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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 13  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0809
THR 260.0056
LYS 270.0063
CYS 280.0065
THR 290.0067
VAL 300.0074
SER 310.0074
HIS 320.0081
GLU 330.0083
VAL 340.0075
ALA 350.0071
ASP 360.0064
CYS 370.0062
SER 380.0054
HIS 390.0048
LEU 400.0054
LYS 410.0053
LEU 420.0060
THR 430.0063
GLN 440.0070
VAL 450.0072
PRO 460.0077
ASP 470.0085
ASP 480.0088
LEU 490.0085
PRO 500.0091
THR 510.0094
ASN 520.0093
ILE 530.0085
THR 540.0081
VAL 550.0073
LEU 560.0069
ASN 570.0062
LEU 580.0059
THR 590.0051
HIS 600.0046
ASN 610.0051
GLN 620.0053
LEU 630.0057
ARG 640.0058
ARG 650.0062
LEU 660.0066
PRO 670.0074
ALA 680.0078
ALA 690.0086
ASN 700.0083
PHE 710.0081
THR 720.0089
ARG 730.0092
TYR 740.0085
SER 750.0088
GLN 760.0087
LEU 770.0079
THR 780.0074
SER 790.0067
LEU 800.0063
ASP 810.0056
VAL 820.0054
GLY 830.0046
PHE 840.0041
ASN 850.0046
THR 860.0047
ILE 870.0051
SER 880.0050
LYS 890.0055
LEU 900.0057
GLU 910.0064
PRO 920.0065
GLU 930.0073
LEU 940.0071
CYS 950.0069
GLN 960.0077
LYS 970.0081
LEU 980.0077
PRO 990.0078
MET 1000.0077
LEU 1010.0068
LYS 1020.0064
VAL 1030.0058
LEU 1040.0054
ASN 1050.0048
LEU 1060.0045
GLN 1070.0038
HIS 1080.0035
ASN 1090.0040
GLU 1100.0040
LEU 1110.0041
SER 1120.0036
GLN 1130.0039
LEU 1140.0040
SER 1150.0044
ASP 1160.0045
LYS 1170.0053
THR 1180.0052
PHE 1190.0051
ALA 1200.0054
PHE 1210.0062
CYS 1220.0060
THR 1230.0060
ASN 1240.0063
LEU 1250.0057
THR 1260.0054
GLU 1270.0049
LEU 1280.0044
HIS 1290.0040
LEU 1300.0035
MET 1310.0030
SER 1320.0027
ASN 1330.0031
SER 1340.0026
ILE 1350.0027
GLN 1360.0022
LYS 1370.0023
ILE 1380.0025
LYS 1390.0029
ASN 1400.0031
ASN 1410.0033
PRO 1420.0038
PHE 1430.0038
VAL 1440.0040
LYS 1450.0048
GLN 1460.0047
LYS 1470.0048
ASN 1480.0053
LEU 1490.0047
ILE 1500.0047
THR 1510.0041
LEU 1520.0035
ASP 1530.0031
LEU 1540.0025
SER 1550.0021
HIS 1560.0018
ASN 1570.0018
GLY 1580.0015
LEU 1590.0014
SER 1600.0008
SER 1610.0008
THR 1620.0013
LYS 1630.0014
LEU 1640.0022
GLY 1650.0023
THR 1660.0020
GLN 1670.0024
VAL 1680.0027
GLN 1690.0033
LEU 1700.0037
GLU 1710.0039
ASN 1720.0044
LEU 1730.0039
GLN 1740.0040
GLU 1750.0036
LEU 1760.0028
LEU 1770.0025
LEU 1780.0018
SER 1790.0016
