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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 25  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0665
THR 260.0072
LYS 270.0064
CYS 280.0050
THR 290.0061
VAL 300.0057
SER 310.0071
HIS 320.0067
GLU 330.0042
VAL 340.0041
ALA 350.0034
ASP 360.0037
CYS 370.0029
SER 380.0027
HIS 390.0027
LEU 400.0034
LYS 410.0024
LEU 420.0024
THR 430.0027
GLN 440.0028
VAL 450.0022
PRO 460.0031
ASP 470.0037
ASP 480.0043
LEU 490.0033
PRO 500.0032
THR 510.0021
ASN 520.0017
ILE 530.0017
THR 540.0018
VAL 550.0022
LEU 560.0013
ASN 570.0017
LEU 580.0006
THR 590.0013
HIS 600.0009
ASN 610.0008
GLN 620.0014
LEU 630.0016
ARG 640.0024
ARG 650.0025
LEU 660.0022
PRO 670.0029
ALA 680.0029
ALA 690.0032
ASN 700.0025
PHE 710.0021
THR 720.0027
ARG 730.0022
TYR 740.0012
SER 750.0014
GLN 760.0009
LEU 770.0012
THR 780.0019
SER 790.0019
LEU 800.0016
ASP 810.0017
VAL 820.0015
GLY 830.0019
PHE 840.0016
ASN 850.0015
THR 860.0019
ILE 870.0022
SER 880.0028
LYS 890.0030
LEU 900.0028
GLU 910.0029
PRO 920.0032
GLU 930.0031
LEU 940.0026
CYS 950.0027
GLN 960.0031
LYS 970.0026
LEU 980.0022
PRO 990.0026
MET 1000.0023
LEU 1010.0023
LYS 1020.0025
VAL 1030.0024
LEU 1040.0025
ASN 1050.0024
LEU 1060.0024
GLN 1070.0024
HIS 1080.0023
ASN 1090.0023
GLU 1100.0026
LEU 1110.0027
SER 1120.0027
GLN 1130.0028
LEU 1140.0028
SER 1150.0028
ASP 1160.0031
LYS 1170.0030
THR 1180.0029
PHE 1190.0030
ALA 1200.0031
PHE 1210.0032
CYS 1220.0030
THR 1230.0032
ASN 1240.0029
LEU 1250.0028
THR 1260.0027
GLU 1270.0027
LEU 1280.0027
HIS 1290.0026
LEU 1300.0026
MET 1310.0026
SER 1320.0026
ASN 1330.0026
SER 1340.0027
ILE 1350.0027
GLN 1360.0024
LYS 1370.0024
ILE 1380.0025
LYS 1390.0025
ASN 1400.0025
ASN 1410.0027
PRO 1420.0027
PHE 1430.0028
VAL 1440.0029
LYS 1450.0030
GLN 1460.0029
LYS 1470.0029
ASN 1480.0030
LEU 1490.0030
ILE 1500.0031
THR 1510.0028
LEU 1520.0027
ASP 1530.0027
LEU 1540.0025
SER 1550.0026
HIS 1560.0026
ASN 1570.0025
GLY 1580.0024
LEU 1590.0023
SER 1600.0022
SER 1610.0021
THR 1620.0023
LYS 1630.0022
LEU 1640.0024
GLY 1650.0023
THR 1660.0022
GLN 1670.0023
VAL 1680.0025
GLN 1690.0026
LEU 1700.0028
GLU 1710.0028
ASN 1720.0031
LEU 1730.0030
GLN 1740.0032
GLU 1750.0031
LEU 1760.0026
LEU 1770.0026
LEU 1780.0023
SER 1790.0024
ASN 1800.0023
ASN 1810.0023
LYS 1820.0021
ILE 1830.0020
GLN 1840.0020
ALA 1850.0021
LEU 1860.0023
LYS 1870.0024
SER 1880.0027
GLU 1890.0024
GLU 1900.0022
LEU 1910.0024
ASP 1920.0025
ILE 1930.0024
PHE 1940.0028
ALA 1950.0030
ASN 1960.0030
SER 1970.0031
SER 1980.0035
LEU 1990.0033
LYS 2000.0038
LYS 2010.0033
LEU 2020.0028
GLU 2030.0026
LEU 2040.0022
SER 2050.0022
SER 2060.0021
ASN 2070.0019
GLN 2080.0018
