CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 14  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0993
THR 260.0206
LYS 270.0183
CYS 280.0159
THR 290.0153
VAL 300.0131
SER 310.0128
HIS 320.0107
GLU 330.0093
VAL 340.0104
ALA 350.0121
ASP 360.0138
CYS 370.0153
SER 380.0161
HIS 390.0185
LEU 400.0193
LYS 410.0201
LEU 420.0191
THR 430.0197
GLN 440.0184
VAL 450.0161
PRO 460.0161
ASP 470.0153
ASP 480.0153
LEU 490.0135
PRO 500.0115
THR 510.0096
ASN 520.0081
ILE 530.0090
THR 540.0074
VAL 550.0087
LEU 560.0107
ASN 570.0122
LEU 580.0140
THR 590.0146
HIS 600.0168
ASN 610.0177
GLN 620.0190
LEU 630.0176
ARG 640.0184
ARG 650.0171
LEU 660.0152
PRO 670.0157
ALA 680.0142
ALA 690.0149
ASN 700.0146
PHE 710.0123
THR 720.0118
ARG 730.0112
TYR 740.0100
SER 750.0082
GLN 760.0066
LEU 770.0074
THR 780.0061
SER 790.0076
LEU 800.0096
ASP 810.0108
VAL 820.0127
GLY 830.0130
PHE 840.0151
ASN 850.0163
THR 860.0174
ILE 870.0162
SER 880.0167
LYS 890.0161
LEU 900.0142
GLU 910.0144
PRO 920.0132
GLU 930.0132
LEU 940.0120
CYS 950.0103
GLN 960.0105
LYS 970.0104
LEU 980.0087
PRO 990.0071
MET 1000.0055
LEU 1010.0068
LYS 1020.0055
VAL 1030.0068
LEU 1040.0085
ASN 1050.0097
LEU 1060.0114
GLN 1070.0116
HIS 1080.0135
ASN 1090.0147
GLU 1100.0157
LEU 1110.0141
SER 1120.0144
GLN 1130.0145
LEU 1140.0131
SER 1150.0136
ASP 1160.0128
LYS 1170.0133
THR 1180.0125
PHE 1190.0105
ALA 1200.0109
PHE 1210.0102
CYS 1220.0085
THR 1230.0072
ASN 1240.0055
LEU 1250.0059
THR 1260.0045
GLU 1270.0057
LEU 1280.0074
HIS 1290.0085
LEU 1300.0099
MET 1310.0102
SER 1320.0119
ASN 1330.0128
SER 1340.0133
ILE 1350.0125
GLN 1360.0126
LYS 1370.0123
ILE 1380.0115
LYS 1390.0126
ASN 1400.0124
ASN 1410.0110
PRO 1420.0106
PHE 1430.0088
VAL 1440.0090
LYS 1450.0087
GLN 1460.0070
LYS 1470.0060
ASN 1480.0045
LEU 1490.0048
ILE 1500.0035
THR 1510.0046
LEU 1520.0060
ASP 1530.0070
LEU 1540.0081
SER 1550.0083
HIS 1560.0098
ASN 1570.0105
GLY 1580.0110
LEU 1590.0100
SER 1600.0097
SER 1610.0088
THR 1620.0075
LYS 1630.0086
LEU 1640.0087
GLY 1650.0096
THR 1660.0105
GLN 1670.0098
VAL 1680.0082
GLN 1690.0074
LEU 1700.0060
GLU 1710.0051
ASN 1720.0037
LEU 1730.0038
GLN 1740.0024
GLU 1750.0035
LEU 1760.0046
LEU 1770.0056
LEU 1780.0064
SER 1790.0066
ASN 1800.0080
ASN 1810.0085
LYS 1820.0088
