CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 11  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0869
THR 260.0051
LYS 270.0044
CYS 280.0035
THR 290.0023
VAL 300.0022
SER 310.0016
HIS 320.0026
GLU 330.0032
VAL 340.0025
ALA 350.0028
ASP 360.0025
CYS 370.0037
SER 380.0037
HIS 390.0046
LEU 400.0052
LYS 410.0063
LEU 420.0064
THR 430.0074
GLN 440.0073
VAL 450.0065
PRO 460.0062
ASP 470.0068
ASP 480.0061
LEU 490.0051
PRO 500.0051
THR 510.0060
ASN 520.0053
ILE 530.0045
THR 540.0044
VAL 550.0034
LEU 560.0037
ASN 570.0032
LEU 580.0042
THR 590.0039
HIS 600.0048
ASN 610.0056
GLN 620.0068
LEU 630.0068
ARG 640.0077
ARG 650.0077
LEU 660.0073
PRO 670.0082
ALA 680.0083
ALA 690.0088
ASN 700.0078
PHE 710.0072
THR 720.0081
ARG 730.0074
TYR 740.0064
SER 750.0070
GLN 760.0062
LEU 770.0053
THR 780.0048
SER 790.0039
LEU 800.0042
ASP 810.0036
VAL 820.0045
GLY 830.0041
PHE 840.0048
ASN 850.0058
THR 860.0068
ILE 870.0068
SER 880.0075
LYS 890.0077
LEU 900.0072
GLU 910.0080
PRO 920.0081
GLU 930.0086
LEU 940.0075
CYS 950.0072
GLN 960.0083
LYS 970.0080
LEU 980.0069
PRO 990.0073
MET 1000.0063
LEU 1010.0055
LYS 1020.0047
VAL 1030.0039
LEU 1040.0042
ASN 1050.0037
LEU 1060.0045
GLN 1070.0040
HIS 1080.0047
ASN 1090.0056
GLU 1100.0065
LEU 1110.0062
SER 1120.0063
GLN 1130.0068
LEU 1140.0065
SER 1150.0072
ASP 1160.0073
LYS 1170.0079
THR 1180.0071
PHE 1190.0065
ALA 1200.0073
PHE 1210.0076
CYS 1220.0065
THR 1230.0066
ASN 1240.0060
LEU 1250.0050
THR 1260.0042
GLU 1270.0035
LEU 1280.0037
HIS 1290.0033
LEU 1300.0039
MET 1310.0036
SER 1320.0043
ASN 1330.0051
SER 1340.0054
ILE 1350.0052
GLN 1360.0053
LYS 1370.0054
ILE 1380.0053
LYS 1390.0061
ASN 1400.0064
ASN 1410.0061
PRO 1420.0060
PHE 1430.0054
VAL 1440.0060
LYS 1450.0064
GLN 1460.0055
LYS 1470.0057
ASN 1480.0053
LEU 1490.0044
ILE 1500.0036
THR 1510.0028
LEU 1520.0030
ASP 1530.0027
LEU 1540.0031
SER 1550.0028
HIS 1560.0035
ASN 1570.0041
GLY 1580.0045
LEU 1590.0039
SER 1600.0038
SER 1610.0034
THR 1620.0030
LYS 1630.0037
LEU 1640.0042
GLY 1650.0049
THR 1660.0053
GLN 1670.0054
VAL 1680.0050
GLN 1690.0050
LEU 1700.0045
GLU 1710.0046
ASN 1720.0044
LEU 1730.0035
GLN 1740.0029
GLU 1750.0021
LEU 1760.0021
LEU 1770.0019
LEU 1780.0022
SER 1790.0021
ASN 1800.0029
ASN 1810.0033
LYS 1820.0035
