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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 16  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1935
THR 260.0142
LYS 270.0135
CYS 280.0124
THR 290.0126
VAL 300.0123
SER 310.0122
HIS 320.0119
GLU 330.0112
VAL 340.0106
ALA 350.0108
ASP 360.0109
CYS 370.0111
SER 380.0107
HIS 390.0116
LEU 400.0125
LYS 410.0125
LEU 420.0122
THR 430.0120
GLN 440.0116
VAL 450.0108
PRO 460.0119
ASP 470.0120
ASP 480.0132
LEU 490.0124
PRO 500.0123
THR 510.0111
ASN 520.0111
ILE 530.0104
THR 540.0092
VAL 550.0088
LEU 560.0089
ASN 570.0091
LEU 580.0093
THR 590.0090
HIS 600.0099
ASN 610.0106
GLN 620.0111
LEU 630.0101
ARG 640.0100
ARG 650.0090
LEU 660.0082
PRO 670.0085
ALA 680.0074
ALA 690.0087
ASN 700.0095
PHE 710.0083
THR 720.0083
ARG 730.0096
TYR 740.0089
SER 750.0078
GLN 760.0084
LEU 770.0076
THR 780.0068
SER 790.0066
LEU 800.0067
ASP 810.0069
VAL 820.0073
GLY 830.0070
PHE 840.0081
ASN 850.0089
THR 860.0093
ILE 870.0083
SER 880.0082
LYS 890.0074
LEU 900.0061
GLU 910.0061
PRO 920.0046
GLU 930.0050
LEU 940.0054
CYS 950.0039
GLN 960.0039
LYS 970.0055
LEU 980.0055
PRO 990.0047
MET 1000.0056
LEU 1010.0049
LYS 1020.0046
VAL 1030.0047
LEU 1040.0043
ASN 1050.0049
LEU 1060.0052
GLN 1070.0054
HIS 1080.0066
ASN 1090.0073
GLU 1100.0079
LEU 1110.0066
SER 1120.0070
GLN 1130.0069
LEU 1140.0054
SER 1150.0054
ASP 1160.0046
LYS 1170.0043
THR 1180.0041
PHE 1190.0026
ALA 1200.0023
PHE 1210.0018
CYS 1220.0020
THR 1230.0021
ASN 1240.0033
LEU 1250.0029
THR 1260.0035
GLU 1270.0031
LEU 1280.0024
HIS 1290.0031
LEU 1300.0036
MET 1310.0041
SER 1320.0055
ASN 1330.0059
SER 1340.0067
ILE 1350.0060
GLN 1360.0070
LYS 1370.0069
ILE 1380.0059
LYS 1390.0068
ASN 1400.0065
ASN 1410.0051
PRO 1420.0039
PHE 1430.0029
VAL 1440.0036
LYS 1450.0026
GLN 1460.0021
LYS 1470.0036
ASN 1480.0037
LEU 1490.0027
ILE 1500.0034
THR 1510.0024
LEU 1520.0014
ASP 1530.0017
LEU 1540.0026
SER 1550.0029
HIS 1560.0043
ASN 1570.0051
GLY 1580.0062
LEU 1590.0057
SER 1600.0066
SER 1610.0062
THR 1620.0052
LYS 1630.0059
LEU 1640.0049
GLY 1650.0057
THR 1660.0072
GLN 1670.0069
VAL 1680.0066
GLN 1690.0050
LEU 1700.0039
GLU 1710.0052
ASN 1720.0047
LEU 1730.0036
GLN 1740.0039
GLU 1750.0026
LEU 1760.0021
LEU 1770.0015
LEU 1780.0026
SER 1790.0025