ILE 1830.0076
GLN 1840.0074
ALA 1850.0067
LEU 1860.0061
LYS 1870.0069
SER 1880.0070
GLU 1890.0083
GLU 1900.0078
LEU 1910.0065
ASP 1920.0072
ILE 1930.0073
PHE 1940.0058
ALA 1950.0062
ASN 1960.0056
SER 1970.0042
SER 1980.0027
LEU 1990.0023
LYS 2000.0012
LYS 2010.0024
LEU 2020.0032
GLU 2030.0041
LEU 2040.0045
SER 2050.0050
SER 2060.0060
ASN 2070.0061
GLN 2080.0059
ILE 2090.0053
LYS 2100.0053
GLU 2110.0052
PHE 2120.0047
SER 2130.0058
PRO 2140.0057
GLY 2150.0056
CYS 2160.0052
PHE 2170.0041
HIS 2180.0048
ALA 2190.0056
ILE 2200.0047
GLY 2210.0044
ARG 2220.0030
LEU 2230.0020
PHE 2240.0006
GLY 2250.0012
LEU 2260.0018
PHE 2270.0027
LEU 2280.0030
ASN 2290.0037
ASN 2300.0045
VAL 2310.0038
GLN 2320.0034
LEU 2330.0025
GLY 2340.0016
PRO 2350.0006
SER 2360.0015
LEU 2370.0021
THR 2380.0012
GLU 2390.0014
LYS 2400.0024
LEU 2410.0021
CYS 2420.0015
LEU 2430.0027
GLU 2440.0031
LEU 2450.0022
ALA 2460.0027
ASN 2470.0033
THR 2480.0025
SER 2490.0019
ILE 2500.0008
ARG 2510.0008
ASN 2520.0010
LEU 2530.0010
SER 2540.0020
LEU 2550.0021
SER 2560.0029
ASN 2570.0032
SER 2580.0024
GLN 2590.0023
LEU 2600.0015
SER 2610.0016
THR 2620.0014
THR 2630.0013
SER 2640.0015
ASN 2650.0019
THR 2660.0017
THR 2670.0008
PHE 2680.0011
LEU 2690.0020
GLY 2700.0020
LEU 2710.0016
LYS 2720.0026
TRP 2730.0028
THR 2740.0019
ASN 2750.0018
LEU 2760.0013
THR 2770.0019
MET 2780.0019
LEU 2790.0018
ASP 2800.0023
LEU 2810.0022
SER 2820.0029
TYR 2830.0031
ASN 2840.0024
ASN 2850.0026
LEU 2860.0022
ASN 2870.0024
VAL 2880.0023
VAL 2890.0023
GLY 2900.0023
ASN 2910.0027
ASP 2920.0027
SER 2930.0021
PHE 2940.0022
ALA 2950.0026
TRP 2960.0023
LEU 2970.0021
PRO 2980.0029
GLN 2990.0025
LEU 3000.0023
GLU 3010.0030
TYR 3020.0029
PHE 3030.0029
PHE 3040.0030
LEU 3050.0031
GLU 3060.0035
TYR 3070.0034
ASN 3080.0030
ASN 3090.0029
ILE 3100.0030
GLN 3110.0033
HIS 3120.0035
LEU 3130.0034
PHE 3140.0034
SER 3150.0036
HIS 3160.0033
SER 3170.0029
LEU 3180.0031
HIS 3190.0031
GLY 3200.0030
LEU 3210.0031
PHE 3220.0035
ASN 3230.0033
VAL 3240.0033
ARG 3250.0037
TYR 3260.0038
LEU 3270.0037
ASN 3280.0038
LEU 3290.0039
LYS 3300.0041
ARG 3310.0040
SER 3320.0035
PHE 3330.0037
THR 3340.0035
LYS 3350.0039
GLN 3360.0040
SER 3370.0038
ILE 3380.0043
SER 3390.0041
LEU 3400.0038
ALA 3410.0041
SER 3420.0039
LEU 3430.0041
