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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 19  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0844
THR 260.0117
LYS 270.0109
CYS 280.0099
THR 290.0108
VAL 300.0107
SER 310.0114
HIS 320.0115
GLU 330.0100
VAL 340.0092
ALA 350.0086
ASP 360.0087
CYS 370.0081
SER 380.0079
HIS 390.0085
LEU 400.0090
LYS 410.0085
LEU 420.0076
THR 430.0070
GLN 440.0063
VAL 450.0055
PRO 460.0071
ASP 470.0069
ASP 480.0086
LEU 490.0085
PRO 500.0090
THR 510.0078
ASN 520.0089
ILE 530.0083
THR 540.0079
VAL 550.0073
LEU 560.0063
ASN 570.0064
LEU 580.0056
THR 590.0055
HIS 600.0061
ASN 610.0062
GLN 620.0063
LEU 630.0048
ARG 640.0047
ARG 650.0033
LEU 660.0020
PRO 670.0021
ALA 680.0006
ALA 690.0018
ASN 700.0033
PHE 710.0030
THR 720.0030
ARG 730.0049
TYR 740.0053
SER 750.0054
GLN 760.0069
LEU 770.0060
THR 780.0067
SER 790.0059
LEU 800.0042
ASP 810.0041
VAL 820.0030
GLY 830.0030
PHE 840.0037
ASN 850.0039
THR 860.0042
ILE 870.0029
SER 880.0037
LYS 890.0033
LEU 900.0019
GLU 910.0023
PRO 920.0033
GLU 930.0027
LEU 940.0018
CYS 950.0036
GLN 960.0040
LYS 970.0031
LEU 980.0042
PRO 990.0059
MET 1000.0068
LEU 1010.0055
LYS 1020.0064
VAL 1030.0054
LEU 1040.0036
ASN 1050.0028
LEU 1060.0010
GLN 1070.0011
HIS 1080.0018
ASN 1090.0022
GLU 1100.0033
LEU 1110.0028
SER 1120.0041
GLN 1130.0051
LEU 1140.0050
SER 1150.0061
ASP 1160.0070
LYS 1170.0062
THR 1180.0046
PHE 1190.0050
ALA 1200.0065
PHE 1210.0060
CYS 1220.0057
THR 1230.0075
ASN 1240.0075
LEU 1250.0064
THR 1260.0070
GLU 1270.0056
LEU 1280.0041
HIS 1290.0028
LEU 1300.0018
MET 1310.0008
SER 1320.0011
ASN 1330.0019
SER 1340.0034
ILE 1350.0040
GLN 1360.0052
LYS 1370.0062
ILE 1380.0063
LYS 1390.0077
ASN 1400.0086
ASN 1410.0083
PRO 1420.0068
PHE 1430.0069
VAL 1440.0085
LYS 1450.0082
GLN 1460.0076
LYS 1470.0091
ASN 1480.0087
LEU 1490.0073
ILE 1500.0074
THR 1510.0060
LEU 1520.0050
ASP 1530.0035
LEU 1540.0031
SER 1550.0019
HIS 1560.0013
ASN 1570.0026
GLY 1580.0040
LEU 1590.0046
SER 1600.0056
SER 1610.0062
THR 1620.0061
LYS 1630.0073
LEU 1640.0071
GLY 1650.0085
THR 1660.0100
GLN 1670.0106
VAL 1680.0105
GLN 1690.0094
LEU 1700.0084
GLU 1710.0096
ASN 1720.0092
LEU 1730.0078
GLN 1740.0075
GLU 1750.0060
LEU 1760.0052
LEU 1770.0038
LEU 1780.0036
SER 1790.0023