ASN 1800.0038
ASN 1810.0046
LYS 1820.0059
ILE 1830.0056
GLN 1840.0067
ALA 1850.0069
LEU 1860.0065
LYS 1870.0076
SER 1880.0079
GLU 1890.0082
GLU 1900.0069
LEU 1910.0062
ASP 1920.0073
ILE 1930.0062
PHE 1940.0057
ALA 1950.0072
ASN 1960.0070
SER 1970.0058
SER 1980.0058
LEU 1990.0045
LYS 2000.0043
LYS 2010.0031
LEU 2020.0029
GLU 2030.0020
LEU 2040.0029
SER 2050.0024
SER 2060.0034
ASN 2070.0043
GLN 2080.0053
ILE 2090.0055
LYS 2100.0067
GLU 2110.0071
PHE 2120.0068
SER 2130.0081
PRO 2140.0087
GLY 2150.0084
CYS 2160.0072
PHE 2170.0065
HIS 2180.0077
ALA 2190.0075
ILE 2200.0064
GLY 2210.0071
ARG 2220.0066
LEU 2230.0055
PHE 2240.0051
GLY 2250.0039
LEU 2260.0034
PHE 2270.0024
LEU 2280.0027
ASN 2290.0019
ASN 2300.0027
VAL 2310.0036
GLN 2320.0042
LEU 2330.0044
GLY 2340.0044
PRO 2350.0046
SER 2360.0058
LEU 2370.0056
THR 2380.0048
GLU 2390.0057
LYS 2400.0064
LEU 2410.0056
CYS 2420.0057
LEU 2430.0070
GLU 2440.0069
LEU 2450.0062
ALA 2460.0073
ASN 2470.0079
THR 2480.0070
SER 2490.0066
ILE 2500.0055
ARG 2510.0050
ASN 2520.0039
LEU 2530.0034
SER 2540.0023
LEU 2550.0024
SER 2560.0016
ASN 2570.0021
SER 2580.0029
GLN 2590.0031
LEU 2600.0030
SER 2610.0029
THR 2620.0030
THR 2630.0031
SER 2640.0038
ASN 2650.0044
THR 2660.0055
THR 2670.0048
PHE 2680.0048
LEU 2690.0059
GLY 2700.0063
LEU 2710.0058
LYS 2720.0066
TRP 2730.0072
THR 2740.0064
ASN 2750.0063
LEU 2760.0051
THR 2770.0047
MET 2780.0037
LEU 2790.0031
ASP 2800.0021
LEU 2810.0018
SER 2820.0010
TYR 2830.0013
ASN 2840.0019
ASN 2850.0019
LEU 2860.0017
ASN 2870.0017
VAL 2880.0019
VAL 2890.0020
GLY 2900.0026
ASN 2910.0028
ASP 2920.0035
SER 2930.0034
PHE 2940.0036
ALA 2950.0043
TRP 2960.0052
LEU 2970.0048
PRO 2980.0054
GLN 2990.0054
LEU 3000.0044
GLU 3010.0042
TYR 3020.0034
PHE 3030.0027
PHE 3040.0019
LEU 3050.0013
GLU 3060.0008
TYR 3070.0008
ASN 3080.0009
ASN 3090.0012
ILE 3100.0008
GLN 3110.0010
HIS 3120.0007
LEU 3130.0008
PHE 3140.0012
SER 3150.0017
HIS 3160.0023
SER 3170.0021
LEU 3180.0025
HIS 3190.0032
GLY 3200.0040
LEU 3210.0037
PHE 3220.0043
ASN 3230.0046
VAL 3240.0039
ARG 3250.0041
TYR 3260.0033
LEU 3270.0026
ASN 3280.0020
LEU 3290.0015
LYS 3300.0014
ARG 3310.0013
SER 3320.0008
PHE 3330.0009
THR 3340.0013
LYS 3350.0021
GLN 3360.0025
SER 3370.0029
ILE 3380.0035
SER 3390.0037
LEU 3400.0030
