CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 18  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0539
THR 260.0104
LYS 270.0110
CYS 280.0108
THR 290.0105
VAL 300.0114
SER 310.0111
HIS 320.0122
GLU 330.0127
VAL 340.0114
ALA 350.0110
ASP 360.0101
CYS 370.0103
SER 380.0090
HIS 390.0088
LEU 400.0102
LYS 410.0109
LEU 420.0120
THR 430.0127
GLN 440.0135
VAL 450.0132
PRO 460.0141
ASP 470.0155
ASP 480.0159
LEU 490.0148
PRO 500.0154
THR 510.0157
ASN 520.0152
ILE 530.0136
THR 540.0126
VAL 550.0111
LEU 560.0110
ASN 570.0098
LEU 580.0100
THR 590.0087
HIS 600.0086
ASN 610.0101
GLN 620.0111
LEU 630.0113
ARG 640.0117
ARG 650.0119
LEU 660.0121
PRO 670.0135
ALA 680.0136
ALA 690.0152
ASN 700.0148
PHE 710.0140
THR 720.0153
ARG 730.0158
TYR 740.0143
SER 750.0143
GLN 760.0140
LEU 770.0124
THR 780.0112
SER 790.0100
LEU 800.0098
ASP 810.0088
VAL 820.0091
GLY 830.0079
PHE 840.0081
ASN 850.0094
THR 860.0102
ILE 870.0102
SER 880.0103
LYS 890.0106
LEU 900.0102
GLU 910.0114
PRO 920.0108
GLU 930.0122
LEU 940.0119
CYS 950.0108
GLN 960.0123
LYS 970.0133
LEU 980.0123
PRO 990.0121
MET 1000.0117
LEU 1010.0103
LYS 1020.0090
VAL 1030.0083
LEU 1040.0081
ASN 1050.0075
LEU 1060.0076
GLN 1070.0068
HIS 1080.0074
ASN 1090.0085
GLU 1100.0091
LEU 1110.0086
SER 1120.0083
GLN 1130.0084
LEU 1140.0075
SER 1150.0078
ASP 1160.0071
LYS 1170.0085
THR 1180.0085
PHE 1190.0076
ALA 1200.0077
PHE 1210.0091
CYS 1220.0086
THR 1230.0082
ASN 1240.0087
LEU 1250.0076
THR 1260.0069
GLU 1270.0063
LEU 1280.0060
HIS 1290.0058
LEU 1300.0059
MET 1310.0056
SER 1320.0065
ASN 1330.0073
SER 1340.0075
ILE 1350.0069
GLN 1360.0073
LYS 1370.0069
ILE 1380.0060
LYS 1390.0064
ASN 1400.0058
ASN 1410.0048
PRO 1420.0056
PHE 1430.0047
VAL 1440.0043
LYS 1450.0056
GLN 1460.0055
LYS 1470.0053
ASN 1480.0063
LEU 1490.0054
ILE 1500.0052
THR 1510.0045
LEU 1520.0040
ASP 1530.0041
LEU 1540.0043
SER 1550.0043
HIS 1560.0055
ASN 1570.0061
GLY 1580.0068
LEU 1590.0059
SER 1600.0064
SER 1610.0057
THR 1620.0043
LYS 1630.0044
LEU 1640.0039
GLY 1650.0039
THR 1660.0039
GLN 1670.0029
VAL 1680.0026
GLN 1690.0026
LEU 1700.0032
GLU 1710.0036
ASN 1720.0045
LEU 1730.0036
GLN 1740.0040
GLU 1750.0032
LEU 1760.0026
LEU 1770.0029
LEU 1780.0034
SER 1790.0037
ASN 1800.0048
ASN 1810.0055
LYS 1820.0065
