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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 101  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0859
THR 260.0070
LYS 270.0062
CYS 280.0047
THR 290.0029
VAL 300.0020
SER 310.0013
HIS 320.0015
GLU 330.0019
VAL 340.0024
ALA 350.0035
ASP 360.0036
CYS 370.0046
SER 380.0051
HIS 390.0060
LEU 400.0061
LYS 410.0055
LEU 420.0051
THR 430.0046
GLN 440.0045
VAL 450.0047
PRO 460.0053
ASP 470.0052
ASP 480.0051
LEU 490.0052
PRO 500.0051
THR 510.0046
ASN 520.0044
ILE 530.0043
THR 540.0043
VAL 550.0042
LEU 560.0040
ASN 570.0043
LEU 580.0046
THR 590.0049
HIS 600.0052
ASN 610.0047
GLN 620.0042
LEU 630.0037
ARG 640.0032
ARG 650.0030
LEU 660.0031
PRO 670.0027
ALA 680.0032
ALA 690.0030
ASN 700.0036
PHE 710.0039
THR 720.0036
ARG 730.0040
TYR 740.0045
SER 750.0046
GLN 760.0040
LEU 770.0038
THR 780.0042
SER 790.0040
LEU 800.0034
ASP 810.0033
VAL 820.0031
GLY 830.0032
PHE 840.0033
ASN 850.0030
THR 860.0023
ILE 870.0022
SER 880.0020
LYS 890.0022
LEU 900.0026
GLU 910.0032
PRO 920.0039
GLU 930.0042
LEU 940.0041
CYS 950.0048
GLN 960.0044
LYS 970.0044
LEU 980.0046
PRO 990.0052
MET 1000.0055
LEU 1010.0042
LYS 1020.0044
VAL 1030.0039
LEU 1040.0031
ASN 1050.0028
LEU 1060.0016
GLN 1070.0016
HIS 1080.0017
ASN 1090.0012
GLU 1100.0014
LEU 1110.0011
SER 1120.0020
GLN 1130.0023
LEU 1140.0020
SER 1150.0031
ASP 1160.0035
LYS 1170.0042
THR 1180.0031
PHE 1190.0032
ALA 1200.0043
PHE 1210.0047
CYS 1220.0042
THR 1230.0044
ASN 1240.0048
LEU 1250.0040
THR 1260.0030
GLU 1270.0025
LEU 1280.0015
HIS 1290.0013
LEU 1300.0006
MET 1310.0016
SER 1320.0023
ASN 1330.0019
SER 1340.0027
ILE 1350.0025
GLN 1360.0034
LYS 1370.0034
ILE 1380.0029
LYS 1390.0033
ASN 1400.0034
ASN 1410.0019
PRO 1420.0014
PHE 1430.0015
VAL 1440.0015
LYS 1450.0023
GLN 1460.0015
LYS 1470.0015
ASN 1480.0026
LEU 1490.0025
ILE 1500.0034
THR 1510.0025
LEU 1520.0021
ASP 1530.0023
LEU 1540.0024
SER 1550.0029
HIS 1560.0036
ASN 1570.0038
GLY 1580.0040
LEU 1590.0036
SER 1600.0035
SER 1610.0044
THR 1620.0044
LYS 1630.0041
LEU 1640.0039
GLY 1650.0037
THR 1660.0028
GLN 1670.0031
VAL 1680.0038
GLN 1690.0037
LEU 1700.0041
GLU 1710.0047
ASN 1720.0049
LEU 1730.0044
GLN 1740.0047
GLU 1750.0042
LEU 1760.0040
LEU 1770.0038
LEU 1780.0037
SER 1790.0035