ALA 3410.0027
SER 3420.0021
LEU 3430.0019
PRO 3440.0013
LYS 3450.0012
ILE 3460.0013
ASP 3470.0014
ASP 3480.0020
PHE 3490.0024
SER 3500.0020
PHE 3510.0025
GLN 3520.0031
TRP 3530.0032
LEU 3540.0034
LYS 3550.0042
CYS 3560.0043
LEU 3570.0037
GLU 3580.0041
HIS 3590.0035
LEU 3600.0028
ASN 3610.0024
MET 3620.0022
GLU 3630.0021
ASP 3640.0020
ASN 3650.0020
ASP 3660.0023
ILE 3670.0024
PRO 3680.0029
GLY 3690.0032
ILE 3700.0033
LYS 3710.0032
SER 3720.0037
ASN 3730.0032
MET 3740.0028
PHE 3750.0032
THR 3760.0034
GLY 3770.0036
LEU 3780.0037
ILE 3790.0043
ASN 3800.0044
LEU 3810.0039
LYS 3820.0042
TYR 3830.0037
LEU 3840.0033
SER 3850.0029
LEU 3860.0029
SER 3870.0028
ASN 3880.0026
SER 3890.0026
PHE 3900.0030
THR 3910.0030
SER 3920.0036
LEU 3930.0038
ARG 3940.0044
THR 3950.0048
LEU 3960.0047
THR 3970.0052
ASN 3980.0055
GLU 3990.0051
THR 4000.0045
PHE 4010.0043
VAL 4020.0046
SER 4030.0040
LEU 4040.0041
ALA 4050.0048
HIS 4060.0046
SER 4070.0043
PRO 4080.0046
LEU 4090.0043
HIS 4100.0044
ILE 4110.0039
LEU 4120.0037
ASN 4130.0034
LEU 4140.0034
THR 4150.0032
LYS 4160.0030
ASN 4170.0034
LYS 4180.0037
ILE 4190.0040
SER 4200.0045
LYS 4210.0049
ILE 4220.0049
GLU 4230.0056
SER 4240.0059
ASP 4250.0058
ALA 4260.0052
PHE 4270.0050
SER 4280.0056
TRP 4290.0052
LEU 4300.0049
GLY 4310.0053
HIS 4320.0050
LEU 4330.0046
GLU 4340.0045
VAL 4350.0041
LEU 4360.0040
ASP 4370.0036
LEU 4380.0038
GLY 4390.0034
LEU 4400.0033
ASN 4410.0036
GLU 4420.0040
ILE 4430.0042
GLY 4440.0045
GLN 4450.0049
GLU 4460.0051
LEU 4470.0050
THR 4480.0056
GLY 4490.0055
GLN 4500.0060
GLU 4510.0055
TRP 4520.0053
ARG 4530.0059
GLY 4540.0059
LEU 4550.0053
GLU 4560.0057
ASN 4570.0052
ILE 4580.0047
PHE 4590.0044
GLU 4600.0039
ILE 4610.0040
TYR 4620.0036
LEU 4630.0037
SER 4640.0034
TYR 4650.0034
ASN 4660.0036
LYS 4670.0039
TYR 4680.0041
LEU 4690.0041
GLN 4700.0044
LEU 4710.0045
THR 4720.0050
ARG 4730.0051
ASN 4740.0055
SER 4750.0050
PHE 4760.0050
ALA 4770.0055
LEU 4780.0058
VAL 4790.0053
PRO 4800.0053
SER 4810.0051
LEU 4820.0046
GLN 4830.0042
ARG 4840.0038
LEU 4850.0037
MET 4860.0034
LEU 4870.0035
ARG 4880.0032
ARG 4890.0034
VAL 4900.0037
ALA 4910.0037
LEU 4920.0037
LYS 4930.0039
ASN 4940.0040
VAL 4950.0037
ASP 4960.0035
SER 4970.0041
SER 4980.0043
PRO 4990.0046
SER 5000.0042
PRO 5010.0043