ILE 2090.0020
LYS 2100.0021
GLU 2110.0024
PHE 2120.0026
SER 2130.0029
PRO 2140.0033
GLY 2150.0034
CYS 2160.0029
PHE 2170.0032
HIS 2180.0035
ALA 2190.0031
ILE 2200.0033
GLY 2210.0035
ARG 2220.0038
LEU 2230.0036
PHE 2240.0041
GLY 2250.0038
LEU 2260.0032
PHE 2270.0028
LEU 2280.0023
ASN 2290.0022
ASN 2300.0017
VAL 2310.0017
GLN 2320.0016
LEU 2330.0020
GLY 2340.0021
PRO 2350.0026
SER 2360.0029
LEU 2370.0027
THR 2380.0028
GLU 2390.0034
LYS 2400.0035
LEU 2410.0031
CYS 2420.0037
LEU 2430.0041
GLU 2440.0038
LEU 2450.0040
ALA 2460.0046
ASN 2470.0051
THR 2480.0048
SER 2490.0050
ILE 2500.0044
ARG 2510.0049
ASN 2520.0043
LEU 2530.0036
SER 2540.0031
LEU 2550.0025
SER 2560.0021
ASN 2570.0015
SER 2580.0015
GLN 2590.0013
LEU 2600.0017
SER 2610.0015
THR 2620.0020
THR 2630.0025
SER 2640.0032
ASN 2650.0040
THR 2660.0041
THR 2670.0035
PHE 2680.0038
LEU 2690.0046
GLY 2700.0048
LEU 2710.0047
LYS 2720.0054
TRP 2730.0058
THR 2740.0054
ASN 2750.0058
LEU 2760.0052
THR 2770.0053
MET 2780.0046
LEU 2790.0038
ASP 2800.0032
LEU 2810.0024
SER 2820.0022
TYR 2830.0017
ASN 2840.0010
ASN 2850.0009
LEU 2860.0008
ASN 2870.0011
VAL 2880.0017
VAL 2890.0019
GLY 2900.0028
ASN 2910.0033
ASP 2920.0039
SER 2930.0035
PHE 2940.0038
ALA 2950.0046
TRP 2960.0050
LEU 2970.0050
PRO 2980.0057
GLN 2990.0059
LEU 3000.0051
GLU 3010.0053
TYR 3020.0047
PHE 3030.0038
PHE 3040.0033
LEU 3050.0024
GLU 3060.0025
TYR 3070.0022
ASN 3080.0012
ASN 3090.0011
ILE 3100.0006
GLN 3110.0011
HIS 3120.0011
LEU 3130.0011
PHE 3140.0020
SER 3150.0024
HIS 3160.0031
SER 3170.0026
LEU 3180.0030
HIS 3190.0038
GLY 3200.0047
LEU 3210.0044
PHE 3220.0051
ASN 3230.0056
VAL 3240.0048
ARG 3250.0052
TYR 3260.0047
LEU 3270.0037
ASN 3280.0035
LEU 3290.0026
LYS 3300.0031
ARG 3310.0026
SER 3320.0017
PHE 3330.0012
THR 3340.0017
LYS 3350.0027
GLN 3360.0033
SER 3370.0040
ILE 3380.0047
SER 3390.0053
LEU 3400.0046
ALA 3410.0038
SER 3420.0029
LEU 3430.0022
PRO 3440.0012
LYS 3450.0009
ILE 3460.0006
ASP 3470.0012
ASP 3480.0013
PHE 3490.0020
SER 3500.0020
PHE 3510.0025
GLN 3520.0032
TRP 3530.0038
LEU 3540.0039
LYS 3550.0047
CYS 3560.0052
LEU 3570.0045
GLU 3580.0050
HIS 3590.0047
LEU 3600.0038
ASN 3610.0038
MET 3620.0030
GLU 3630.0036
ASP 3640.0035
ASN 3650.0027
ASP 3660.0024
ILE 3670.0019
PRO 3680.0020
GLY 3690.0018
ILE 3700.0015
LYS 3710.0008
SER 3720.0008
ASN 3730.0012
MET 3740.0013
PHE 3750.0022
THR 3760.0023
GLY 3770.0032
LEU 3780.0035
ILE 3790.0042
ASN 3800.0047
LEU 3810.0042
LYS 3820.0047
TYR 3830.0047
LEU 3840.0039
SER 3850.0041
LEU 3860.0036
SER 3870.0042
ASN 3880.0039
SER 3890.0032
PHE 3900.0029
THR 3910.0030
SER 3920.0032
LEU 3930.0029
ARG 3940.0032
THR 3950.0029
LEU 3960.0029
THR 3970.0024