ILE 1830.0059
GLN 1840.0070
ALA 1850.0067
LEU 1860.0059
LYS 1870.0064
SER 1880.0060
GLU 1890.0058
GLU 1900.0050
LEU 1910.0041
ASP 1920.0042
ILE 1930.0030
PHE 1940.0029
ALA 1950.0040
ASN 1960.0039
SER 1970.0035
SER 1980.0042
LEU 1990.0033
LYS 2000.0038
LYS 2010.0028
LEU 2020.0026
GLU 2030.0025
LEU 2040.0034
SER 2050.0035
SER 2060.0046
ASN 2070.0052
GLN 2080.0063
ILE 2090.0062
LYS 2100.0075
GLU 2110.0076
PHE 2120.0070
SER 2130.0078
PRO 2140.0082
GLY 2150.0074
CYS 2160.0062
PHE 2170.0054
HIS 2180.0062
ALA 2190.0053
ILE 2200.0043
GLY 2210.0048
ARG 2220.0049
LEU 2230.0043
PHE 2240.0044
GLY 2250.0035
LEU 2260.0033
PHE 2270.0028
LEU 2280.0036
ASN 2290.0032
ASN 2300.0041
VAL 2310.0049
GLN 2320.0059
LEU 2330.0061
GLY 2340.0065
PRO 2350.0068
SER 2360.0080
LEU 2370.0072
THR 2380.0063
GLU 2390.0074
LYS 2400.0077
LEU 2410.0065
CYS 2420.0067
LEU 2430.0079
GLU 2440.0072
LEU 2450.0064
ALA 2460.0076
ASN 2470.0079
THR 2480.0066
SER 2490.0061
ILE 2500.0053
ARG 2510.0050
ASN 2520.0039
LEU 2530.0038
SER 2540.0030
LEU 2550.0036
SER 2560.0031
ASN 2570.0038
SER 2580.0046
GLN 2590.0052
LEU 2600.0052
SER 2610.0053
THR 2620.0055
THR 2630.0055
SER 2640.0064
ASN 2650.0070
THR 2660.0080
THR 2670.0069
PHE 2680.0066
LEU 2690.0078
GLY 2700.0078
LEU 2710.0070
LYS 2720.0080
TRP 2730.0083
THR 2740.0071
ASN 2750.0068
LEU 2760.0058
THR 2770.0052
MET 2780.0040
LEU 2790.0038
ASP 2800.0029
LEU 2810.0032
SER 2820.0025
TYR 2830.0031
ASN 2840.0039
ASN 2850.0041
LEU 2860.0040
ASN 2870.0042
VAL 2880.0045
VAL 2890.0043
GLY 2900.0051
ASN 2910.0054
ASP 2920.0059
SER 2930.0057
PHE 2940.0053
ALA 2950.0062
TRP 2960.0070
LEU 2970.0062
PRO 2980.0067
GLN 2990.0064
LEU 3000.0052
GLU 3010.0046
TYR 3020.0036
PHE 3030.0031
PHE 3040.0023
LEU 3050.0022
GLU 3060.0016
TYR 3070.0023
ASN 3080.0028
ASN 3090.0032
ILE 3100.0029
GLN 3110.0031
HIS 3120.0027
LEU 3130.0024
PHE 3140.0030
SER 3150.0031
HIS 3160.0043
SER 3170.0040
LEU 3180.0038
HIS 3190.0048
GLY 3200.0055
LEU 3210.0048
PHE 3220.0053
ASN 3230.0054
VAL 3240.0044
ARG 3250.0042
TYR 3260.0033
LEU 3270.0025
ASN 3280.0017
LEU 3290.0013
LYS 3300.0011
ARG 3310.0018
SER 3320.0018
PHE 3330.0020
THR 3340.0029
LYS 3350.0034
GLN 3360.0040
SER 3370.0049
ILE 3380.0053
SER 3390.0060
LEU 3400.0053
ALA 3410.0043
SER 3420.0038
LEU 3430.0030