ASN 1800.0011
ASN 1810.0009
LYS 1820.0005
ILE 1830.0005
GLN 1840.0004
ALA 1850.0008
LEU 1860.0011
LYS 1870.0011
SER 1880.0015
GLU 1890.0011
GLU 1900.0012
LEU 1910.0016
ASP 1920.0018
ILE 1930.0022
PHE 1940.0027
ALA 1950.0028
ASN 1960.0034
SER 1970.0034
SER 1980.0038
LEU 1990.0034
LYS 2000.0038
LYS 2010.0032
LEU 2020.0026
GLU 2030.0023
LEU 2040.0017
SER 2050.0016
SER 2060.0011
ASN 2070.0009
GLN 2080.0008
ILE 2090.0011
LYS 2100.0013
GLU 2110.0016
PHE 2120.0018
SER 2130.0018
PRO 2140.0022
GLY 2150.0023
CYS 2160.0020
PHE 2170.0024
HIS 2180.0027
ALA 2190.0024
ILE 2200.0027
GLY 2210.0032
ARG 2220.0035
LEU 2230.0032
PHE 2240.0036
GLY 2250.0032
LEU 2260.0027
PHE 2270.0024
LEU 2280.0020
ASN 2290.0019
ASN 2300.0015
VAL 2310.0015
GLN 2320.0016
LEU 2330.0020
GLY 2340.0022
PRO 2350.0026
SER 2360.0026
LEU 2370.0023
THR 2380.0025
GLU 2390.0029
LYS 2400.0027
LEU 2410.0026
CYS 2420.0030
LEU 2430.0032
GLU 2440.0029
LEU 2450.0031
ALA 2460.0036
ASN 2470.0038
THR 2480.0036
SER 2490.0037
ILE 2500.0034
ARG 2510.0036
ASN 2520.0032
LEU 2530.0029
SER 2540.0026
LEU 2550.0024
SER 2560.0021
ASN 2570.0019
SER 2580.0021
GLN 2590.0021
LEU 2600.0024
SER 2610.0024
THR 2620.0026
THR 2630.0028
SER 2640.0031
ASN 2650.0034
THR 2660.0035
THR 2670.0032
PHE 2680.0033
LEU 2690.0036
GLY 2700.0036
LEU 2710.0036
LYS 2720.0040
TRP 2730.0040
THR 2740.0038
ASN 2750.0039
LEU 2760.0036
THR 2770.0035
MET 2780.0031
LEU 2790.0030
ASP 2800.0026
LEU 2810.0025
SER 2820.0022
TYR 2830.0021
ASN 2840.0022
ASN 2850.0022
LEU 2860.0024
ASN 2870.0024
VAL 2880.0026
VAL 2890.0027
GLY 2900.0029
ASN 2910.0031
ASP 2920.0032
SER 2930.0032
PHE 2940.0031
ALA 2950.0033
TRP 2960.0036
LEU 2970.0035
PRO 2980.0036
GLN 2990.0036
LEU 3000.0033
GLU 3010.0029
TYR 3020.0028
PHE 3030.0026
PHE 3040.0024
LEU 3050.0023
GLU 3060.0020
TYR 3070.0019
ASN 3080.0021
ASN 3090.0021
ILE 3100.0021
GLN 3110.0021
HIS 3120.0022
LEU 3130.0022
PHE 3140.0024
SER 3150.0024
HIS 3160.0028
SER 3170.0027
LEU 3180.0026
HIS 3190.0029
GLY 3200.0031
LEU 3210.0029
PHE 3220.0029
ASN 3230.0030
VAL 3240.0027
ARG 3250.0026
TYR 3260.0024
LEU 3270.0022
ASN 3280.0021
LEU 3290.0019
LYS 3300.0017
ARG 3310.0017
SER 3320.0019
PHE 3330.0018
THR 3340.0019
LYS 3350.0016
GLN 3360.0015
SER 3370.0017
ILE 3380.0016
SER 3390.0019
LEU 3400.0021