ILE 1830.0028
GLN 1840.0027
ALA 1850.0020
LEU 1860.0017
LYS 1870.0019
SER 1880.0021
GLU 1890.0029
GLU 1900.0030
LEU 1910.0027
ASP 1920.0033
ILE 1930.0039
PHE 1940.0034
ALA 1950.0037
ASN 1960.0043
SER 1970.0036
SER 1980.0033
LEU 1990.0024
LYS 2000.0022
LYS 2010.0014
LEU 2020.0012
GLU 2030.0010
LEU 2040.0012
SER 2050.0015
SER 2060.0024
ASN 2070.0024
GLN 2080.0026
ILE 2090.0020
LYS 2100.0022
GLU 2110.0016
PHE 2120.0009
SER 2130.0009
PRO 2140.0006
GLY 2150.0012
CYS 2160.0012
PHE 2170.0012
HIS 2180.0019
ALA 2190.0023
ILE 2200.0025
GLY 2210.0030
ARG 2220.0027
LEU 2230.0020
PHE 2240.0020
GLY 2250.0012
LEU 2260.0006
PHE 2270.0006
LEU 2280.0010
ASN 2290.0015
ASN 2300.0022
VAL 2310.0021
GLN 2320.0026
LEU 2330.0024
GLY 2340.0029
PRO 2350.0030
SER 2360.0029
LEU 2370.0022
THR 2380.0021
GLU 2390.0023
LYS 2400.0017
LEU 2410.0012
CYS 2420.0017
LEU 2430.0017
GLU 2440.0010
LEU 2450.0014
ALA 2460.0019
ASN 2470.0024
THR 2480.0021
SER 2490.0024
ILE 2500.0019
ARG 2510.0021
ASN 2520.0016
LEU 2530.0013
SER 2540.0012
LEU 2550.0017
SER 2560.0019
ASN 2570.0024
SER 2580.0023
GLN 2590.0030
LEU 2600.0030
SER 2610.0037
THR 2620.0038
THR 2630.0036
SER 2640.0039
ASN 2650.0041
THR 2660.0036
THR 2670.0031
PHE 2680.0028
LEU 2690.0031
GLY 2700.0025
LEU 2710.0025
LYS 2720.0031
TRP 2730.0029
THR 2740.0026
ASN 2750.0029
LEU 2760.0024
THR 2770.0025
MET 2780.0020
LEU 2790.0020
ASP 2800.0019
LEU 2810.0023
SER 2820.0023
TYR 2830.0026
ASN 2840.0029
ASN 2850.0034
LEU 2860.0035
ASN 2870.0041
VAL 2880.0043
VAL 2890.0041
GLY 2900.0044
ASN 2910.0047
ASP 2920.0044
SER 2930.0039
PHE 2940.0036
ALA 2950.0040
TRP 2960.0036
LEU 2970.0033
PRO 2980.0037
GLN 2990.0033
LEU 3000.0029
GLU 3010.0028
TYR 3020.0023
PHE 3030.0025
PHE 3040.0023
LEU 3050.0027
GLU 3060.0026
TYR 3070.0028
ASN 3080.0032
ASN 3090.0038
ILE 3100.0040
GLN 3110.0045
HIS 3120.0047
LEU 3130.0045
PHE 3140.0048
SER 3150.0050
HIS 3160.0049
SER 3170.0044
LEU 3180.0040
HIS 3190.0044
GLY 3200.0042
LEU 3210.0038
PHE 3220.0040
ASN 3230.0036
VAL 3240.0032
ARG 3250.0030
TYR 3260.0026
LEU 3270.0028
ASN 3280.0026
LEU 3290.0030
LYS 3300.0028
ARG 3310.0031
SER 3320.0033
PHE 3330.0038
THR 3340.0041
LYS 3350.0042
GLN 3360.0045
SER 3370.0049
ILE 3380.0052
SER 3390.0057
LEU 3400.0057
ALA 3410.0054
SER 3420.0052
LEU 3430.0048