PRO 3440.0023
LYS 3450.0018
ILE 3460.0013
ASP 3470.0015
ASP 3480.0013
PHE 3490.0022
SER 3500.0022
PHE 3510.0026
GLN 3520.0034
TRP 3530.0041
LEU 3540.0039
LYS 3550.0048
CYS 3560.0048
LEU 3570.0039
GLU 3580.0041
HIS 3590.0033
LEU 3600.0024
ASN 3610.0017
MET 3620.0013
GLU 3630.0015
ASP 3640.0020
ASN 3650.0021
ASP 3660.0027
ILE 3670.0022
PRO 3680.0028
GLY 3690.0028
ILE 3700.0026
LYS 3710.0022
SER 3720.0026
ASN 3730.0021
MET 3740.0017
PHE 3750.0024
THR 3760.0028
GLY 3770.0035
LEU 3780.0036
ILE 3790.0046
ASN 3800.0048
LEU 3810.0038
LYS 3820.0043
TYR 3830.0036
LEU 3840.0028
SER 3850.0024
LEU 3860.0023
SER 3870.0024
ASN 3880.0026
SER 3890.0022
PHE 3900.0029
THR 3910.0038
SER 3920.0044
LEU 3930.0044
ARG 3940.0054
THR 3950.0058
LEU 3960.0054
THR 3970.0061
ASN 3980.0064
GLU 3990.0055
THR 4000.0046
PHE 4010.0041
VAL 4020.0043
SER 4030.0034
LEU 4040.0038
ALA 4050.0048
HIS 4060.0045
SER 4070.0042
PRO 4080.0050
LEU 4090.0044
HIS 4100.0047
ILE 4110.0040
LEU 4120.0036
ASN 4130.0031
LEU 4140.0034
THR 4150.0032
LYS 4160.0033
ASN 4170.0037
LYS 4180.0046
ILE 4190.0050
SER 4200.0059
LYS 4210.0064
ILE 4220.0063
GLU 4230.0072
SER 4240.0077
ASP 4250.0073
ALA 4260.0061
PHE 4270.0057
SER 4280.0065
TRP 4290.0057
LEU 4300.0055
GLY 4310.0061
HIS 4320.0057
LEU 4330.0052
GLU 4340.0054
VAL 4350.0046
LEU 4360.0043
ASP 4370.0037
LEU 4380.0042
GLY 4390.0038
LEU 4400.0036
ASN 4410.0043
GLU 4420.0053
ILE 4430.0057
GLY 4440.0066
GLN 4450.0072
GLU 4460.0078
LEU 4470.0075
THR 4480.0086
GLY 4490.0081
GLN 4500.0085
GLU 4510.0072
TRP 4520.0070
ARG 4530.0078
GLY 4540.0075
LEU 4550.0068
GLU 4560.0072
ASN 4570.0066
ILE 4580.0060
PHE 4590.0059
GLU 4600.0051
ILE 4610.0048
TYR 4620.0041
LEU 4630.0045
SER 4640.0038
TYR 4650.0039
ASN 4660.0047
LYS 4670.0056
TYR 4680.0061
LEU 4690.0062
GLN 4700.0071
LEU 4710.0072
THR 4720.0084
ARG 4730.0090
ASN 4740.0091
SER 4750.0079
PHE 4760.0075
ALA 4770.0087
LEU 4780.0086
VAL 4790.0078
PRO 4800.0082
SER 4810.0078
LEU 4820.0068
GLN 4830.0064
ARG 4840.0053
LEU 4850.0051
MET 4860.0041
LEU 4870.0044
ARG 4880.0036
ARG 4890.0041
VAL 4900.0049
ALA 4910.0054
LEU 4920.0056
LYS 4930.0065
ASN 4940.0072
VAL 4950.0065
ASP 4960.0069
SER 4970.0081
SER 4980.0091
PRO 4990.0092
SER 5000.0079
PRO 5010.0076
PHE 5020.0071
GLN 5030.0082
