710.0031
LYS 2720.0053
TRP 2730.0060
THR 2740.0041
ASN 2750.0041
LEU 2760.0021
THR 2770.0028
MET 2780.0036
LEU 2790.0039
ASP 2800.0050
LEU 2810.0048
SER 2820.0049
TYR 2830.0051
ASN 2840.0052
ASN 2850.0044
LEU 2860.0032
ASN 2870.0033
VAL 2880.0028
VAL 2890.0034
GLY 2900.0030
ASN 2910.0040
ASP 2920.0041
SER 2930.0045
PHE 2940.0045
ALA 2950.0042
TRP 2960.0045
LEU 2970.0033
PRO 2980.0030
GLN 2990.0018
LEU 3000.0023
GLU 3010.0035
TYR 3020.0036
PHE 3030.0033
PHE 3040.0034
LEU 3050.0030
GLU 3060.0048
TYR 3070.0030
ASN 3080.0017
ASN 3090.0024
ILE 3100.0026
GLN 3110.0043
HIS 3120.0029
LEU 3130.0025
PHE 3140.0013
SER 3150.0029
HIS 3160.0030
SER 3170.0035
LEU 3180.0036
HIS 3190.0034
GLY 3200.0037
LEU 3210.0034
PHE 3220.0034
ASN 3230.0038
VAL 3240.0038
ARG 3250.0039
TYR 3260.0045
LEU 3270.0035
ASN 3280.0039
LEU 3290.0036
LYS 3300.0049
ARG 3310.0051
SER 3320.0033
PHE 3330.0038
THR 3340.0047
LYS 3350.0068
GLN 3360.0045
SER 3370.0033
ILE 3380.0033
SER 3390.0049
LEU 3400.0078
ALA 3410.0077
SER 3420.0057
LEU 3430.0058
PRO 3440.0047
LYS 3450.0061
ILE 3460.0041
ASP 3470.0038
ASP 3480.0038
PHE 3490.0029
SER 3500.0020
PHE 3510.0032
GLN 3520.0029
TRP 3530.0027
LEU 3540.0028
LYS 3550.0028
CYS 3560.0037
LEU 3570.0028
GLU 3580.0030
HIS 3590.0034
LEU 3600.0034
ASN 3610.0048
MET 3620.0050
GLU 3630.0066
ASP 3640.0078
ASN 3650.0076
ASP 3660.0107
ILE 3670.0098
PRO 3680.0113
GLY 3690.0100
ILE 3700.0084
LYS 3710.0096
SER 3720.0096
ASN 3730.0087
MET 3740.0077
PHE 3750.0066
THR 3760.0071
GLY 3770.0060
LEU 3780.0047
ILE 3790.0051
ASN 3800.0039
LEU 3810.0040
LYS 3820.0029
TYR 3830.0027
LEU 3840.0039
SER 3850.0054
LEU 3860.0075
SER 3870.0087
ASN 3880.0106
SER 3890.0102
PHE 3900.0113
THR 3910.0149
SER 3920.0138
LEU 3930.0118
ARG 3940.0117
THR 3950.0111
LEU 3960.0098
THR 3970.0116
ASN 3980.0119
GLU 3990.0135
THR 4000.0117
PHE 4010.0094
VAL 4020.0110
SER 4030.0106
LEU 4040.0083
ALA 4050.0092
HIS 4060.0092
SER 4070.0071
PRO 4080.0061
LEU 4090.0049
HIS 4100.0036
ILE 4110.0028
LEU 4120.0042
ASN 4130.0054
LEU 4140.0069
THR 4150.0082
LYS 4160.0112
ASN 4170.0111
LYS 4180.0114
ILE 4190.0087
SER 4200.0082
LYS 4210.0066
ILE 4220.0055
GLU 4230.0068
SER 4240.0071
ASP 4250.0082
ALA 4260.0082
PHE 4270.0069
SER 4280.0087
TRP 4290.0098
LEU 4300.0075
GLY 4310.0076
HIS 4320.0066
LEU 4330.0049
GLU 4340.0032
VAL 4350.0017
LEU 4360.0019
ASP 4370.0034
LEU 4380.0035
GLY 4390.0056
LEU 4400.0081
ASN 4410.0091
GLU 4420.0085
ILE 4430.0054
GLY 4440.0051
GLN 4450.0032
GLU 4460.0074
LEU 4470.0057
THR 4480.0063
GLY 4490.0058