PRO 3440.0046
LYS 3450.0048
ILE 3460.0047
ASP 3470.0051
ASP 3480.0052
PHE 3490.0050
SER 3500.0046
PHE 3510.0043
GLN 3520.0047
TRP 3530.0044
LEU 3540.0040
LYS 3550.0042
CYS 3560.0038
LEU 3570.0035
GLU 3580.0032
HIS 3590.0028
LEU 3600.0030
ASN 3610.0027
MET 3620.0031
GLU 3630.0028
ASP 3640.0031
ASN 3650.0036
ASP 3660.0039
ILE 3670.0041
PRO 3680.0044
GLY 3690.0043
ILE 3700.0043
LYS 3710.0048
SER 3720.0050
ASN 3730.0050
MET 3740.0046
PHE 3750.0042
THR 3760.0046
GLY 3770.0046
LEU 3780.0041
ILE 3790.0043
ASN 3800.0038
LEU 3810.0035
LYS 3820.0032
TYR 3830.0028
LEU 3840.0029
SER 3850.0027
LEU 3860.0030
SER 3870.0027
ASN 3880.0030
SER 3890.0034
PHE 3900.0037
THR 3910.0038
SER 3920.0036
LEU 3930.0034
ARG 3940.0033
THR 3950.0034
LEU 3960.0033
THR 3970.0037
ASN 3980.0039
GLU 3990.0042
THR 4000.0039
PHE 4010.0039
VAL 4020.0043
SER 4030.0044
LEU 4040.0040
ALA 4050.0042
HIS 4060.0043
SER 4070.0039
PRO 4080.0037
LEU 4090.0033
HIS 4100.0029
ILE 4110.0026
LEU 4120.0027
ASN 4130.0026
LEU 4140.0027
THR 4150.0025
LYS 4160.0027
ASN 4170.0030
LYS 4180.0029
ILE 4190.0028
SER 4200.0026
LYS 4210.0027
ILE 4220.0028
GLU 4230.0031
SER 4240.0032
ASP 4250.0034
ALA 4260.0034
PHE 4270.0033
SER 4280.0036
TRP 4290.0038
LEU 4300.0035
GLY 4310.0035
HIS 4320.0033
LEU 4330.0030
GLU 4340.0026
VAL 4350.0024
LEU 4360.0024
ASP 4370.0023
LEU 4380.0023
GLY 4390.0022
LEU 4400.0025
ASN 4410.0026
GLU 4420.0025
ILE 4430.0023
GLY 4440.0021
GLN 4450.0021
GLU 4460.0021
LEU 4470.0022
THR 4480.0024
GLY 4490.0025
GLN 4500.0027
GLU 4510.0027
TRP 4520.0027
ARG 4530.0031
GLY 4540.0033
LEU 4550.0030
GLU 4560.0031
ASN 4570.0030
ILE 4580.0026
PHE 4590.0023
GLU 4600.0020
ILE 4610.0021
TYR 4620.0021
LEU 4630.0021
SER 4640.0023
TYR 4650.0026
ASN 4660.0024
LYS 4670.0024
TYR 4680.0022
LEU 4690.0021
GLN 4700.0021
LEU 4710.0022
THR 4720.0023
ARG 4730.0026
ASN 4740.0025
SER 4750.0022
PHE 4760.0022
ALA 4770.0025
LEU 4780.0026
VAL 4790.0025
PRO 4800.0026
SER 4810.0024
LEU 4820.0022
GLN 4830.0021
ARG 4840.0020
LEU 4850.0020
MET 4860.0021
LEU 4870.0023
ARG 4880.0026
ARG 4890.0028
VAL 4900.0025
ALA 4910.0027
LEU 4920.0025
LYS 4930.0026
ASN 4940.0027
VAL 4950.0028
ASP 4960.0033
SER 4970.0031
SER 4980.0035
PRO 4990.0033
SER 5000.0029
PRO 5010.0024
PHE 5020.0023
GLN 5030.0026