PRO 5040.0087
LEU 5050.0077
ARG 5060.0080
ASN 5070.0076
LEU 5080.0067
THR 5090.0063
ILE 5100.0054
LEU 5110.0048
ASP 5120.0039
LEU 5130.0040
SER 5140.0033
ASN 5150.0037
ASN 5160.0045
ASN 5170.0046
ILE 5180.0046
ALA 5190.0046
ASN 5200.0051
ILE 5210.0052
ASN 5220.0062
ASP 5230.0063
ASP 5240.0073
MET 5250.0065
LEU 5260.0064
GLU 5270.0076
GLY 5280.0085
LEU 5290.0076
GLU 5300.0082
LYS 5310.0077
LEU 5320.0065
GLU 5330.0061
ILE 5340.0051
LEU 5350.0045
ASP 5360.0034
LEU 5370.0033
GLN 5380.0031
HIS 5390.0037
ASN 5400.0039
ASN 5410.0041
LEU 5420.0035
ALA 5430.0032
ARG 5440.0037
LEU 5450.0036
TRP 5460.0031
LYS 5470.0031
HIS 5480.0030
ALA 5490.0034
ASN 5500.0040
PRO 5510.0051
GLY 5520.0056
GLY 5530.0045
PRO 5540.0040
ILE 5550.0047
TYR 5560.0051
PHE 5570.0053
LEU 5580.0054
LYS 5590.0066
GLY 5600.0077
LEU 5610.0070
SER 5620.0080
HIS 5630.0078
LEU 5640.0065
HIS 5650.0064
ILE 5660.0052
LEU 5670.0044
ASN 5680.0036
LEU 5690.0033
GLU 5700.0036
SER 5710.0042
ASN 5720.0038
GLY 5730.0044
PHE 5740.0037
ASP 5750.0043
GLU 5760.0037
ILE 5770.0037
PRO 5780.0040
VAL 5790.0051
GLU 5800.0056
VAL 5810.0050
PHE 5820.0058
LYS 5830.0068
ASP 5840.0076
LEU 5850.0071
PHE 5860.0083
GLU 5870.0081
LEU 5880.0069
LYS 5890.0070
ILE 5900.0059
ILE 5910.0051
ASP 5920.0044
LEU 5930.0043
GLY 5940.0050
LEU 5950.0054
ASN 5960.0053
ASN 5970.0062
LEU 5980.0058
ASN 5990.0070
THR 6000.0067
LEU 6010.0059
PRO 6020.0059
ALA 6030.0071
SER 6040.0075
VAL 6050.0064
PHE 6060.0069
ASN 6070.0079
ASN 6080.0081
GLN 6090.0079
VAL 6100.0093
SER 6110.0088
LEU 6120.0077
LYS 6130.0079
SER 6140.0068
LEU 6150.0063
ASN 6160.0055
LEU 6170.0060
GLN 6180.0065
LYS 6190.0073
ASN 6200.0071
LEU 6210.0085
ILE 6220.0086
THR 6230.0103
SER 6240.0104
VAL 6250.0101
GLU 6260.0103
LYS 6270.0107
LYS 6280.0097
VAL 6290.0081
PHE 6300.0087
GLY 6310.0096
PRO 6320.0093
ALA 6330.0084
PHE 6340.0094
ARG 6350.0107
ASN 6360.0098
LEU 6370.0088
THR 6380.0088
GLU 6390.0078
LEU 6400.0075
ASP 6410.0069
MET 6420.0077
ARG 6430.0083
PHE 6440.0092
ASN 6450.0095
PRO 6460.0113
PHE 6470.0119
ASP 6480.0133
CYS 6490.0149
THR 6500.0159
CYS 6510.0163
GLU 6520.0148
SER 6530.0132
ILE 6540.0133
ALA 6550.0149
TRP 6560.0138
PHE 6570.0123
VAL 6580.0137
ASN 6590.0146
TRP 6600.0129
ILE 6610.0121
ASN 6620.0135
GLU 6630.0138