ASN 1800.0017
ASN 1810.0030
LYS 1820.0041
ILE 1830.0045
GLN 1840.0052
ALA 1850.0058
LEU 1860.0061
LYS 1870.0074
SER 1880.0083
GLU 1890.0091
GLU 1900.0080
LEU 1910.0078
ASP 1920.0093
ILE 1930.0091
PHE 1940.0087
ALA 1950.0099
ASN 1960.0104
SER 1970.0091
SER 1980.0087
LEU 1990.0073
LYS 2000.0070
LYS 2010.0056
LEU 2020.0050
GLU 2030.0038
LEU 2040.0034
SER 2050.0022
SER 2060.0017
ASN 2070.0029
GLN 2080.0033
ILE 2090.0040
LYS 2100.0047
GLU 2110.0053
PHE 2120.0055
SER 2130.0068
PRO 2140.0074
GLY 2150.0078
CYS 2160.0072
PHE 2170.0068
HIS 2180.0080
ALA 2190.0085
ILE 2200.0082
GLY 2210.0091
ARG 2220.0083
LEU 2230.0070
PHE 2240.0067
GLY 2250.0055
LEU 2260.0044
PHE 2270.0035
LEU 2280.0027
ASN 2290.0018
ASN 2300.0011
VAL 2310.0020
GLN 2320.0019
LEU 2330.0021
GLY 2340.0016
PRO 2350.0015
SER 2360.0025
LEU 2370.0029
THR 2380.0024
GLU 2390.0028
LYS 2400.0038
LEU 2410.0038
CYS 2420.0038
LEU 2430.0046
GLU 2440.0054
LEU 2450.0053
ALA 2460.0056
ASN 2470.0066
THR 2480.0066
SER 2490.0069
ILE 2500.0058
ARG 2510.0055
ASN 2520.0048
LEU 2530.0038
SER 2540.0030
LEU 2550.0020
SER 2560.0016
ASN 2570.0008
SER 2580.0011
GLN 2590.0006
LEU 2600.0005
SER 2610.0004
THR 2620.0006
THR 2630.0009
SER 2640.0008
ASN 2650.0013
THR 2660.0014
THR 2670.0015
PHE 2680.0024
LEU 2690.0027
GLY 2700.0036
LEU 2710.0038
LYS 2720.0040
TRP 2730.0048
THR 2740.0051
ASN 2750.0056
LEU 2760.0045
THR 2770.0049
MET 2780.0043
LEU 2790.0033
ASP 2800.0028
LEU 2810.0019
SER 2820.0017
TYR 2830.0010
ASN 2840.0007
ASN 2850.0009
LEU 2860.0012
ASN 2870.0016
VAL 2880.0018
VAL 2890.0020
GLY 2900.0021
ASN 2910.0026
ASP 2920.0027
SER 2930.0021
PHE 2940.0028
ALA 2950.0033
TRP 2960.0031
LEU 2970.0037
PRO 2980.0045
GLN 2990.0050
LEU 3000.0045
GLU 3010.0049
TYR 3020.0044
PHE 3030.0036
PHE 3040.0031
LEU 3050.0025
GLU 3060.0023
TYR 3070.0017
ASN 3080.0016
ASN 3090.0019
ILE 3100.0023
GLN 3110.0028
HIS 3120.0034
LEU 3130.0035
PHE 3140.0038
SER 3150.0044
HIS 3160.0039
SER 3170.0033
LEU 3180.0037
HIS 3190.0040
GLY 3200.0043
LEU 3210.0043
PHE 3220.0052
ASN 3230.0053
VAL 3240.0048
ARG 3250.0053
TYR 3260.0047
LEU 3270.0040
ASN 3280.0035
LEU 3290.0031
LYS 3300.0029
ARG 3310.0023
SER 3320.0024
PHE 3330.0027
THR 3340.0026
LYS 3350.0027
GLN 3360.0032
SER 3370.0033
ILE 3380.0039
SER 3390.0042
LEU 3400.0041