ALA 3410.0018
SER 3420.0019
LEU 3430.0017
PRO 3440.0018
LYS 3450.0018
ILE 3460.0018
ASP 3470.0019
ASP 3480.0017
PHE 3490.0018
SER 3500.0020
PHE 3510.0020
GLN 3520.0021
TRP 3530.0024
LEU 3540.0023
LYS 3550.0023
CYS 3560.0024
LEU 3570.0022
GLU 3580.0021
HIS 3590.0021
LEU 3600.0018
ASN 3610.0017
MET 3620.0015
GLU 3630.0014
ASP 3640.0013
ASN 3650.0014
ASP 3660.0013
ILE 3670.0012
PRO 3680.0011
GLY 3690.0008
ILE 3700.0007
LYS 3710.0009
SER 3720.0007
ASN 3730.0010
MET 3740.0012
PHE 3750.0012
THR 3760.0012
GLY 3770.0015
LEU 3780.0016
ILE 3790.0017
ASN 3800.0020
LEU 3810.0017
LYS 3820.0019
TYR 3830.0018
LEU 3840.0014
SER 3850.0014
LEU 3860.0010
SER 3870.0010
ASN 3880.0010
SER 3890.0011
PHE 3900.0009
THR 3910.0012
SER 3920.0009
LEU 3930.0005
ARG 3940.0007
THR 3950.0008
LEU 3960.0006
THR 3970.0010
ASN 3980.0012
GLU 3990.0007
THR 4000.0003
PHE 4010.0003
VAL 4020.0003
SER 4030.0005
LEU 4040.0009
ALA 4050.0010
HIS 4060.0009
SER 4070.0013
PRO 4080.0017
LEU 4090.0016
HIS 4100.0021
ILE 4110.0019
LEU 4120.0013
ASN 4130.0012
LEU 4140.0006
THR 4150.0007
LYS 4160.0007
ASN 4170.0006
LYS 4180.0006
ILE 4190.0004
SER 4200.0008
LYS 4210.0011
ILE 4220.0011
GLU 4230.0015
SER 4240.0019
ASP 4250.0019
ALA 4260.0012
PHE 4270.0014
SER 4280.0017
TRP 4290.0014
LEU 4300.0016
GLY 4310.0022
HIS 4320.0023
LEU 4330.0021
GLU 4340.0025
VAL 4350.0022
LEU 4360.0016
ASP 4370.0012
LEU 4380.0007
GLY 4390.0006
LEU 4400.0005
ASN 4410.0003
GLU 4420.0007
ILE 4430.0008
GLY 4440.0012
GLN 4450.0016
GLU 4460.0020
LEU 4470.0020
THR 4480.0026
GLY 4490.0026
GLN 4500.0027
GLU 4510.0020
TRP 4520.0022
ARG 4530.0027
GLY 4540.0028
LEU 4550.0026
GLU 4560.0034
ASN 4570.0034
ILE 4580.0029
PHE 4590.0032
GLU 4600.0026
ILE 4610.0019
TYR 4620.0014
LEU 4630.0008
SER 4640.0005
TYR 4650.0004
ASN 4660.0003
LYS 4670.0009
TYR 4680.0012
LEU 4690.0013
GLN 4700.0018
LEU 4710.0021
THR 4720.0029
ARG 4730.0033
ASN 4740.0034
SER 4750.0027
PHE 4760.0029
ALA 4770.0036
LEU 4780.0036
VAL 4790.0034
PRO 4800.0039
SER 4810.0042
LEU 4820.0035
GLN 4830.0036
ARG 4840.0029
LEU 4850.0022
MET 4860.0015
LEU 4870.0008
ARG 4880.0005
ARG 4890.0005
VAL 4900.0005
ALA 4910.0011
LEU 4920.0012
LYS 4930.0018
ASN 4940.0023
VAL 4950.0020
ASP 4960.0026
SER 4970.0032
SER 4980.0038
PRO 4990.0038
SER 5000.0031
PRO 5010.0029