ASN 1800.0034
ASN 1810.0038
LYS 1820.0032
ILE 1830.0029
GLN 1840.0027
ALA 1850.0035
LEU 1860.0039
LYS 1870.0054
SER 1880.0061
GLU 1890.0074
GLU 1900.0065
LEU 1910.0054
ASP 1920.0060
ILE 1930.0063
PHE 1940.0061
ALA 1950.0065
ASN 1960.0068
SER 1970.0063
SER 1980.0061
LEU 1990.0054
LYS 2000.0054
LYS 2010.0044
LEU 2020.0038
GLU 2030.0033
LEU 2040.0024
SER 2050.0021
SER 2060.0022
ASN 2070.0013
GLN 2080.0011
ILE 2090.0019
LYS 2100.0033
GLU 2110.0047
PHE 2120.0045
SER 2130.0063
PRO 2140.0071
GLY 2150.0067
CYS 2160.0056
PHE 2170.0042
HIS 2180.0054
ALA 2190.0067
ILE 2200.0060
GLY 2210.0067
ARG 2220.0056
LEU 2230.0043
PHE 2240.0040
GLY 2250.0033
LEU 2260.0018
PHE 2270.0020
LEU 2280.0016
ASN 2290.0030
ASN 2300.0036
VAL 2310.0029
GLN 2320.0038
LEU 2330.0038
GLY 2340.0050
PRO 2350.0054
SER 2360.0065
LEU 2370.0049
THR 2380.0045
GLU 2390.0055
LYS 2400.0050
LEU 2410.0039
CYS 2420.0041
LEU 2430.0053
GLU 2440.0045
LEU 2450.0030
ALA 2460.0045
ASN 2470.0043
THR 2480.0034
SER 2490.0025
ILE 2500.0016
ARG 2510.0017
ASN 2520.0024
LEU 2530.0025
SER 2540.0033
LEU 2550.0038
SER 2560.0046
ASN 2570.0049
SER 2580.0046
GLN 2590.0051
LEU 2600.0051
SER 2610.0043
THR 2620.0042
THR 2630.0042
SER 2640.0042
ASN 2650.0042
THR 2660.0055
THR 2670.0049
PHE 2680.0047
LEU 2690.0051
GLY 2700.0047
LEU 2710.0043
LYS 2720.0057
TRP 2730.0050
THR 2740.0035
ASN 2750.0031
LEU 2760.0036
THR 2770.0038
MET 2780.0039
LEU 2790.0041
ASP 2800.0041
LEU 2810.0041
SER 2820.0041
TYR 2830.0042
ASN 2840.0042
ASN 2850.0039
LEU 2860.0030
ASN 2870.0023
VAL 2880.0024
VAL 2890.0028
GLY 2900.0029
ASN 2910.0022
ASP 2920.0029
SER 2930.0036
PHE 2940.0040
ALA 2950.0038
TRP 2960.0047
LEU 2970.0044
PRO 2980.0047
GLN 2990.0041
LEU 3000.0041
GLU 3010.0039
TYR 3020.0038
PHE 3030.0034
PHE 3040.0032
LEU 3050.0027
GLU 3060.0032
TYR 3070.0028
ASN 3080.0022
ASN 3090.0015
ILE 3100.0014
GLN 3110.0005
HIS 3120.0008
LEU 3130.0007
PHE 3140.0007
SER 3150.0009
HIS 3160.0009
SER 3170.0014
LEU 3180.0019
HIS 3190.0017
GLY 3200.0024
LEU 3210.0024
PHE 3220.0025
ASN 3230.0030
VAL 3240.0028
ARG 3250.0030
TYR 3260.0028
LEU 3270.0020
ASN 3280.0024
LEU 3290.0018
LYS 3300.0027
ARG 3310.0024
SER 3320.0019
PHE 3330.0017
THR 3340.0016
LYS 3350.0020
GLN 3360.0032
SER 3370.0028
ILE 3380.0032
SER 3390.0030
LEU 3400.0034