PHE 5020.0041
GLN 5030.0045
PRO 5040.0049
LEU 5050.0046
ARG 5060.0045
ASN 5070.0046
LEU 5080.0041
THR 5090.0038
ILE 5100.0035
LEU 5110.0034
ASP 5120.0032
LEU 5130.0032
SER 5140.0031
ASN 5150.0033
ASN 5160.0036
ASN 5170.0036
ILE 5180.0033
ALA 5190.0032
ASN 5200.0029
ILE 5210.0029
ASN 5220.0030
ASP 5230.0029
ASP 5240.0034
MET 5250.0033
LEU 5260.0034
GLU 5270.0037
GLY 5280.0041
LEU 5290.0039
GLU 5300.0041
LYS 5310.0041
LEU 5320.0036
GLU 5330.0035
ILE 5340.0032
LEU 5350.0030
ASP 5360.0029
LEU 5370.0029
GLN 5380.0031
HIS 5390.0035
ASN 5400.0035
ASN 5410.0037
LEU 5420.0032
ALA 5430.0035
ARG 5440.0036
LEU 5450.0030
TRP 5460.0033
LYS 5470.0038
HIS 5480.0040
ALA 5490.0041
ASN 5500.0036
PRO 5510.0034
GLY 5520.0029
GLY 5530.0031
PRO 5540.0031
ILE 5550.0027
TYR 5560.0028
PHE 5570.0027
LEU 5580.0028
LYS 5590.0031
GLY 5600.0036
LEU 5610.0033
SER 5620.0037
HIS 5630.0038
LEU 5640.0033
HIS 5650.0033
ILE 5660.0029
LEU 5670.0027
ASN 5680.0028
LEU 5690.0030
GLU 5700.0034
SER 5710.0039
ASN 5720.0037
GLY 5730.0043
PHE 5740.0040
ASP 5750.0046
GLU 5760.0043
ILE 5770.0039
PRO 5780.0039
VAL 5790.0042
GLU 5800.0038
VAL 5810.0032
PHE 5820.0033
LYS 5830.0037
ASP 5840.0037
LEU 5850.0035
PHE 5860.0040
GLU 5870.0039
LEU 5880.0033
LYS 5890.0033
ILE 5900.0029
ILE 5910.0028
ASP 5920.0029
LEU 5930.0033
GLY 5940.0038
LEU 5950.0044
ASN 5960.0046
ASN 5970.0053
LEU 5980.0051
ASN 5990.0059
THR 6000.0060
LEU 6010.0052
PRO 6020.0054
ALA 6030.0058
SER 6040.0054
VAL 6050.0046
PHE 6060.0042
ASN 6070.0048
ASN 6080.0044
GLN 6090.0040
VAL 6100.0046
SER 6110.0040
LEU 6120.0035
LYS 6130.0033
SER 6140.0029
LEU 6150.0031
ASN 6160.0031
LEU 6170.0039
GLN 6180.0043
LYS 6190.0052
ASN 6200.0054
LEU 6210.0064
ILE 6220.0061
THR 6230.0072
SER 6240.0072
VAL 6250.0064
GLU 6260.0068
LYS 6270.0067
LYS 6280.0068
VAL 6290.0057
PHE 6300.0052
GLY 6310.0056
PRO 6320.0052
ALA 6330.0043
PHE 6340.0045
ARG 6350.0050
ASN 6360.0043
LEU 6370.0036
THR 6380.0033
GLU 6390.0029
LEU 6400.0031
ASP 6410.0033
MET 6420.0043
ARG 6430.0047
PHE 6440.0058
ASN 6450.0061
PRO 6460.0074
PHE 6470.0073
ASP 6480.0084
CYS 6490.0088
THR 6500.0097
CYS 6510.0098
GLU 6520.0096
SER 6530.0085
ILE 6540.0077
ALA 6550.0082
TRP 6560.0075
PHE 6570.0063
VAL 6580.0065
ASN 6590.0068
TRP 6600.0057
ILE 6610.0047
ASN 6620.0049