THR 6640.0115
HIS 6650.0099
THR 6660.0101
ASN 6670.0089
ILE 6680.0086
PRO 6690.0079
GLU 6700.0090
LEU 6710.0104
SER 6720.0120
SER 6730.0114
HIS 6740.0104
TYR 6750.0111
LEU 6760.0127
CYS 6770.0139
ASN 6780.0143
THR 6790.0149
PRO 6800.0169
PRO 6810.0184
HIS 6820.0194
TYR 6830.0174
HIS 6840.0167
GLY 6850.0156
PHE 6860.0157
PRO 6870.0141
VAL 6880.0137
ARG 6890.0139
LEU 6900.0159
PHE 6910.0165
ASP 6920.0184
THR 6930.0181
SER 6940.0203
SER 6950.0207
CYS 6960.0192
GLU 10.0068
ALA 20.0076
ALA 30.0072
ALA 40.0060
LYS 50.0063
MET 60.0069
GLN 70.0060
ARG 80.0052
LEU 90.0059
VAL 100.0062
LEU 110.0049
LEU 120.0046
LEU 130.0055
ALA 140.0053
ILE 150.0041
SER 160.0045
LEU 170.0053
LEU 180.0046
LEU 190.0038
TYR 200.0046
GLN 210.0051
ASP 220.0043
LEU 230.0040
PRO 240.0047
VAL 250.0054
ARG 260.0051
SER 270.0054
GLU 280.0055
PHE 290.0052
GLU 300.0056
LEU 310.0063
ASP 320.0064
ARG 330.0064
ILE 340.0072
CYS 350.0080
GLY 360.0093
TYR 370.0096
GLY 380.0086
THR 390.0086
ALA 400.0079
ARG 410.0071
CYS 420.0070
ARG 430.0070
LYS 440.0073
LYS 450.0079
CYS 460.0074
ARG 470.0064
SER 480.0066
GLN 490.0068
GLU 500.0076
TYR 510.0089
ARG 520.0090
ILE 530.0096
GLY 540.0094
ARG 550.0087
CYS 560.0076
PRO 570.0070
ASN 580.0067
THR 590.0076
TYR 600.0076
ALA 610.0080
CYS 620.0082
CYS 630.0077
LEU 640.0082
ARG 650.0076
LYS 660.0071
TRP 670.0080
ASP 680.0059
GLU 690.0059
SER 700.0069
LEU 710.0087
LEU 720.0091
ASN 730.0086
ARG 740.0110
THR 750.0126
LYS 760.0095
PRO 770.0093
GLU 780.0098
ALA 790.0094
ALA 800.0094
ALA 810.0151
LYS 820.0145
LYS 830.0146
GLU 840.0185
MET 850.0174
ASN 860.0200
LEU 870.0177
SER 880.0195
VAL 890.0181
GLY 900.0198
LEU 910.0199
GLY 920.0213
GLY 930.0249
GLY 940.0265
SER 950.0251
ASN 960.0241
LEU 970.0222
SER 980.0226
VAL 990.0207
GLY 1000.0219
LEU 1010.0195
GLY 1020.0217
GLU 1030.0182
ILE 1040.0221
GLY 1050.0217
GLY 1060.0220
GLY 1070.0197
SER 1080.0156
LYS 1090.0149
LEU 1100.0134
LEU 1110.0139
ASP 1120.0146
ILE 1130.0148
ASN 1140.0156
LEU 1150.0147
GLY 1160.0164
ARG 1170.0148
GLY 1180.0161
GLY 1190.0142
GLY 1200.0148
SER 1210.0155
MET 1220.0151
VAL 1230.0145
ASP 1240.0151
LEU 1250.0138
THR 1260.0152
PHE 1270.0139
GLY 1280.0153
GLY 1290.0141
VAL 1300.0131
GLY 1310.0120
GLY 1320.0110
GLY 1330.0103
SER 1340.0102
THR 1350.0100
PHE 1360.0092