ALA 3410.0040
SER 3420.0031
LEU 3430.0036
PRO 3440.0030
LYS 3450.0036
ILE 3460.0031
ASP 3470.0031
ASP 3480.0037
PHE 3490.0028
SER 3500.0017
PHE 3510.0014
GLN 3520.0012
TRP 3530.0005
LEU 3540.0006
LYS 3550.0007
CYS 3560.0009
LEU 3570.0011
GLU 3580.0020
HIS 3590.0025
LEU 3600.0025
ASN 3610.0032
MET 3620.0033
GLU 3630.0039
ASP 3640.0043
ASN 3650.0040
ASP 3660.0049
ILE 3670.0049
PRO 3680.0055
GLY 3690.0057
ILE 3700.0055
LYS 3710.0052
SER 3720.0051
ASN 3730.0044
MET 3740.0040
PHE 3750.0034
THR 3760.0031
GLY 3770.0024
LEU 3780.0020
ILE 3790.0017
ASN 3800.0014
LEU 3810.0020
LYS 3820.0022
TYR 3830.0029
LEU 3840.0034
SER 3850.0041
LEU 3860.0048
SER 3870.0052
ASN 3880.0056
SER 3890.0053
PHE 3900.0056
THR 3910.0062
SER 3920.0055
LEU 3930.0050
ARG 3940.0046
THR 3950.0042
LEU 3960.0048
THR 3970.0044
ASN 3980.0041
GLU 3990.0043
THR 4000.0047
PHE 4010.0041
VAL 4020.0039
SER 4030.0040
LEU 4040.0038
ALA 4050.0033
HIS 4060.0024
SER 4070.0024
PRO 4080.0023
LEU 4090.0025
HIS 4100.0027
ILE 4110.0029
LEU 4120.0030
ASN 4130.0036
LEU 4140.0037
THR 4150.0043
LYS 4160.0056
ASN 4170.0050
LYS 4180.0049
ILE 4190.0040
SER 4200.0037
LYS 4210.0041
ILE 4220.0042
GLU 4230.0040
SER 4240.0042
ASP 4250.0044
ALA 4260.0039
PHE 4270.0038
SER 4280.0034
TRP 4290.0035
LEU 4300.0036
GLY 4310.0027
HIS 4320.0030
LEU 4330.0028
GLU 4340.0033
VAL 4350.0031
LEU 4360.0029
ASP 4370.0032
LEU 4380.0032
GLY 4390.0036
LEU 4400.0038
ASN 4410.0048
GLU 4420.0047
ILE 4430.0045
GLY 4440.0044
GLN 4450.0042
GLU 4460.0061
LEU 4470.0055
THR 4480.0054
GLY 4490.0048
GLN 4500.0049
GLU 4510.0048
TRP 4520.0044
ARG 4530.0043
GLY 4540.0042
LEU 4550.0041
GLU 4560.0043
ASN 4570.0042
ILE 4580.0038
PHE 4590.0037
GLU 4600.0032
ILE 4610.0033
TYR 4620.0032
LEU 4630.0035
SER 4640.0031
TYR 4650.0033
ASN 4660.0049
LYS 4670.0053
TYR 4680.0052
LEU 4690.0048
GLN 4700.0049
LEU 4710.0053
THR 4720.0059
ARG 4730.0055
ASN 4740.0052
SER 4750.0047
PHE 4760.0039
ALA 4770.0041
LEU 4780.0042
VAL 4790.0035
PRO 4800.0026
SER 4810.0036
LEU 4820.0032
GLN 4830.0025
ARG 4840.0024
LEU 4850.0024
MET 4860.0019
LEU 4870.0021
ARG 4880.0020
ARG 4890.0025
VAL 4900.0032
ALA 4910.0040
LEU 4920.0033
LYS 4930.0040
ASN 4940.0041
VAL 4950.0029
ASP 4960.0035
SER 4970.0053
SER 4980.0067
PRO 4990.0061
SER 5000.0038
PRO 5010.0037