PRO 5040.0025
LEU 5050.0022
ARG 5060.0022
ASN 5070.0020
LEU 5080.0019
THR 5090.0019
ILE 5100.0021
LEU 5110.0022
ASP 5120.0025
LEU 5130.0028
SER 5140.0032
ASN 5150.0036
ASN 5160.0034
ASN 5170.0041
ILE 5180.0038
ALA 5190.0044
ASN 5200.0041
ILE 5210.0037
ASN 5220.0038
ASP 5230.0039
ASP 5240.0035
MET 5250.0031
LEU 5260.0027
GLU 5270.0029
GLY 5280.0027
LEU 5290.0023
GLU 5300.0022
LYS 5310.0018
LEU 5320.0019
GLU 5330.0020
ILE 5340.0024
LEU 5350.0027
ASP 5360.0031
LEU 5370.0035
GLN 5380.0041
HIS 5390.0045
ASN 5400.0044
ASN 5410.0050
LEU 5420.0048
ALA 5430.0055
ARG 5440.0058
LEU 5450.0053
TRP 5460.0054
LYS 5470.0062
HIS 5480.0066
ALA 5490.0071
ASN 5500.0065
PRO 5510.0067
GLY 5520.0064
GLY 5530.0061
PRO 5540.0055
ILE 5550.0047
TYR 5560.0042
PHE 5570.0036
LEU 5580.0033
LYS 5590.0033
GLY 5600.0029
LEU 5610.0024
SER 5620.0021
HIS 5630.0018
LEU 5640.0022
HIS 5650.0024
ILE 5660.0029
LEU 5670.0032
ASN 5680.0037
LEU 5690.0042
GLU 5700.0048
SER 5710.0054
ASN 5720.0052
GLY 5730.0060
PHE 5740.0058
ASP 5750.0065
GLU 5760.0062
ILE 5770.0054
PRO 5780.0054
VAL 5790.0051
GLU 5800.0045
VAL 5810.0042
PHE 5820.0036
LYS 5830.0035
ASP 5840.0028
LEU 5850.0026
PHE 5860.0021
GLU 5870.0019
LEU 5880.0025
LYS 5890.0028
ILE 5900.0034
ILE 5910.0038
ASP 5920.0044
LEU 5930.0049
GLY 5940.0056
LEU 5950.0062
ASN 5960.0063
ASN 5970.0069
LEU 5980.0066
ASN 5990.0071
THR 6000.0070
LEU 6010.0060
PRO 6020.0059
ALA 6030.0054
SER 6040.0046
VAL 6050.0045
PHE 6060.0039
ASN 6070.0035
ASN 6080.0028
GLN 6090.0028
VAL 6100.0023
SER 6110.0023
LEU 6120.0030
LYS 6130.0035
SER 6140.0041
LEU 6150.0045
ASN 6160.0051
LEU 6170.0057
GLN 6180.0065
LYS 6190.0072
ASN 6200.0071
LEU 6210.0077
ILE 6220.0073
THR 6230.0079
SER 6240.0074
VAL 6250.0065
GLU 6260.0060
LYS 6270.0052
LYS 6280.0051
VAL 6290.0050
PHE 6300.0048
GLY 6310.0042
PRO 6320.0034
ALA 6330.0037
PHE 6340.0041
ARG 6350.0035
ASN 6360.0033
LEU 6370.0040
THR 6380.0045
GLU 6390.0051
LEU 6400.0054
ASP 6410.0060
MET 6420.0064
ARG 6430.0073
PHE 6440.0081
ASN 6450.0079
PRO 6460.0087
PHE 6470.0084
ASP 6480.0088
CYS 6490.0090
THR 6500.0090
CYS 6510.0082
GLU 6520.0079
SER 6530.0077
ILE 6540.0074
ALA 6550.0072
TRP 6560.0061
PHE 6570.0063
VAL 6580.0069
ASN 6590.0061
TRP 6600.0055
ILE 6610.0062
ASN 6620.0066
GLU 6630.0053