PRO 3440.0040
LYS 3450.0041
ILE 3460.0039
ASP 3470.0039
ASP 3480.0040
PHE 3490.0039
SER 3500.0038
PHE 3510.0039
GLN 3520.0040
TRP 3530.0036
LEU 3540.0036
LYS 3550.0039
CYS 3560.0040
LEU 3570.0041
GLU 3580.0042
HIS 3590.0042
LEU 3600.0042
ASN 3610.0043
MET 3620.0044
GLU 3630.0044
ASP 3640.0045
ASN 3650.0045
ASP 3660.0044
ILE 3670.0044
PRO 3680.0044
GLY 3690.0043
ILE 3700.0043
LYS 3710.0042
SER 3720.0042
ASN 3730.0042
MET 3740.0042
PHE 3750.0041
THR 3760.0041
GLY 3770.0041
LEU 3780.0041
ILE 3790.0042
ASN 3800.0042
LEU 3810.0044
LYS 3820.0044
TYR 3830.0044
LEU 3840.0044
SER 3850.0044
LEU 3860.0045
SER 3870.0046
ASN 3880.0046
SER 3890.0047
PHE 3900.0045
THR 3910.0046
SER 3920.0039
LEU 3930.0035
ARG 3940.0030
THR 3950.0025
LEU 3960.0026
THR 3970.0023
ASN 3980.0023
GLU 3990.0028
THR 4000.0031
PHE 4010.0034
VAL 4020.0035
SER 4030.0038
LEU 4040.0038
ALA 4050.0037
HIS 4060.0040
SER 4070.0041
PRO 4080.0042
LEU 4090.0041
HIS 4100.0041
ILE 4110.0041
LEU 4120.0040
ASN 4130.0042
LEU 4140.0040
THR 4150.0043
LYS 4160.0046
ASN 4170.0043
LYS 4180.0040
ILE 4190.0031
SER 4200.0027
LYS 4210.0021
ILE 4220.0018
GLU 4230.0014
SER 4240.0012
ASP 4250.0016
ALA 4260.0022
PHE 4270.0024
SER 4280.0024
TRP 4290.0030
LEU 4300.0030
GLY 4310.0032
HIS 4320.0036
LEU 4330.0034
GLU 4340.0034
VAL 4350.0034
LEU 4360.0033
ASP 4370.0039
LEU 4380.0035
GLY 4390.0043
LEU 4400.0051
ASN 4410.0046
GLU 4420.0043
ILE 4430.0034
GLY 4440.0034
GLN 4450.0028
GLU 4460.0033
LEU 4470.0026
THR 4480.0026
GLY 4490.0020
GLN 4500.0019
GLU 4510.0013
TRP 4520.0014
ARG 4530.0018
GLY 4540.0024
LEU 4550.0021
GLU 4560.0027
ASN 4570.0030
ILE 4580.0025
PHE 4590.0026
GLU 4600.0029
ILE 4610.0027
TYR 4620.0039
LEU 4630.0038
SER 4640.0052
TYR 4650.0062
ASN 4660.0052
LYS 4670.0055
TYR 4680.0051
LEU 4690.0044
GLN 4700.0045
LEU 4710.0046
THR 4720.0048
ARG 4730.0050
ASN 4740.0039
SER 4750.0030
PHE 4760.0022
ALA 4770.0027
LEU 4780.0022
VAL 4790.0015
PRO 4800.0018
SER 4810.0019
LEU 4820.0015
GLN 4830.0020
ARG 4840.0028
LEU 4850.0030
MET 4860.0045
LEU 4870.0049
ARG 4880.0065
ARG 4890.0074
VAL 4900.0062
ALA 4910.0073
LEU 4920.0064
LYS 4930.0068
ASN 4940.0068
VAL 4950.0065
ASP 4960.0080
SER 4970.0075
SER 4980.0082
PRO 4990.0071
SER 5000.0060
PRO 5010.0046
PHE 5020.0038
GLN 5030.0042