PHE 5020.0022
GLN 5030.0037
PRO 5040.0036
LEU 5050.0018
ARG 5060.0039
ASN 5070.0027
LEU 5080.0020
THR 5090.0035
ILE 5100.0029
LEU 5110.0021
ASP 5120.0021
LEU 5130.0017
SER 5140.0023
ASN 5150.0023
ASN 5160.0022
ASN 5170.0027
ILE 5180.0022
ALA 5190.0026
ASN 5200.0020
ILE 5210.0024
ASN 5220.0031
ASP 5230.0044
ASP 5240.0048
MET 5250.0035
LEU 5260.0042
GLU 5270.0056
GLY 5280.0064
LEU 5290.0054
GLU 5300.0070
LYS 5310.0068
LEU 5320.0061
GLU 5330.0068
ILE 5340.0061
LEU 5350.0052
ASP 5360.0047
LEU 5370.0043
GLN 5380.0043
HIS 5390.0041
ASN 5400.0038
ASN 5410.0055
LEU 5420.0055
ALA 5430.0054
ARG 5440.0059
LEU 5450.0058
TRP 5460.0063
LYS 5470.0076
HIS 5480.0093
ALA 5490.0110
ASN 5500.0109
PRO 5510.0156
GLY 5520.0150
GLY 5530.0113
PRO 5540.0070
ILE 5550.0066
TYR 5560.0057
PHE 5570.0063
LEU 5580.0060
LYS 5590.0063
GLY 5600.0072
LEU 5610.0071
SER 5620.0074
HIS 5630.0076
LEU 5640.0071
HIS 5650.0072
ILE 5660.0064
LEU 5670.0056
ASN 5680.0051
LEU 5690.0043
GLU 5700.0040
SER 5710.0041
ASN 5720.0043
GLY 5730.0040
PHE 5740.0041
ASP 5750.0043
GLU 5760.0051
ILE 5770.0045
PRO 5780.0052
VAL 5790.0047
GLU 5800.0048
VAL 5810.0049
PHE 5820.0045
LYS 5830.0047
ASP 5840.0055
LEU 5850.0054
PHE 5860.0044
GLU 5870.0050
LEU 5880.0047
LYS 5890.0047
ILE 5900.0046
ILE 5910.0034
ASP 5920.0032
LEU 5930.0022
GLY 5940.0024
LEU 5950.0022
ASN 5960.0019
ASN 5970.0018
LEU 5980.0024
ASN 5990.0032
THR 6000.0043
LEU 6010.0031
PRO 6020.0041
ALA 6030.0042
SER 6040.0034
VAL 6050.0027
PHE 6060.0016
ASN 6070.0023
ASN 6080.0025
GLN 6090.0019
VAL 6100.0015
SER 6110.0020
LEU 6120.0014
LYS 6130.0025
SER 6140.0023
LEU 6150.0012
ASN 6160.0014
LEU 6170.0018
GLN 6180.0022
LYS 6190.0026
ASN 6200.0025
LEU 6210.0040
ILE 6220.0037
THR 6230.0039
SER 6240.0036
VAL 6250.0031
GLU 6260.0032
LYS 6270.0036
LYS 6280.0035
VAL 6290.0025
PHE 6300.0025
GLY 6310.0030
PRO 6320.0025
ALA 6330.0018
PHE 6340.0026
ARG 6350.0031
ASN 6360.0026
LEU 6370.0026
THR 6380.0032
GLU 6390.0027
LEU 6400.0023
ASP 6410.0025
MET 6420.0028
ARG 6430.0032
PHE 6440.0037
ASN 6450.0037
PRO 6460.0054
PHE 6470.0039
ASP 6480.0034
CYS 6490.0020
THR 6500.0026
CYS 6510.0044
GLU 6520.0061
SER 6530.0050
ILE 6540.0028
ALA 6550.0028
TRP 6560.0018
PHE 6570.0022
VAL 6580.0022
ASN 6590.0023
TRP 6600.0032
ILE 6610.0041
ASN 6620.0036