ALA 3410.0041
SER 3420.0037
LEU 3430.0037
PRO 3440.0035
LYS 3450.0040
ILE 3460.0043
ASP 3470.0049
ASP 3480.0056
PHE 3490.0057
SER 3500.0049
PHE 3510.0050
GLN 3520.0057
TRP 3530.0053
LEU 3540.0053
LYS 3550.0060
CYS 3560.0060
LEU 3570.0054
GLU 3580.0057
HIS 3590.0051
LEU 3600.0046
ASN 3610.0039
MET 3620.0038
GLU 3630.0033
ASP 3640.0028
ASN 3650.0031
ASP 3660.0035
ILE 3670.0041
PRO 3680.0046
GLY 3690.0050
ILE 3700.0054
LYS 3710.0060
SER 3720.0067
ASN 3730.0065
MET 3740.0057
PHE 3750.0058
THR 3760.0064
GLY 3770.0066
LEU 3780.0062
ILE 3790.0069
ASN 3800.0066
LEU 3810.0060
LYS 3820.0060
TYR 3830.0053
LEU 3840.0049
SER 3850.0042
LEU 3860.0041
SER 3870.0035
ASN 3880.0031
SER 3890.0036
PHE 3900.0040
THR 3910.0038
SER 3920.0040
LEU 3930.0044
ARG 3940.0044
THR 3950.0049
LEU 3960.0051
THR 3970.0059
ASN 3980.0064
GLU 3990.0068
THR 4000.0061
PHE 4010.0062
VAL 4020.0070
SER 4030.0068
LEU 4040.0065
ALA 4050.0073
HIS 4060.0076
SER 4070.0070
PRO 4080.0070
LEU 4090.0062
HIS 4100.0059
ILE 4110.0051
LEU 4120.0048
ASN 4130.0041
LEU 4140.0039
THR 4150.0032
LYS 4160.0028
ASN 4170.0035
LYS 4180.0033
ILE 4190.0037
SER 4200.0038
LYS 4210.0042
ILE 4220.0045
GLU 4230.0053
SER 4240.0056
ASP 4250.0060
ALA 4260.0058
PHE 4270.0058
SER 4280.0065
TRP 4290.0069
LEU 4300.0064
GLY 4310.0068
HIS 4320.0067
LEU 4330.0059
GLU 4340.0055
VAL 4350.0047
LEU 4360.0043
ASP 4370.0036
LEU 4380.0034
GLY 4390.0026
LEU 4400.0021
ASN 4410.0027
GLU 4420.0028
ILE 4430.0030
GLY 4440.0030
GLN 4450.0032
GLU 4460.0030
LEU 4470.0030
THR 4480.0036
GLY 4490.0037
GLN 4500.0047
GLU 4510.0047
TRP 4520.0047
ARG 4530.0056
GLY 4540.0062
LEU 4550.0056
GLU 4560.0061
ASN 4570.0061
ILE 4580.0050
PHE 4590.0048
GLU 4600.0039
ILE 4610.0035
TYR 4620.0029
LEU 4630.0023
SER 4640.0017
TYR 4650.0013
ASN 4660.0018
LYS 4670.0020
TYR 4680.0019
LEU 4690.0018
GLN 4700.0018
LEU 4710.0015
THR 4720.0017
ARG 4730.0015
ASN 4740.0025
SER 4750.0026
PHE 4760.0029
ALA 4770.0033
LEU 4780.0042
VAL 4790.0042
PRO 4800.0042
SER 4810.0045
LEU 4820.0040
GLN 4830.0042
ARG 4840.0037
LEU 4850.0027
MET 4860.0023
LEU 4870.0015
ARG 4880.0012
ARG 4890.0005
VAL 4900.0009
ALA 4910.0008
LEU 4920.0005
LYS 4930.0009
ASN 4940.0008
VAL 4950.0002
ASP 4960.0009
SER 4970.0003
SER 4980.0005
PRO 4990.0008
SER 5000.0011
PRO 5010.0012