PRO 5040.0034
LEU 5050.0022
ARG 5060.0022
ASN 5070.0013
LEU 5080.0015
THR 5090.0023
ILE 5100.0035
LEU 5110.0042
ASP 5120.0057
LEU 5130.0065
SER 5140.0081
ASN 5150.0094
ASN 5160.0091
ASN 5170.0107
ILE 5180.0099
ALA 5190.0113
ASN 5200.0106
ILE 5210.0091
ASN 5220.0091
ASP 5230.0091
ASP 5240.0078
MET 5250.0067
LEU 5260.0053
GLU 5270.0056
GLY 5280.0045
LEU 5290.0031
GLU 5300.0025
LYS 5310.0012
LEU 5320.0024
GLU 5330.0031
ILE 5340.0046
LEU 5350.0055
ASP 5360.0072
LEU 5370.0084
GLN 5380.0102
HIS 5390.0117
ASN 5400.0114
ASN 5410.0130
LEU 5420.0121
ALA 5430.0139
ARG 5440.0148
LEU 5450.0131
TRP 5460.0132
LYS 5470.0154
HIS 5480.0161
ALA 5490.0178
ASN 5500.0164
PRO 5510.0171
GLY 5520.0161
GLY 5530.0152
PRO 5540.0134
ILE 5550.0113
TYR 5560.0097
PHE 5570.0082
LEU 5580.0069
LYS 5590.0068
GLY 5600.0053
LEU 5610.0038
SER 5620.0025
HIS 5630.0013
LEU 5640.0031
HIS 5650.0040
ILE 5660.0058
LEU 5670.0069
ASN 5680.0088
LEU 5690.0102
GLU 5700.0121
SER 5710.0139
ASN 5720.0133
GLY 5730.0153
PHE 5740.0145
ASP 5750.0162
GLU 5760.0150
ILE 5770.0128
PRO 5780.0126
VAL 5790.0114
GLU 5800.0100
VAL 5810.0091
PHE 5820.0073
LYS 5830.0069
ASP 5840.0052
LEU 5850.0042
PHE 5860.0024
GLU 5870.0019
LEU 5880.0039
LYS 5890.0052
ILE 5900.0070
ILE 5910.0082
ASP 5920.0103
LEU 5930.0118
GLY 5940.0139
LEU 5950.0158
ASN 5960.0159
ASN 5970.0176
LEU 5980.0162
ASN 5990.0174
THR 6000.0168
LEU 6010.0139
PRO 6020.0134
ALA 6030.0119
SER 6040.0096
VAL 6050.0097
PHE 6060.0074
ASN 6070.0062
ASN 6080.0046
GLN 6090.0041
VAL 6100.0022
SER 6110.0029
LEU 6120.0051
LYS 6130.0071
SER 6140.0089
LEU 6150.0097
ASN 6160.0120
LEU 6170.0136
GLN 6180.0160
LYS 6190.0184
ASN 6200.0178
LEU 6210.0194
ILE 6220.0176
THR 6230.0192
SER 6240.0172
VAL 6250.0143
GLU 6260.0128
LYS 6270.0100
LYS 6280.0105
VAL 6290.0104
PHE 6300.0093
GLY 6310.0071
PRO 6320.0050
ALA 6330.0063
PHE 6340.0073
ARG 6350.0051
ASN 6360.0055
LEU 6370.0079
THR 6380.0099
GLU 6390.0115
LEU 6400.0120
ASP 6410.0142
MET 6420.0152
ARG 6430.0181
PHE 6440.0205
ASN 6450.0197
PRO 6460.0218
PHE 6470.0203
ASP 6480.0212
CYS 6490.0211
THR 6500.0207
CYS 6510.0181
GLU 6520.0177
SER 6530.0175
ILE 6540.0162
ALA 6550.0148
TRP 6560.0115
PHE 6570.0126
VAL 6580.0141
ASN 6590.0113
TRP 6600.0099
ILE 6610.0125
ASN 6620.0130
GLU 6630.0094