GLU 6630.0053
THR 6640.0041
HIS 6650.0033
THR 6660.0035
ASN 6670.0028
ILE 6680.0030
PRO 6690.0031
GLU 6700.0039
LEU 6710.0042
SER 6720.0050
SER 6730.0055
HIS 6740.0055
TYR 6750.0057
LEU 6760.0070
CYS 6770.0080
ASN 6780.0089
THR 6790.0097
PRO 6800.0107
PRO 6810.0114
HIS 6820.0113
TYR 6830.0099
HIS 6840.0098
GLY 6850.0089
PHE 6860.0082
PRO 6870.0069
VAL 6880.0067
ARG 6890.0060
LEU 6900.0070
PHE 6910.0080
ASP 6920.0090
THR 6930.0091
SER 6940.0102
SER 6950.0111
CYS 6960.0108
GLU 10.0033
ALA 20.0039
ALA 30.0038
ALA 40.0030
LYS 50.0032
MET 60.0038
GLN 70.0033
ARG 80.0026
LEU 90.0032
VAL 100.0035
LEU 110.0028
LEU 120.0024
LEU 130.0032
ALA 140.0032
ILE 150.0024
SER 160.0026
LEU 170.0036
LEU 180.0033
LEU 190.0029
TYR 200.0037
GLN 210.0046
ASP 220.0044
LEU 230.0045
PRO 240.0058
VAL 250.0060
ARG 260.0081
SER 270.0092
GLU 280.0096
PHE 290.0114
GLU 300.0116
LEU 310.0108
ASP 320.0108
ARG 330.0120
ILE 340.0119
CYS 350.0114
GLY 360.0117
TYR 370.0117
GLY 380.0123
THR 390.0128
ALA 400.0126
ARG 410.0126
CYS 420.0120
ARG 430.0125
LYS 440.0123
LYS 450.0129
CYS 460.0129
ARG 470.0133
SER 480.0136
GLN 490.0137
GLU 500.0133
TYR 510.0130
ARG 520.0121
ILE 530.0116
GLY 540.0107
ARG 550.0102
CYS 560.0103
PRO 570.0093
ASN 580.0099
THR 590.0099
TYR 600.0110
ALA 610.0117
CYS 620.0118
CYS 630.0122
LEU 640.0125
ARG 650.0130
LYS 660.0142
TRP 670.0127
ASP 680.0107
GLU 690.0104
SER 700.0083
LEU 710.0076
LEU 720.0095
ASN 730.0070
ARG 740.0058
THR 750.0087
LYS 760.0073
PRO 770.0079
GLU 780.0069
ALA 790.0079
ALA 800.0098
ALA 810.0074
LYS 820.0070
LYS 830.0064
GLU 840.0057
MET 850.0054
ASN 860.0058
LEU 870.0057
SER 880.0060
VAL 890.0059
GLY 900.0062
LEU 910.0062
GLY 920.0065
GLY 930.0065
GLY 940.0066
SER 950.0061
ASN 960.0060
LEU 970.0056
SER 980.0056
VAL 990.0052
GLY 1000.0052
LEU 1010.0052
GLY 1020.0053
GLU 1030.0055
ILE 1040.0056
GLY 1050.0058
GLY 1060.0060
GLY 1070.0055
SER 1080.0051
LYS 1090.0047
LEU 1100.0042
LEU 1110.0046
ASP 1120.0044
ILE 1130.0049
ASN 1140.0046
LEU 1150.0051
GLY 1160.0051
ARG 1170.0053
GLY 1180.0058
GLY 1190.0061
GLY 1200.0065
SER 1210.0064
MET 1220.0067
VAL 1230.0064
ASP 1240.0068
LEU 1250.0065
THR 1260.0067
PHE 1270.0065
GLY 1280.0065
GLY 1290.0065
VAL 1300.0063
GLY 1310.0061
GLY 1320.0060
GLY 1330.0060
SER 1340.0062
THR 1350.0062