THR 6640.0050
HIS 6650.0054
THR 6660.0052
ASN 6670.0060
ILE 6680.0064
PRO 6690.0072
GLU 6700.0081
LEU 6710.0079
SER 6720.0089
SER 6730.0093
HIS 6740.0087
TYR 6750.0083
LEU 6760.0092
CYS 6770.0094
ASN 6780.0100
THR 6790.0101
PRO 6800.0107
PRO 6810.0116
HIS 6820.0116
TYR 6830.0107
HIS 6840.0110
GLY 6850.0108
PHE 6860.0104
PRO 6870.0094
VAL 6880.0085
ARG 6890.0082
LEU 6900.0091
PHE 6910.0088
ASP 6920.0088
THR 6930.0079
SER 6940.0081
SER 6950.0087
CYS 6960.0080
GLU 10.0056
ALA 20.0055
ALA 30.0055
ALA 40.0052
LYS 50.0049
MET 60.0049
GLN 70.0048
ARG 80.0044
LEU 90.0043
VAL 100.0044
LEU 110.0040
LEU 120.0036
LEU 130.0036
ALA 140.0037
ILE 150.0033
SER 160.0028
LEU 170.0031
LEU 180.0033
LEU 190.0030
TYR 200.0029
GLN 210.0032
ASP 220.0034
LEU 230.0033
PRO 240.0036
VAL 250.0035
ARG 260.0044
SER 270.0050
GLU 280.0044
PHE 290.0055
GLU 300.0059
LEU 310.0049
ASP 320.0040
ARG 330.0046
ILE 340.0044
CYS 350.0034
GLY 360.0036
TYR 370.0047
GLY 380.0051
THR 390.0050
ALA 400.0039
ARG 410.0039
CYS 420.0034
ARG 430.0035
LYS 440.0036
LYS 450.0031
CYS 460.0024
ARG 470.0030
SER 480.0024
GLN 490.0032
GLU 500.0027
TYR 510.0019
ARG 520.0015
ILE 530.0021
GLY 540.0015
ARG 550.0013
CYS 560.0021
PRO 570.0023
ASN 580.0031
THR 590.0025
TYR 600.0027
ALA 610.0020
CYS 620.0021
CYS 630.0026
LEU 640.0033
ARG 650.0039
LYS 660.0040
TRP 670.0047
ASP 680.0057
GLU 690.0069
SER 700.0075
LEU 710.0064
LEU 720.0071
ASN 730.0082
ARG 740.0073
THR 750.0066
LYS 760.0082
PRO 770.0077
GLU 780.0081
ALA 790.0081
ALA 800.0072
ALA 810.0090
LYS 820.0108
LYS 830.0092
GLU 840.0119
MET 850.0109
ASN 860.0128
LEU 870.0116
SER 880.0133
VAL 890.0133
GLY 900.0151
LEU 910.0165
GLY 920.0183
GLY 930.0209
GLY 940.0206
SER 950.0195
ASN 960.0179
LEU 970.0164
SER 980.0159
VAL 990.0144
GLY 1000.0151
LEU 1010.0140
GLY 1020.0162
GLU 1030.0153
ILE 1040.0181
GLY 1050.0187
GLY 1060.0173
GLY 1070.0150
SER 1080.0120
LYS 1090.0118
LEU 1100.0104
LEU 1110.0101
ASP 1120.0112
ILE 1130.0122
ASN 1140.0135
LEU 1150.0142
GLY 1160.0166
ARG 1170.0175
GLY 1180.0187
GLY 1190.0179
GLY 1200.0172
SER 1210.0155
MET 1220.0140
VAL 1230.0122
ASP 1240.0112
LEU 1250.0091
THR 1260.0088
PHE 1270.0071
GLY 1280.0075
GLY 1290.0055
VAL 1300.0052
GLY 1310.0032
GLY 1320.0032
GLY 1330.0017
SER 1340.0022
THR 1350.0009
PHE 1360.0019