GLU 6630.0043
THR 6640.0058
HIS 6650.0077
THR 6660.0033
ASN 6670.0030
ILE 6680.0026
PRO 6690.0029
GLU 6700.0034
LEU 6710.0033
SER 6720.0034
SER 6730.0040
HIS 6740.0040
TYR 6750.0034
LEU 6760.0054
CYS 6770.0042
ASN 6780.0054
THR 6790.0047
PRO 6800.0030
PRO 6810.0041
HIS 6820.0036
TYR 6830.0037
HIS 6840.0059
GLY 6850.0077
PHE 6860.0060
PRO 6870.0057
VAL 6880.0037
ARG 6890.0036
LEU 6900.0043
PHE 6910.0064
ASP 6920.0088
THR 6930.0082
SER 6940.0145
SER 6950.0152
CYS 6960.0138
GLU 10.0107
ALA 20.0057
ALA 30.0035
ALA 40.0051
LYS 50.0036
MET 60.0011
GLN 70.0011
ARG 80.0002
LEU 90.0012
VAL 100.0019
LEU 110.0016
LEU 120.0006
LEU 130.0014
ALA 140.0020
ILE 150.0014
SER 160.0027
LEU 170.0053
LEU 180.0043
LEU 190.0013
TYR 200.0041
GLN 210.0066
ASP 220.0056
LEU 230.0043
PRO 240.0046
VAL 250.0045
ARG 260.0055
SER 270.0053
GLU 280.0052
PHE 290.0066
GLU 300.0053
LEU 310.0038
ASP 320.0041
ARG 330.0051
ILE 340.0042
CYS 350.0041
GLY 360.0081
TYR 370.0094
GLY 380.0049
THR 390.0043
ALA 400.0033
ARG 410.0038
CYS 420.0031
ARG 430.0042
LYS 440.0048
LYS 450.0047
CYS 460.0051
ARG 470.0075
SER 480.0098
GLN 490.0089
GLU 500.0062
TYR 510.0058
ARG 520.0033
ILE 530.0042
GLY 540.0031
ARG 550.0028
CYS 560.0031
PRO 570.0045
ASN 580.0050
THR 590.0047
TYR 600.0036
ALA 610.0026
CYS 620.0028
CYS 630.0029
LEU 640.0035
ARG 650.0040
LYS 660.0123
TRP 670.0099
ASP 680.0075
GLU 690.0083
SER 700.0096
LEU 710.0113
LEU 720.0112
ASN 730.0129
ARG 740.0143
THR 750.0142
LYS 760.0162
PRO 770.0130
GLU 780.0098
ALA 790.0095
ALA 800.0110
ALA 810.0249
LYS 820.0184
LYS 830.0146
GLU 840.0097
MET 850.0069
ASN 860.0073
LEU 870.0044
SER 880.0046
VAL 890.0026
GLY 900.0026
LEU 910.0025
GLY 920.0054
GLY 930.0054
GLY 940.0065
SER 950.0044
ASN 960.0064
LEU 970.0062
SER 980.0077
VAL 990.0075
GLY 1000.0094
LEU 1010.0070
GLY 1020.0067
GLU 1030.0105
ILE 1040.0172
GLY 1050.0226
GLY 1060.0185
GLY 1070.0160
SER 1080.0155
LYS 1090.0111
LEU 1100.0103
LEU 1110.0058
ASP 1120.0038
ILE 1130.0043
ASN 1140.0034
LEU 1150.0058
GLY 1160.0052
ARG 1170.0138
GLY 1180.0117
GLY 1190.0107
GLY 1200.0077
SER 1210.0039
MET 1220.0038
VAL 1230.0037
ASP 1240.0037
LEU 1250.0038
THR 1260.0029
PHE 1270.0025
GLY 1280.0042
GLY 1290.0057
VAL 1300.0059
GLY 1310.0025
GLY 1320.0032
GLY 1330.0018
SER 1340.0037
THR 1350.0040