PHE 5020.0028
GLN 5030.0035
PRO 5040.0040
LEU 5050.0036
ARG 5060.0042
ASN 5070.0042
LEU 5080.0035
THR 5090.0035
ILE 5100.0029
LEU 5110.0020
ASP 5120.0014
LEU 5130.0007
SER 5140.0007
ASN 5150.0010
ASN 5160.0008
ASN 5170.0015
ILE 5180.0014
ALA 5190.0020
ASN 5200.0022
ILE 5210.0019
ASN 5220.0025
ASP 5230.0025
ASP 5240.0030
MET 5250.0025
LEU 5260.0025
GLU 5270.0033
GLY 5280.0040
LEU 5290.0036
GLU 5300.0041
LYS 5310.0042
LEU 5320.0033
GLU 5330.0034
ILE 5340.0029
LEU 5350.0020
ASP 5360.0016
LEU 5370.0007
GLN 5380.0015
HIS 5390.0018
ASN 5400.0014
ASN 5410.0021
LEU 5420.0016
ALA 5430.0024
ARG 5440.0029
LEU 5450.0023
TRP 5460.0020
LYS 5470.0030
HIS 5480.0033
ALA 5490.0043
ASN 5500.0039
PRO 5510.0046
GLY 5520.0044
GLY 5530.0035
PRO 5540.0024
ILE 5550.0020
TYR 5560.0016
PHE 5570.0017
LEU 5580.0015
LYS 5590.0022
GLY 5600.0031
LEU 5610.0030
SER 5620.0037
HIS 5630.0041
LEU 5640.0033
HIS 5650.0037
ILE 5660.0032
LEU 5670.0022
ASN 5680.0021
LEU 5690.0016
GLU 5700.0025
SER 5710.0027
ASN 5720.0021
GLY 5730.0031
PHE 5740.0027
ASP 5750.0034
GLU 5760.0029
ILE 5770.0018
PRO 5780.0015
VAL 5790.0009
GLU 5800.0006
VAL 5810.0004
PHE 5820.0010
LYS 5830.0015
ASP 5840.0024
LEU 5850.0025
PHE 5860.0033
GLU 5870.0041
LEU 5880.0035
LYS 5890.0042
ILE 5900.0040
ILE 5910.0029
ASP 5920.0031
LEU 5930.0028
GLY 5940.0037
LEU 5950.0039
ASN 5960.0036
ASN 5970.0042
LEU 5980.0039
ASN 5990.0047
THR 6000.0042
LEU 6010.0031
PRO 6020.0026
ALA 6030.0023
SER 6040.0015
VAL 6050.0013
PHE 6060.0019
ASN 6070.0017
ASN 6080.0021
GLN 6090.0029
VAL 6100.0038
SER 6110.0044
LEU 6120.0041
LYS 6130.0052
SER 6140.0049
LEU 6150.0043
ASN 6160.0043
LEU 6170.0042
GLN 6180.0051
LYS 6190.0054
ASN 6200.0049
LEU 6210.0055
ILE 6220.0054
THR 6230.0064
SER 6240.0060
VAL 6250.0055
GLU 6260.0049
LYS 6270.0045
LYS 6280.0035
VAL 6290.0032
PHE 6300.0039
GLY 6310.0040
PRO 6320.0034
ALA 6330.0037
PHE 6340.0049
ARG 6350.0051
ASN 6360.0054
LEU 6370.0056
THR 6380.0065
GLU 6390.0063
LEU 6400.0059
ASP 6410.0058
MET 6420.0057
ARG 6430.0065
PHE 6440.0068
ASN 6450.0065
PRO 6460.0072
PHE 6470.0074
ASP 6480.0078
CYS 6490.0086
THR 6500.0087
CYS 6510.0083
GLU 6520.0074
SER 6530.0070
ILE 6540.0073
ALA 6550.0077
TRP 6560.0069
PHE 6570.0068
VAL 6580.0079
ASN 6590.0079
TRP 6600.0072
ILE 6610.0077
ASN 6620.0085