THR 1370.0015
PHE 1380.0032
PHE 1390.0034
PRO 1400.0051
LEU 1410.0049
VAL 1420.0072
ILE 1430.0069
GLY 1440.0084
GLY 1450.0099
GLY 1460.0087
SER 1470.0082
ASP 1480.0100
ALA 1490.0078
MET 1500.0071
TYR 1510.0048
LEU 1520.0045
GLY 1530.0026
PHE 1540.0025
ALA 1550.0018
ALA 1560.0021
GLY 1570.0018
GLY 1580.0021
GLY 1590.0016
SER 1600.0012
ALA 1610.0012
GLY 1620.0020
GLY 1630.0042
GLU 1640.0059
ASN 1650.0061
HIS 1660.0082
VAL 1670.0083
ALA 1680.0106
PHE 1690.0112
GLY 1700.0134
PRO 1710.0150
GLY 1720.0147
PRO 1730.0130
GLY 1740.0120
VAL 1750.0103
ASP 1760.0106
LEU 1770.0084
THR 1780.0084
PHE 1790.0064
GLY 1800.0066
GLY 1810.0092
VAL 1820.0095
GLN 1830.0107
PHE 1840.0102
ALA 1850.0119
MET 1860.0114
VAL 1870.0124
ASN 1880.0113
ASN 1890.0109
GLY 1900.0101
PRO 1910.0104
GLY 1920.0077
PRO 1930.0097
GLY 1940.0171
GLU 1950.0212
SER 1960.0259
PHE 1970.0295
THR 1980.0330
ALA 1990.0354
GLN 2000.0401
PRO 2010.0433
ALA 2020.0474
ASP 2030.0441
MET 2040.0431
GLN 2050.0479
ALA 2060.0443
GLY 2070.0404
ILE 2080.0296
LYS 2090.0247
GLY 2100.0164
PRO 2110.0068
GLY 2120.0046
PRO 2130.0018
GLY 2140.0027
GLY 2150.0018
SER 2160.0032
ILE 2170.0030
GLN 2180.0066
VAL 2190.0083
ILE 2200.0117
ASN 2210.0142
GLY 2220.0160
SER 2230.0202
THR 2240.0225
ILE 2250.0246
GLY 2260.0300
THR 2270.0305
GLY 2280.0284
SER 2290.0246
LYS 2300.0215
LYS 2310.0188
THR 2320.0169
ILE 2330.0147
LEU 2340.0146
ILE 2350.0103
TYR 2360.0119
SER 2370.0100
ILE 2380.0100
ILE 2390.0127
GLY 2400.0117
VAL 2410.0105
LYS 2420.0134
LYS 2430.0112
GLY 2440.0134
THR 2450.0167
LEU 2460.0162
ALA 2470.0184
TRP 2480.0192
ALA 2490.0200
ARG 2500.0205
THR 2510.0197
GLY 2520.0218
PHE 2530.0184
SER 2540.0204
PRO 2550.0178
ALA 2560.0154
LYS 2570.0147
LYS 2580.0116
LEU 2590.0062
ASN 2600.0075
ALA 2610.0097
GLY 2620.0059
VAL 2630.0047
VAL 2640.0041
ARG 2650.0045
VAL 2660.0043
PHE 2670.0097
PHE 2680.0141
LEU 2690.0190
ASN 2700.0215
GLN 2710.0227
LYS 2720.0326
LYS 2730.0399
ALA 2740.0374
LYS 2750.0470
ASP 2760.0588
VAL 2770.0550
LEU 2780.0549
ARG 2790.0714
LYS 2800.0768
THR 2810.0754
SER 2820.0717
ARG 2830.0590
PRO 2840.0534
MET 2850.0334
VAL 2860.0352
ASP 2870.0235
LEU 2880.0248
THR 2890.0339
PHE 2900.0557
GLY 2910.0726
GLY 2920.0869

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.