THR 6640.0097
HIS 6650.0127
THR 6660.0112
ASN 6670.0140
ILE 6680.0151
PRO 6690.0180
GLU 6700.0204
LEU 6710.0191
SER 6720.0217
SER 6730.0236
HIS 6740.0219
TYR 6750.0203
LEU 6760.0228
CYS 6770.0232
ASN 6780.0252
THR 6790.0253
PRO 6800.0265
PRO 6810.0295
HIS 6820.0289
TYR 6830.0263
HIS 6840.0278
GLY 6850.0275
PHE 6860.0255
PRO 6870.0228
VAL 6880.0198
ARG 6890.0186
LEU 6900.0208
PHE 6910.0198
ASP 6920.0190
THR 6930.0161
SER 6940.0161
SER 6950.0183
CYS 6960.0166
GLU 10.0019
ALA 20.0013
ALA 30.0017
ALA 40.0021
LYS 50.0015
MET 60.0017
GLN 70.0023
ARG 80.0023
LEU 90.0022
VAL 100.0027
LEU 110.0029
LEU 120.0027
LEU 130.0031
ALA 140.0037
ILE 150.0038
SER 160.0036
LEU 170.0050
LEU 180.0057
LEU 190.0060
TYR 200.0071
GLN 210.0082
ASP 220.0091
LEU 230.0100
PRO 240.0124
VAL 250.0122
ARG 260.0172
SER 270.0191
GLU 280.0190
PHE 290.0226
GLU 300.0228
LEU 310.0203
ASP 320.0192
ARG 330.0211
ILE 340.0201
CYS 350.0176
GLY 360.0168
TYR 370.0182
GLY 380.0203
THR 390.0201
ALA 400.0190
ARG 410.0200
CYS 420.0190
ARG 430.0196
LYS 440.0192
LYS 450.0185
CYS 460.0176
ARG 470.0189
SER 480.0177
GLN 490.0186
GLU 500.0177
TYR 510.0155
ARG 520.0144
ILE 530.0137
GLY 540.0130
ARG 550.0137
CYS 560.0154
PRO 570.0152
ASN 580.0168
THR 590.0153
TYR 600.0167
ALA 610.0160
CYS 620.0164
CYS 630.0173
LEU 640.0178
ARG 650.0191
LYS 660.0187
TRP 670.0191
ASP 680.0191
GLU 690.0189
SER 700.0198
LEU 710.0183
LEU 720.0190
ASN 730.0182
ARG 740.0164
THR 750.0165
LYS 760.0158
PRO 770.0131
GLU 780.0111
ALA 790.0112
ALA 800.0120
ALA 810.0121
LYS 820.0108
LYS 830.0091
GLU 840.0087
MET 850.0068
ASN 860.0070
LEU 870.0056
SER 880.0064
VAL 890.0056
GLY 900.0069
LEU 910.0066
GLY 920.0080
GLY 930.0093
GLY 940.0097
SER 950.0085
ASN 960.0080
LEU 970.0067
SER 980.0072
VAL 990.0063
GLY 1000.0073
LEU 1010.0066
GLY 1020.0080
GLU 1030.0087
ILE 1040.0089
GLY 1050.0099
GLY 1060.0092
GLY 1070.0080
SER 1080.0065
LYS 1090.0054
LEU 1100.0042
LEU 1110.0029
ASP 1120.0025
ILE 1130.0020
ASN 1140.0017
LEU 1150.0018
GLY 1160.0025
ARG 1170.0022
GLY 1180.0042
GLY 1190.0053
GLY 1200.0067
SER 1210.0059
MET 1220.0059
VAL 1230.0048
ASP 1240.0051
LEU 1250.0040
THR 1260.0048
PHE 1270.0040
GLY 1280.0050
GLY 1290.0044
VAL 1300.0042
GLY 1310.0035
GLY 1320.0028
GLY 1330.0018
SER 1340.0017
THR 1350.0010
PHE 1360.0008