GLU 6630.0083
THR 6640.0078
HIS 6650.0079
THR 6660.0074
ASN 6670.0077
ILE 6680.0075
PRO 6690.0079
GLU 6700.0085
LEU 6710.0085
SER 6720.0095
SER 6730.0093
HIS 6740.0082
TYR 6750.0081
LEU 6760.0086
CYS 6770.0088
ASN 6780.0088
THR 6790.0088
PRO 6800.0098
PRO 6810.0107
HIS 6820.0113
TYR 6830.0104
HIS 6840.0102
GLY 6850.0101
PHE 6860.0102
PRO 6870.0096
VAL 6880.0088
ARG 6890.0092
LEU 6900.0102
PHE 6910.0098
ASP 6920.0102
THR 6930.0094
SER 6940.0102
SER 6950.0103
CYS 6960.0092
GLU 10.0029
ALA 20.0029
ALA 30.0026
ALA 40.0024
LYS 50.0025
MET 60.0024
GLN 70.0021
ARG 80.0021
LEU 90.0022
VAL 100.0020
LEU 110.0018
LEU 120.0019
LEU 130.0019
ALA 140.0016
ILE 150.0016
SER 160.0017
LEU 170.0016
LEU 180.0016
LEU 190.0016
TYR 200.0016
GLN 210.0016
ASP 220.0017
LEU 230.0016
PRO 240.0017
VAL 250.0016
ARG 260.0021
SER 270.0027
GLU 280.0027
PHE 290.0028
GLU 300.0035
LEU 310.0041
ASP 320.0041
ARG 330.0042
ILE 340.0050
CYS 350.0056
GLY 360.0065
TYR 370.0066
GLY 380.0060
THR 390.0063
ALA 400.0058
ARG 410.0051
CYS 420.0048
ARG 430.0047
LYS 440.0047
LYS 450.0052
CYS 460.0056
ARG 470.0051
SER 480.0055
GLN 490.0056
GLU 500.0059
TYR 510.0067
ARG 520.0066
ILE 530.0069
GLY 540.0066
ARG 550.0059
CYS 560.0052
PRO 570.0047
ASN 580.0042
THR 590.0049
TYR 600.0049
ALA 610.0057
CYS 620.0058
CYS 630.0057
LEU 640.0062
ARG 650.0061
LYS 660.0070
TRP 670.0072
ASP 680.0053
GLU 690.0050
SER 700.0042
LEU 710.0064
LEU 720.0067
ASN 730.0051
ARG 740.0064
THR 750.0080
LYS 760.0058
PRO 770.0055
GLU 780.0050
ALA 790.0044
ALA 800.0053
ALA 810.0051
LYS 820.0055
LYS 830.0041
GLU 840.0041
MET 850.0037
ASN 860.0025
LEU 870.0027
SER 880.0015
VAL 890.0024
GLY 900.0029
LEU 910.0034
GLY 920.0049
GLY 930.0051
GLY 940.0043
SER 950.0027
ASN 960.0014
LEU 970.0004
SER 980.0014
VAL 990.0030
GLY 1000.0041
LEU 1010.0056
GLY 1020.0075
GLU 1030.0088
ILE 1040.0114
GLY 1050.0131
GLY 1060.0159
GLY 1070.0145
SER 1080.0131
LYS 1090.0101
LEU 1100.0093
LEU 1110.0064
ASP 1120.0056
ILE 1130.0040
ASN 1140.0034
LEU 1150.0032
GLY 1160.0027
ARG 1170.0041
GLY 1180.0048
GLY 1190.0062
GLY 1200.0068
SER 1210.0055
MET 1220.0059
VAL 1230.0049
ASP 1240.0048
LEU 1250.0047
THR 1260.0042
PHE 1270.0045
GLY 1280.0035
GLY 1290.0040
VAL 1300.0046
GLY 1310.0045
GLY 1320.0057
GLY 1330.0060
SER 1340.0071
THR 1350.0076