GLN 4500.0056
GLU 4510.0033
TRP 4520.0038
ARG 4530.0068
GLY 4540.0081
LEU 4550.0057
GLU 4560.0062
ASN 4570.0056
ILE 4580.0036
PHE 4590.0028
GLU 4600.0012
ILE 4610.0018
TYR 4620.0035
LEU 4630.0046
SER 4640.0063
TYR 4650.0081
ASN 4660.0092
LYS 4670.0103
TYR 4680.0099
LEU 4690.0086
GLN 4700.0097
LEU 4710.0101
THR 4720.0110
ARG 4730.0115
ASN 4740.0096
SER 4750.0072
PHE 4760.0055
ALA 4770.0075
LEU 4780.0065
VAL 4790.0046
PRO 4800.0057
SER 4810.0042
LEU 4820.0027
GLN 4830.0022
ARG 4840.0019
LEU 4850.0031
MET 4860.0046
LEU 4870.0061
ARG 4880.0071
ARG 4890.0091
VAL 4900.0094
ALA 4910.0119
LEU 4920.0103
LYS 4930.0117
ASN 4940.0118
VAL 4950.0099
ASP 4960.0107
SER 4970.0113
SER 4980.0120
PRO 4990.0102
SER 5000.0077
PRO 5010.0074
PHE 5020.0054
GLN 5030.0060
PRO 5040.0059
LEU 5050.0041
ARG 5060.0030
ASN 5070.0022
LEU 5080.0015
THR 5090.0019
ILE 5100.0027
LEU 5110.0032
ASP 5120.0045
LEU 5130.0051
SER 5140.0060
ASN 5150.0074
ASN 5160.0072
ASN 5170.0071
ILE 5180.0063
ALA 5190.0060
ASN 5200.0055
ILE 5210.0057
ASN 5220.0038
ASP 5230.0013
ASP 5240.0020
MET 5250.0024
LEU 5260.0016
GLU 5270.0008
GLY 5280.0016
LEU 5290.0007
GLU 5300.0024
LYS 5310.0023
LEU 5320.0022
GLU 5330.0033
ILE 5340.0037
LEU 5350.0033
ASP 5360.0032
LEU 5370.0033
GLN 5380.0042
HIS 5390.0046
ASN 5400.0040
ASN 5410.0068
LEU 5420.0062
ALA 5430.0082
ARG 5440.0087
LEU 5450.0077
TRP 5460.0093
LYS 5470.0124
HIS 5480.0141
ALA 5490.0171
ASN 5500.0160
PRO 5510.0216
GLY 5520.0204
GLY 5530.0173
PRO 5540.0114
ILE 5550.0075
TYR 5560.0064
PHE 5570.0053
LEU 5580.0058
LYS 5590.0058
GLY 5600.0054
LEU 5610.0041
SER 5620.0043
HIS 5630.0040
LEU 5640.0043
HIS 5650.0046
ILE 5660.0040
LEU 5670.0041
ASN 5680.0042
LEU 5690.0044
GLU 5700.0046
SER 5710.0058
ASN 5720.0059
GLY 5730.0067
PHE 5740.0065
ASP 5750.0074
GLU 5760.0083
ILE 5770.0071
PRO 5780.0074
VAL 5790.0067
GLU 5800.0067
VAL 5810.0066
PHE 5820.0058
LYS 5830.0061
ASP 5840.0059
LEU 5850.0052
PHE 5860.0048
GLU 5870.0043
LEU 5880.0043
LYS 5890.0035
ILE 5900.0038
ILE 5910.0035
ASP 5920.0037
LEU 5930.0040
GLY 5940.0042
LEU 5950.0047
ASN 5960.0052
ASN 5970.0051
LEU 5980.0039
ASN 5990.0043
THR 6000.0043
LEU 6010.0045
PRO 6020.0038
ALA 6030.0028
SER 6040.0020
VAL 6050.0022
PHE 6060.0026
ASN 6070.0024
ASN 6080.0036
GLN 6090.0027
VAL 6100.0027
SER 6110.0018
LEU 6120.0012
LYS 6130.0012
SER 6140.0022
LEU 6150.0026
ASN 6160.0037
LEU 6170.0038
GLN 6180.0039
LYS 6190.0043
ASN 6200.0041
LEU 6210.0080
ILE 6220.0080
THR 6230.0082
SER 6240.0085
VAL 6250.0081
GLU 6260.0066
LYS 6270.0062
LYS 6280.0060
VAL 6290.0056