THR 1370.0009
PHE 1380.0015
PHE 1390.0023
PRO 1400.0030
LEU 1410.0027
VAL 1420.0032
ILE 1430.0030
GLY 1440.0034
GLY 1450.0033
GLY 1460.0044
SER 1470.0032
ASP 1480.0022
ALA 1490.0017
MET 1500.0014
TYR 1510.0018
LEU 1520.0006
GLY 1530.0015
PHE 1540.0008
ALA 1550.0014
ALA 1560.0012
GLY 1570.0009
GLY 1580.0004
GLY 1590.0004
SER 1600.0005
ALA 1610.0014
GLY 1620.0027
GLY 1630.0037
GLU 1640.0042
ASN 1650.0039
HIS 1660.0046
VAL 1670.0042
ALA 1680.0053
PHE 1690.0051
GLY 1700.0064
PRO 1710.0068
GLY 1720.0072
PRO 1730.0068
GLY 1740.0063
VAL 1750.0054
ASP 1760.0056
LEU 1770.0047
THR 1780.0050
PHE 1790.0041
GLY 1800.0046
GLY 1810.0057
VAL 1820.0056
GLN 1830.0060
PHE 1840.0057
ALA 1850.0065
MET 1860.0062
VAL 1870.0065
ASN 1880.0065
ASN 1890.0066
GLY 1900.0065
PRO 1910.0058
GLY 1920.0045
PRO 1930.0060
GLY 1940.0088
GLU 1950.0092
SER 1960.0102
PHE 1970.0095
THR 1980.0065
ALA 1990.0065
GLN 2000.0043
PRO 2010.0050
ALA 2020.0034
ASP 2030.0059
MET 2040.0079
GLN 2050.0069
ALA 2060.0089
GLY 2070.0089
ILE 2080.0070
LYS 2090.0068
GLY 2100.0058
PRO 2110.0041
GLY 2120.0037
PRO 2130.0022
GLY 2140.0019
GLY 2150.0018
SER 2160.0033
ILE 2170.0032
GLN 2180.0019
VAL 2190.0021
ILE 2200.0013
ASN 2210.0014
GLY 2220.0015
SER 2230.0050
THR 2240.0071
ILE 2250.0099
GLY 2260.0129
THR 2270.0145
GLY 2280.0148
SER 2290.0150
LYS 2300.0129
LYS 2310.0103
THR 2320.0088
ILE 2330.0084
LEU 2340.0070
ILE 2350.0063
TYR 2360.0057
SER 2370.0068
ILE 2380.0074
ILE 2390.0081
GLY 2400.0094
VAL 2410.0076
LYS 2420.0059
LYS 2430.0046
GLY 2440.0043
THR 2450.0054
LEU 2460.0067
ALA 2470.0063
TRP 2480.0059
ALA 2490.0061
ARG 2500.0063
THR 2510.0054
GLY 2520.0058
PHE 2530.0063
SER 2540.0067
PRO 2550.0078
ALA 2560.0084
LYS 2570.0099
LYS 2580.0137
LEU 2590.0152
ASN 2600.0190
ALA 2610.0241
GLY 2620.0191
VAL 2630.0165
VAL 2640.0131
ARG 2650.0090
VAL 2660.0069
PHE 2670.0058
PHE 2680.0062
LEU 2690.0049
ASN 2700.0051
GLN 2710.0084
LYS 2720.0066
LYS 2730.0077
ALA 2740.0104
LYS 2750.0162
ASP 2760.0207
VAL 2770.0199
LEU 2780.0221
ARG 2790.0320
LYS 2800.0342
THR 2810.0360
SER 2820.0353
ARG 2830.0299
PRO 2840.0297
MET 2850.0204
VAL 2860.0295
ASP 2870.0368
LEU 2880.0376
THR 2890.0509
PHE 2900.0670
GLY 2910.0883
GLY 2920.0993

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.