PHE 1360.0082
THR 1370.0096
PHE 1380.0092
PHE 1390.0106
PRO 1400.0105
LEU 1410.0113
VAL 1420.0126
ILE 1430.0117
GLY 1440.0131
GLY 1450.0125
GLY 1460.0097
SER 1470.0081
ASP 1480.0067
ALA 1490.0070
MET 1500.0074
TYR 1510.0081
LEU 1520.0080
GLY 1530.0090
PHE 1540.0090
ALA 1550.0101
ALA 1560.0093
GLY 1570.0088
GLY 1580.0078
GLY 1590.0068
SER 1600.0055
ALA 1610.0064
GLY 1620.0052
GLY 1630.0049
GLU 1640.0049
ASN 1650.0059
HIS 1660.0059
VAL 1670.0069
ALA 1680.0071
PHE 1690.0076
GLY 1700.0086
PRO 1710.0095
GLY 1720.0107
PRO 1730.0113
GLY 1740.0110
VAL 1750.0099
ASP 1760.0092
LEU 1770.0089
THR 1780.0081
PHE 1790.0081
GLY 1800.0075
GLY 1810.0079
VAL 1820.0093
GLN 1830.0096
PHE 1840.0106
ALA 1850.0112
MET 1860.0121
VAL 1870.0124
ASN 1880.0116
ASN 1890.0122
GLY 1900.0119
PRO 1910.0243
GLY 1920.0426
PRO 1930.0614
GLY 1940.0809
GLU 1950.0676
SER 1960.0722
PHE 1970.0617
THR 1980.0602
ALA 1990.0506
GLN 2000.0441
PRO 2010.0384
ALA 2020.0313
ASP 2030.0288
MET 2040.0237
GLN 2050.0155
ALA 2060.0121
GLY 2070.0096
ILE 2080.0067
LYS 2090.0040
GLY 2100.0027
PRO 2110.0036
GLY 2120.0040
PRO 2130.0054
GLY 2140.0068
GLY 2150.0060
SER 2160.0079
ILE 2170.0095
GLN 2180.0139
VAL 2190.0157
ILE 2200.0201
ASN 2210.0205
GLY 2220.0208
SER 2230.0233
THR 2240.0235
ILE 2250.0240
GLY 2260.0267
THR 2270.0234
GLY 2280.0193
SER 2290.0139
LYS 2300.0147
LYS 2310.0158
THR 2320.0178
ILE 2330.0179
LEU 2340.0220
ILE 2350.0203
TYR 2360.0254
SER 2370.0242
ILE 2380.0246
ILE 2390.0270
GLY 2400.0263
VAL 2410.0224
LYS 2420.0209
LYS 2430.0160
GLY 2440.0219
THR 2450.0281
LEU 2460.0315
ALA 2470.0329
TRP 2480.0328
ALA 2490.0329
ARG 2500.0327
THR 2510.0307
GLY 2520.0305
PHE 2530.0249
SER 2540.0252
PRO 2550.0194
ALA 2560.0181
LYS 2570.0150
LYS 2580.0100
LEU 2590.0108
ASN 2600.0093
ALA 2610.0090
GLY 2620.0087
VAL 2630.0109
VAL 2640.0103
ARG 2650.0146
VAL 2660.0136
PHE 2670.0201
PHE 2680.0254
LEU 2690.0310
ASN 2700.0371
GLN 2710.0367
LYS 2720.0466
LYS 2730.0468
ALA 2740.0379
LYS 2750.0423
ASP 2760.0527
VAL 2770.0492
LEU 2780.0436
ARG 2790.0541
LYS 2800.0619
THR 2810.0617
SER 2820.0601
ARG 2830.0522
PRO 2840.0498
MET 2850.0404
VAL 2860.0336
ASP 2870.0325
LEU 2880.0307
THR 2890.0343
PHE 2900.0345
GLY 2910.0392
GLY 2920.0514

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.