PHE 5020.0018
GLN 5030.0020
PRO 5040.0026
LEU 5050.0030
ARG 5060.0034
ASN 5070.0042
LEU 5080.0036
THR 5090.0042
ILE 5100.0036
LEU 5110.0026
ASP 5120.0021
LEU 5130.0014
SER 5140.0014
ASN 5150.0008
ASN 5160.0004
ASN 5170.0011
ILE 5180.0012
ALA 5190.0019
ASN 5200.0019
ILE 5210.0019
ASN 5220.0022
ASP 5230.0029
ASP 5240.0025
MET 5250.0021
LEU 5260.0028
GLU 5270.0031
GLY 5280.0035
LEU 5290.0036
GLU 5300.0044
LYS 5310.0047
LEU 5320.0041
GLU 5330.0046
ILE 5340.0039
LEU 5350.0031
ASP 5360.0025
LEU 5370.0021
GLN 5380.0020
HIS 5390.0015
ASN 5400.0016
ASN 5410.0022
LEU 5420.0026
ALA 5430.0033
ARG 5440.0036
LEU 5450.0035
TRP 5460.0041
LYS 5470.0046
HIS 5480.0053
ALA 5490.0053
ASN 5500.0045
PRO 5510.0047
GLY 5520.0046
GLY 5530.0048
PRO 5540.0044
ILE 5550.0038
TYR 5560.0041
PHE 5570.0035
LEU 5580.0039
LYS 5590.0045
GLY 5600.0048
LEU 5610.0047
SER 5620.0054
HIS 5630.0053
LEU 5640.0048
HIS 5650.0050
ILE 5660.0043
LEU 5670.0038
ASN 5680.0031
LEU 5690.0030
GLU 5700.0026
SER 5710.0023
ASN 5720.0025
GLY 5730.0031
PHE 5740.0036
ASP 5750.0043
GLU 5760.0047
ILE 5770.0048
PRO 5780.0052
VAL 5790.0059
GLU 5800.0057
VAL 5810.0049
PHE 5820.0052
LYS 5830.0058
ASP 5840.0058
LEU 5850.0055
PHE 5860.0062
GLU 5870.0060
LEU 5880.0055
LYS 5890.0054
ILE 5900.0048
ILE 5910.0044
ASP 5920.0037
LEU 5930.0036
GLY 5940.0032
LEU 5950.0027
ASN 5960.0032
ASN 5970.0038
LEU 5980.0043
ASN 5990.0049
THR 6000.0055
LEU 6010.0055
PRO 6020.0062
ALA 6030.0068
SER 6040.0068
VAL 6050.0060
PHE 6060.0059
ASN 6070.0067
ASN 6080.0065
GLN 6090.0061
VAL 6100.0068
SER 6110.0064
LEU 6120.0058
LYS 6130.0056
SER 6140.0049
LEU 6150.0046
ASN 6160.0040
LEU 6170.0039
GLN 6180.0034
LYS 6190.0031
ASN 6200.0037
LEU 6210.0042
ILE 6220.0047
THR 6230.0052
SER 6240.0058
VAL 6250.0058
GLU 6260.0065
LYS 6270.0069
LYS 6280.0071
VAL 6290.0063
PHE 6300.0061
GLY 6310.0067
PRO 6320.0067
ALA 6330.0060
PHE 6340.0061
ARG 6350.0067
ASN 6360.0065
LEU 6370.0058
THR 6380.0055
GLU 6390.0048
LEU 6400.0046
ASP 6410.0040
MET 6420.0041
ARG 6430.0035
PHE 6440.0033
ASN 6450.0039
PRO 6460.0043
PHE 6470.0048
ASP 6480.0055
CYS 6490.0058
THR 6500.0065
CYS 6510.0070
GLU 6520.0071
SER 6530.0063
ILE 6540.0060
ALA 6550.0066
TRP 6560.0066
PHE 6570.0058
VAL 6580.0057
ASN 6590.0063
TRP 6600.0061
ILE 6610.0052
ASN 6620.0055