THR 1370.0076
PHE 1380.0074
PHE 1390.0059
PRO 1400.0059
LEU 1410.0037
VAL 1420.0046
ILE 1430.0037
GLY 1440.0054
GLY 1450.0058
GLY 1460.0043
SER 1470.0057
ASP 1480.0066
ALA 1490.0071
MET 1500.0061
TYR 1510.0056
LEU 1520.0066
GLY 1530.0060
PHE 1540.0074
ALA 1550.0066
ALA 1560.0083
GLY 1570.0081
GLY 1580.0084
GLY 1590.0090
SER 1600.0100
ALA 1610.0115
GLY 1620.0133
GLY 1630.0144
GLU 1640.0146
ASN 1650.0133
HIS 1660.0139
VAL 1670.0121
ALA 1680.0132
PHE 1690.0118
GLY 1700.0129
PRO 1710.0127
GLY 1720.0120
PRO 1730.0103
GLY 1740.0108
VAL 1750.0106
ASP 1760.0125
LEU 1770.0117
THR 1780.0136
PHE 1790.0129
GLY 1800.0149
GLY 1810.0166
VAL 1820.0152
GLN 1830.0146
PHE 1840.0126
ALA 1850.0127
MET 1860.0110
VAL 1870.0108
ASN 1880.0102
ASN 1890.0111
GLY 1900.0110
PRO 1910.0167
GLY 1920.0201
PRO 1930.0294
GLY 1940.0361
GLU 1950.0317
SER 1960.0329
PHE 1970.0286
THR 1980.0290
ALA 1990.0372
GLN 2000.0411
PRO 2010.0539
ALA 2020.0524
ASP 2030.0358
MET 2040.0398
GLN 2050.0423
ALA 2060.0276
GLY 2070.0213
ILE 2080.0132
LYS 2090.0075
GLY 2100.0040
PRO 2110.0050
GLY 2120.0064
PRO 2130.0085
GLY 2140.0077
GLY 2150.0053
SER 2160.0073
ILE 2170.0020
GLN 2180.0048
VAL 2190.0018
ILE 2200.0037
ASN 2210.0079
GLY 2220.0112
SER 2230.0170
THR 2240.0191
ILE 2250.0230
GLY 2260.0292
THR 2270.0306
GLY 2280.0315
SER 2290.0295
LYS 2300.0276
LYS 2310.0232
THR 2320.0229
ILE 2330.0177
LEU 2340.0180
ILE 2350.0138
TYR 2360.0128
SER 2370.0157
ILE 2380.0147
ILE 2390.0211
GLY 2400.0206
VAL 2410.0159
LYS 2420.0176
LYS 2430.0129
GLY 2440.0102
THR 2450.0152
LEU 2460.0145
ALA 2470.0206
TRP 2480.0219
ALA 2490.0267
ARG 2500.0278
THR 2510.0275
GLY 2520.0309
PHE 2530.0275
SER 2540.0318
PRO 2550.0285
ALA 2560.0290
LYS 2570.0295
LYS 2580.0236
LEU 2590.0183
ASN 2600.0133
ALA 2610.0052
GLY 2620.0079
VAL 2630.0086
VAL 2640.0071
ARG 2650.0124
VAL 2660.0117
PHE 2670.0147
PHE 2680.0174
LEU 2690.0198
ASN 2700.0242
GLN 2710.0263
LYS 2720.0252
LYS 2730.0170
ALA 2740.0094
LYS 2750.0106
ASP 2760.0039
VAL 2770.0117
LEU 2780.0141
ARG 2790.0274
LYS 2800.0310
THR 2810.0411
SER 2820.0463
ARG 2830.0423
PRO 2840.0480
MET 2850.0363
VAL 2860.0373
ASP 2870.0232
LEU 2880.0181
THR 2890.0148
PHE 2900.0290
GLY 2910.0344
GLY 2920.0504

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.