PHE 1360.0063
THR 1370.0063
PHE 1380.0064
PHE 1390.0064
PRO 1400.0066
LEU 1410.0058
VAL 1420.0057
ILE 1430.0052
GLY 1440.0049
GLY 1450.0046
GLY 1460.0052
SER 1470.0051
ASP 1480.0052
ALA 1490.0051
MET 1500.0053
TYR 1510.0050
LEU 1520.0054
GLY 1530.0053
PHE 1540.0057
ALA 1550.0058
ALA 1560.0065
GLY 1570.0060
GLY 1580.0055
GLY 1590.0053
SER 1600.0051
ALA 1610.0063
GLY 1620.0065
GLY 1630.0069
GLU 1640.0071
ASN 1650.0071
HIS 1660.0071
VAL 1670.0070
ALA 1680.0072
PHE 1690.0070
GLY 1700.0074
PRO 1710.0077
GLY 1720.0080
PRO 1730.0078
GLY 1740.0078
VAL 1750.0073
ASP 1760.0076
LEU 1770.0074
THR 1780.0076
PHE 1790.0074
GLY 1800.0077
GLY 1810.0082
VAL 1820.0082
GLN 1830.0081
PHE 1840.0079
ALA 1850.0080
MET 1860.0077
VAL 1870.0083
ASN 1880.0083
ASN 1890.0083
GLY 1900.0086
PRO 1910.0096
GLY 1920.0115
PRO 1930.0139
GLY 1940.0142
GLU 1950.0119
SER 1960.0132
PHE 1970.0132
THR 1980.0154
ALA 1990.0173
GLN 2000.0186
PRO 2010.0214
ALA 2020.0214
ASP 2030.0185
MET 2040.0193
GLN 2050.0209
ALA 2060.0183
GLY 2070.0172
ILE 2080.0143
LYS 2090.0124
GLY 2100.0106
PRO 2110.0075
GLY 2120.0062
PRO 2130.0047
GLY 2140.0035
GLY 2150.0049
SER 2160.0067
ILE 2170.0070
GLN 2180.0066
VAL 2190.0068
ILE 2200.0069
ASN 2210.0075
GLY 2220.0054
SER 2230.0052
THR 2240.0055
ILE 2250.0081
GLY 2260.0123
THR 2270.0151
GLY 2280.0170
SER 2290.0178
LYS 2300.0147
LYS 2310.0098
THR 2320.0081
ILE 2330.0058
LEU 2340.0047
ILE 2350.0023
TYR 2360.0031
SER 2370.0038
ILE 2380.0046
ILE 2390.0065
GLY 2400.0072
VAL 2410.0065
LYS 2420.0075
LYS 2430.0076
GLY 2440.0077
THR 2450.0075
LEU 2460.0069
ALA 2470.0076
TRP 2480.0070
ALA 2490.0075
ARG 2500.0072
THR 2510.0075
GLY 2520.0090
PHE 2530.0078
SER 2540.0099
PRO 2550.0101
ALA 2560.0093
LYS 2570.0112
LYS 2580.0126
LEU 2590.0105
ASN 2600.0153
ALA 2610.0254
GLY 2620.0184
VAL 2630.0138
VAL 2640.0106
ARG 2650.0030
VAL 2660.0036
PHE 2670.0044
PHE 2680.0059
LEU 2690.0061
ASN 2700.0081
GLN 2710.0078
LYS 2720.0081
LYS 2730.0057
ALA 2740.0056
LYS 2750.0079
ASP 2760.0089
VAL 2770.0102
LEU 2780.0124
ARG 2790.0169
LYS 2800.0172
THR 2810.0222
SER 2820.0303
ARG 2830.0301
PRO 2840.0383
MET 2850.0425
VAL 2860.0375
ASP 2870.0397
LEU 2880.0698
THR 2890.0888
PHE 2900.1224
GLY 2910.1567
GLY 2920.1935

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.