GLU 6630.0061
THR 6640.0058
HIS 6650.0056
THR 6660.0055
ASN 6670.0048
ILE 6680.0044
PRO 6690.0037
GLU 6700.0033
LEU 6710.0039
SER 6720.0037
SER 6730.0031
HIS 6740.0032
TYR 6750.0039
LEU 6760.0040
CYS 6770.0046
ASN 6780.0047
THR 6790.0054
PRO 6800.0059
PRO 6810.0056
HIS 6820.0057
TYR 6830.0053
HIS 6840.0047
GLY 6850.0040
PHE 6860.0043
PRO 6870.0042
VAL 6880.0047
ARG 6890.0048
LEU 6900.0049
PHE 6910.0056
ASP 6920.0064
THR 6930.0069
SER 6940.0075
SER 6950.0077
CYS 6960.0078
GLU 10.0033
ALA 20.0031
ALA 30.0034
ALA 40.0030
LYS 50.0024
MET 60.0026
GLN 70.0027
ARG 80.0022
LEU 90.0018
VAL 100.0020
LEU 110.0019
LEU 120.0012
LEU 130.0012
ALA 140.0015
ILE 150.0012
SER 160.0006
LEU 170.0009
LEU 180.0012
LEU 190.0010
TYR 200.0009
GLN 210.0016
ASP 220.0018
LEU 230.0021
PRO 240.0028
VAL 250.0027
ARG 260.0041
SER 270.0063
GLU 280.0067
PHE 290.0091
GLU 300.0100
LEU 310.0100
ASP 320.0097
ARG 330.0115
ILE 340.0122
CYS 350.0122
GLY 360.0129
TYR 370.0136
GLY 380.0141
THR 390.0148
ALA 400.0137
ARG 410.0129
CYS 420.0116
ARG 430.0117
LYS 440.0109
LYS 450.0117
CYS 460.0128
ARG 470.0136
SER 480.0142
GLN 490.0145
GLU 500.0137
TYR 510.0134
ARG 520.0120
ILE 530.0120
GLY 540.0107
ARG 550.0096
CYS 560.0097
PRO 570.0084
ASN 580.0082
THR 590.0081
TYR 600.0096
ALA 610.0111
CYS 620.0117
CYS 630.0123
LEU 640.0130
ARG 650.0136
LYS 660.0154
TRP 670.0133
ASP 680.0116
GLU 690.0119
SER 700.0089
LEU 710.0079
LEU 720.0099
ASN 730.0073
ARG 740.0045
THR 750.0074
LYS 760.0054
PRO 770.0042
GLU 780.0031
ALA 790.0031
ALA 800.0043
ALA 810.0053
LYS 820.0037
LYS 830.0040
GLU 840.0068
MET 850.0059
ASN 860.0083
LEU 870.0070
SER 880.0088
VAL 890.0085
GLY 900.0100
LEU 910.0112
GLY 920.0123
GLY 930.0162
GLY 940.0170
SER 950.0161
ASN 960.0140
LEU 970.0129
SER 980.0122
VAL 990.0110
GLY 1000.0111
LEU 1010.0091
GLY 1020.0104
GLU 1030.0089
ILE 1040.0124
GLY 1050.0130
GLY 1060.0134
GLY 1070.0135
SER 1080.0121
LYS 1090.0107
LEU 1100.0109
LEU 1110.0094
ASP 1120.0115
ILE 1130.0104
ASN 1140.0129
LEU 1150.0113
GLY 1160.0136
ARG 1170.0133
GLY 1180.0124
GLY 1190.0092
GLY 1200.0073
SER 1210.0074
MET 1220.0056
VAL 1230.0051
ASP 1240.0049
LEU 1250.0032
THR 1260.0042
PHE 1270.0027
GLY 1280.0041
GLY 1290.0041
VAL 1300.0027
GLY 1310.0044
GLY 1320.0048
GLY 1330.0058
SER 1340.0053
THR 1350.0060