PHE 6300.0056
GLY 6310.0039
PRO 6320.0023
ALA 6330.0030
PHE 6340.0046
ARG 6350.0041
ASN 6360.0031
LEU 6370.0030
THR 6380.0036
GLU 6390.0041
LEU 6400.0043
ASP 6410.0051
MET 6420.0049
ARG 6430.0046
PHE 6440.0048
ASN 6450.0052
PRO 6460.0106
PHE 6470.0083
ASP 6480.0093
CYS 6490.0062
THR 6500.0070
CYS 6510.0110
GLU 6520.0160
SER 6530.0143
ILE 6540.0100
ALA 6550.0123
TRP 6560.0083
PHE 6570.0075
VAL 6580.0071
ASN 6590.0075
TRP 6600.0071
ILE 6610.0065
ASN 6620.0085
GLU 6630.0064
THR 6640.0096
HIS 6650.0155
THR 6660.0053
ASN 6670.0061
ILE 6680.0058
PRO 6690.0069
GLU 6700.0075
LEU 6710.0047
SER 6720.0049
SER 6730.0039
HIS 6740.0033
TYR 6750.0033
LEU 6760.0080
CYS 6770.0097
ASN 6780.0156
THR 6790.0171
PRO 6800.0169
PRO 6810.0253
HIS 6820.0229
TYR 6830.0162
HIS 6840.0206
GLY 6850.0190
PHE 6860.0130
PRO 6870.0083
VAL 6880.0038
ARG 6890.0048
LEU 6900.0087
PHE 6910.0108
ASP 6920.0201
THR 6930.0234
SER 6940.0369
SER 6950.0345
CYS 6960.0340
GLU 10.0455
ALA 20.0405
ALA 30.0326
ALA 40.0215
LYS 50.0195
MET 60.0134
GLN 70.0097
ARG 80.0092
LEU 90.0078
VAL 100.0072
LEU 110.0086
LEU 120.0079
LEU 130.0131
ALA 140.0137
ILE 150.0103
SER 160.0182
LEU 170.0301
LEU 180.0255
LEU 190.0088
TYR 200.0180
GLN 210.0387
ASP 220.0421
LEU 230.0279
PRO 240.0383
VAL 250.0166
ARG 260.0062
SER 270.0039
GLU 280.0115
PHE 290.0153
GLU 300.0078
LEU 310.0100
ASP 320.0087
ARG 330.0091
ILE 340.0097
CYS 350.0092
GLY 360.0171
TYR 370.0223
GLY 380.0139
THR 390.0085
ALA 400.0041
ARG 410.0055
CYS 420.0030
ARG 430.0039
LYS 440.0044
LYS 450.0033
CYS 460.0074
ARG 470.0134
SER 480.0185
GLN 490.0175
GLU 500.0111
TYR 510.0087
ARG 520.0054
ILE 530.0079
GLY 540.0072
ARG 550.0071
CYS 560.0067
PRO 570.0086
ASN 580.0083
THR 590.0094
TYR 600.0060
ALA 610.0024
CYS 620.0021
CYS 630.0041
LEU 640.0053
ARG 650.0075
LYS 660.0096
TRP 670.0141
ASP 680.0094
GLU 690.0119
SER 700.0219
LEU 710.0215
LEU 720.0133
ASN 730.0075
ARG 740.0226
THR 750.0239
LYS 760.0163
PRO 770.0207
GLU 780.0162
ALA 790.0186
ALA 800.0280
ALA 810.0203
LYS 820.0128
LYS 830.0114
GLU 840.0101
MET 850.0090
ASN 860.0163
LEU 870.0164
SER 880.0161
VAL 890.0159
GLY 900.0159
LEU 910.0104
GLY 920.0127
GLY 930.0158
GLY 940.0170
SER 950.0100
ASN 960.0126
LEU 970.0118
SER 980.0131
VAL 990.0139
GLY 1000.0144
LEU 1010.0075
GLY 1020.0144
GLU 1030.0215
ILE 1040.0284
GLY 1050.0345
GLY 1060.0102
GLY 1070.0192
SER 1080.0270
LYS 1090.0258
LEU 1100.0365
LEU 1110.0268
ASP 1120.0242
ILE 1130.0171
ASN 1140.0169
LEU 1150.0118
GLY 1160.0074
ARG 1170.0184
GLY 1180.0126
GLY 1190.0077