PHE 1360.0069
THR 1370.0065
PHE 1380.0057
PHE 1390.0059
PRO 1400.0058
LEU 1410.0073
VAL 1420.0090
ILE 1430.0116
GLY 1440.0153
GLY 1450.0168
GLY 1460.0136
SER 1470.0145
ASP 1480.0129
ALA 1490.0119
MET 1500.0070
TYR 1510.0093
LEU 1520.0062
GLY 1530.0054
PHE 1540.0058
ALA 1550.0066
ALA 1560.0070
GLY 1570.0044
GLY 1580.0026
GLY 1590.0003
SER 1600.0017
ALA 1610.0023
GLY 1620.0030
GLY 1630.0044
GLU 1640.0039
ASN 1650.0050
HIS 1660.0041
VAL 1670.0042
ALA 1680.0045
PHE 1690.0050
GLY 1700.0056
PRO 1710.0133
GLY 1720.0159
PRO 1730.0165
GLY 1740.0092
VAL 1750.0052
ASP 1760.0042
LEU 1770.0040
THR 1780.0043
PHE 1790.0059
GLY 1800.0073
GLY 1810.0082
VAL 1820.0056
GLN 1830.0034
PHE 1840.0043
ALA 1850.0063
MET 1860.0091
VAL 1870.0096
ASN 1880.0069
ASN 1890.0069
GLY 1900.0044
PRO 1910.0093
GLY 1920.0073
PRO 1930.0100
GLY 1940.0086
GLU 1950.0053
SER 1960.0079
PHE 1970.0014
THR 1980.0041
ALA 1990.0054
GLN 2000.0050
PRO 2010.0057
ALA 2020.0029
ASP 2030.0027
MET 2040.0022
GLN 2050.0047
ALA 2060.0104
GLY 2070.0071
ILE 2080.0023
LYS 2090.0071
GLY 2100.0116
PRO 2110.0113
GLY 2120.0056
PRO 2130.0111
GLY 2140.0227
GLY 2150.0133
SER 2160.0062
ILE 2170.0111
GLN 2180.0100
VAL 2190.0169
ILE 2200.0178
ASN 2210.0128
GLY 2220.0087
SER 2230.0239
THR 2240.0297
ILE 2250.0312
GLY 2260.0110
THR 2270.0246
GLY 2280.0258
SER 2290.0355
LYS 2300.0262
LYS 2310.0281
THR 2320.0305
ILE 2330.0239
LEU 2340.0222
ILE 2350.0251
TYR 2360.0197
SER 2370.0186
ILE 2380.0181
ILE 2390.0170
GLY 2400.0166
VAL 2410.0496
LYS 2420.0404
LYS 2430.0376
GLY 2440.0190
THR 2450.0160
LEU 2460.0175
ALA 2470.0098
TRP 2480.0080
ALA 2490.0075
ARG 2500.0135
THR 2510.0389
GLY 2520.0411
PHE 2530.0428
SER 2540.0474
PRO 2550.0479
ALA 2560.0481
LYS 2570.0357
LYS 2580.0320
LEU 2590.0485
ASN 2600.0811
ALA 2610.0859
GLY 2620.0453
VAL 2630.0444
VAL 2640.0511
ARG 2650.0118
VAL 2660.0030
PHE 2670.0052
PHE 2680.0071
LEU 2690.0086
ASN 2700.0113
GLN 2710.0238
LYS 2720.0248
LYS 2730.0192
ALA 2740.0149
LYS 2750.0176
ASP 2760.0246
VAL 2770.0270
LEU 2780.0233
ARG 2790.0158
LYS 2800.0187
THR 2810.0412
SER 2820.0498
ARG 2830.0233
PRO 2840.0324
MET 2850.0406
VAL 2860.0370
ASP 2870.0387
LEU 2880.0257
THR 2890.0237
PHE 2900.0187
GLY 2910.0336
GLY 2920.0301

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.