PHE 1360.0051
THR 1370.0072
PHE 1380.0064
PHE 1390.0084
PRO 1400.0078
LEU 1410.0091
VAL 1420.0096
ILE 1430.0097
GLY 1440.0117
GLY 1450.0112
GLY 1460.0120
SER 1470.0121
ASP 1480.0101
ALA 1490.0102
MET 1500.0077
TYR 1510.0084
LEU 1520.0064
GLY 1530.0077
PHE 1540.0062
ALA 1550.0081
ALA 1560.0057
GLY 1570.0068
GLY 1580.0071
GLY 1590.0074
SER 1600.0072
ALA 1610.0081
GLY 1620.0073
GLY 1630.0071
GLU 1640.0057
ASN 1650.0048
HIS 1660.0045
VAL 1670.0031
ALA 1680.0037
PHE 1690.0020
GLY 1700.0036
PRO 1710.0032
GLY 1720.0055
PRO 1730.0067
GLY 1740.0074
VAL 1750.0053
ASP 1760.0065
LEU 1770.0067
THR 1780.0079
PHE 1790.0084
GLY 1800.0101
GLY 1810.0121
VAL 1820.0126
GLN 1830.0114
PHE 1840.0111
ALA 1850.0110
MET 1860.0102
VAL 1870.0136
ASN 1880.0139
ASN 1890.0171
GLY 1900.0175
PRO 1910.0185
GLY 1920.0205
PRO 1930.0277
GLY 1940.0314
GLU 1950.0268
SER 1960.0324
PHE 1970.0340
THR 1980.0437
ALA 1990.0489
GLN 2000.0543
PRO 2010.0632
ALA 2020.0624
ASP 2030.0493
MET 2040.0499
GLN 2050.0522
ALA 2060.0392
GLY 2070.0337
ILE 2080.0265
LYS 2090.0193
GLY 2100.0141
PRO 2110.0078
GLY 2120.0045
PRO 2130.0062
GLY 2140.0118
GLY 2150.0119
SER 2160.0199
ILE 2170.0198
GLN 2180.0180
VAL 2190.0179
ILE 2200.0167
ASN 2210.0136
GLY 2220.0142
SER 2230.0192
THR 2240.0196
ILE 2250.0272
GLY 2260.0342
THR 2270.0368
GLY 2280.0398
SER 2290.0403
LYS 2300.0378
LYS 2310.0314
THR 2320.0303
ILE 2330.0268
LEU 2340.0261
ILE 2350.0232
TYR 2360.0232
SER 2370.0191
ILE 2380.0184
ILE 2390.0178
GLY 2400.0176
VAL 2410.0205
LYS 2420.0227
LYS 2430.0254
GLY 2440.0281
THR 2450.0273
LEU 2460.0264
ALA 2470.0261
TRP 2480.0270
ALA 2490.0256
ARG 2500.0273
THR 2510.0269
GLY 2520.0303
PHE 2530.0295
SER 2540.0330
PRO 2550.0337
ALA 2560.0337
LYS 2570.0367
LYS 2580.0368
LEU 2590.0344
ASN 2600.0362
ALA 2610.0310
GLY 2620.0283
VAL 2630.0243
VAL 2640.0205
ARG 2650.0195
VAL 2660.0186
PHE 2670.0163
PHE 2680.0125
LEU 2690.0113
ASN 2700.0094
GLN 2710.0105
LYS 2720.0093
LYS 2730.0036
ALA 2740.0034
LYS 2750.0037
ASP 2760.0111
VAL 2770.0128
LEU 2780.0146
ARG 2790.0201
LYS 2800.0250
THR 2810.0323
SER 2820.0402
ARG 2830.0365
PRO 2840.0446
MET 2850.0477
VAL 2860.0436
ASP 2870.0277
LEU 2880.0412
THR 2890.0347
PHE 2900.0523
GLY 2910.0622
GLY 2920.0844

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.