GLY 1200.0052
SER 1210.0087
MET 1220.0064
VAL 1230.0094
ASP 1240.0081
LEU 1250.0103
THR 1260.0071
PHE 1270.0036
GLY 1280.0083
GLY 1290.0110
VAL 1300.0151
GLY 1310.0251
GLY 1320.0208
GLY 1330.0116
SER 1340.0127
THR 1350.0110
PHE 1360.0132
THR 1370.0142
PHE 1380.0131
PHE 1390.0140
PRO 1400.0141
LEU 1410.0182
VAL 1420.0198
ILE 1430.0187
GLY 1440.0200
GLY 1450.0231
GLY 1460.0173
SER 1470.0154
ASP 1480.0121
ALA 1490.0118
MET 1500.0127
TYR 1510.0108
LEU 1520.0115
GLY 1530.0129
PHE 1540.0139
ALA 1550.0157
ALA 1560.0224
GLY 1570.0215
GLY 1580.0185
GLY 1590.0116
SER 1600.0059
ALA 1610.0161
GLY 1620.0173
GLY 1630.0182
GLU 1640.0168
ASN 1650.0162
HIS 1660.0092
VAL 1670.0071
ALA 1680.0027
PHE 1690.0024
GLY 1700.0059
PRO 1710.0416
GLY 1720.0380
PRO 1730.0366
GLY 1740.0219
VAL 1750.0139
ASP 1760.0066
LEU 1770.0074
THR 1780.0117
PHE 1790.0206
GLY 1800.0271
GLY 1810.0266
VAL 1820.0192
GLN 1830.0088
PHE 1840.0203
ALA 1850.0279
MET 1860.0384
VAL 1870.0460
ASN 1880.0280
ASN 1890.0190
GLY 1900.0320
PRO 1910.0340
GLY 1920.0278
PRO 1930.0295
GLY 1940.0201
GLU 1950.0035
SER 1960.0122
PHE 1970.0092
THR 1980.0073
ALA 1990.0060
GLN 2000.0048
PRO 2010.0020
ALA 2020.0017
ASP 2030.0023
MET 2040.0017
GLN 2050.0046
ALA 2060.0072
GLY 2070.0075
ILE 2080.0099
LYS 2090.0083
GLY 2100.0144
PRO 2110.0055
GLY 2120.0064
PRO 2130.0064
GLY 2140.0041
GLY 2150.0039
SER 2160.0141
ILE 2170.0089
GLN 2180.0108
VAL 2190.0086
ILE 2200.0120
ASN 2210.0247
GLY 2220.0246
SER 2230.0235
THR 2240.0182
ILE 2250.0182
GLY 2260.0140
THR 2270.0117
GLY 2280.0112
SER 2290.0097
LYS 2300.0120
LYS 2310.0136
THR 2320.0094
ILE 2330.0047
LEU 2340.0046
ILE 2350.0089
TYR 2360.0141
SER 2370.0124
ILE 2380.0107
ILE 2390.0088
GLY 2400.0073
VAL 2410.0199
LYS 2420.0152
LYS 2430.0137
GLY 2440.0100
THR 2450.0113
LEU 2460.0121
ALA 2470.0083
TRP 2480.0096
ALA 2490.0091
ARG 2500.0127
THR 2510.0149
GLY 2520.0159
PHE 2530.0061
SER 2540.0068
PRO 2550.0092
ALA 2560.0262
LYS 2570.0273
LYS 2580.0190
LEU 2590.0159
ASN 2600.0150
ALA 2610.0299
GLY 2620.0197
VAL 2630.0147
VAL 2640.0211
ARG 2650.0105
VAL 2660.0100
PHE 2670.0092
PHE 2680.0074
LEU 2690.0062
ASN 2700.0060
GLN 2710.0063
LYS 2720.0084
LYS 2730.0116
ALA 2740.0112
LYS 2750.0093
ASP 2760.0112
VAL 2770.0127
LEU 2780.0089
ARG 2790.0070
LYS 2800.0110
THR 2810.0187
SER 2820.0168
ARG 2830.0103
PRO 2840.0065
MET 2850.0138
VAL 2860.0192
ASP 2870.0208
LEU 2880.0147
THR 2890.0147
PHE 2900.0098
GLY 2910.0174
GLY 2920.0162

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Last modification: april 24th, 2026.