ASN 3980.0021
GLU 3990.0017
THR 4000.0021
PHE 4010.0021
VAL 4020.0016
SER 4030.0018
LEU 4040.0025
ALA 4050.0024
HIS 4060.0028
SER 4070.0033
PRO 4080.0039
LEU 4090.0039
HIS 4100.0045
ILE 4110.0046
LEU 4120.0041
ASN 4130.0044
LEU 4140.0041
THR 4150.0047
LYS 4160.0045
ASN 4170.0040
LYS 4180.0042
ILE 4190.0039
SER 4200.0040
LYS 4210.0036
ILE 4220.0034
GLU 4230.0031
SER 4240.0030
ASP 4250.0027
ALA 4260.0027
PHE 4270.0029
SER 4280.0026
TRP 4290.0024
LEU 4300.0030
GLY 4310.0030
HIS 4320.0035
LEU 4330.0038
GLU 4340.0045
VAL 4350.0047
LEU 4360.0044
ASP 4370.0048
LEU 4380.0046
GLY 4390.0052
LEU 4400.0055
ASN 4410.0050
GLU 4420.0050
ILE 4430.0046
GLY 4440.0046
GLN 4450.0042
GLU 4460.0041
LEU 4470.0038
THR 4480.0035
GLY 4490.0034
GLN 4500.0032
GLU 4510.0033
TRP 4520.0034
ARG 4530.0030
GLY 4540.0029
LEU 4550.0033
GLU 4560.0031
ASN 4570.0036
ILE 4580.0039
PHE 4590.0045
GLU 4600.0048
ILE 4610.0047
TYR 4620.0051
LEU 4630.0051
SER 4640.0056
TYR 4650.0059
ASN 4660.0054
LYS 4670.0055
TYR 4680.0051
LEU 4690.0046
GLN 4700.0043
LEU 4710.0041
THR 4720.0037
ARG 4730.0034
ASN 4740.0034
SER 4750.0037
PHE 4760.0037
ALA 4770.0035
LEU 4780.0034
VAL 4790.0036
PRO 4800.0035
SER 4810.0040
LEU 4820.0043
GLN 4830.0046
ARG 4840.0048
LEU 4850.0049
MET 4860.0051
LEU 4870.0052
ARG 4880.0056
ARG 4890.0059
VAL 4900.0056
ALA 4910.0055
LEU 4920.0049
LYS 4930.0047
ASN 4940.0042
VAL 4950.0041
ASP 4960.0035
SER 4970.0034
SER 4980.0030
PRO 4990.0029
SER 5000.0031
PRO 5010.0036
PHE 5020.0035
GLN 5030.0031
PRO 5040.0031
LEU 5050.0034
ARG 5060.0031
ASN 5070.0036
LEU 5080.0040
THR 5090.0043
ILE 5100.0047
LEU 5110.0045
ASP 5120.0050
LEU 5130.0049
SER 5140.0054
ASN 5150.0059
ASN 5160.0057
ASN 5170.0055
ILE 5180.0048
ALA 5190.0045
ASN 5200.0040
ILE 5210.0033
ASN 5220.0028
ASP 5230.0021
ASP 5240.0021
MET 5250.0027
LEU 5260.0025
GLU 5270.0018
GLY 5280.0018
LEU 5290.0024
GLU 5300.0024
LYS 5310.0032
LEU 5320.0033
GLU 5330.0039
ILE 5340.0042
LEU 5350.0038
ASP 5360.0045
LEU 5370.0043
GLN 5380.0048
HIS 5390.0054
ASN 5400.0051
ASN 5410.0049
LEU 5420.0039
ALA 5430.0038
ARG 5440.0042
LEU 5450.0034
TRP 5460.0028
LYS 5470.0036
HIS 5480.0040
ALA 5490.0050
ASN 5500.0047
PRO 5510.0054
GLY 5520.0047
GLY 5530.0040
PRO 5540.0030
ILE 5550.0024
TYR 5560.0016
PHE 5570.0016
LEU 5580.0013
LYS 5590.0011
GLY 5600.0016
LEU 5610.0015
SER 5620.0025
HIS 5630.0033
LEU 5640.0029
HIS 5650.0039
ILE 5660.0041
LEU 5670.0033
ASN 5680.0039
LEU 5690.0035
GLU 5700.0043
SER 5710.0049
ASN 5720.0044
GLY 5730.0044
PHE 5740.0033
ASP 5750.0033
GLU 5760.0027
ILE 5770.0019
PRO 5780.0023
VAL 5790.0024
GLU 5800.0023
VAL 5810.0017
PHE 5820.0017
LYS 5830.0025
ASP 5840.0027
LEU 5850.0025
PHE 5860.0042
GLU 5870.0044
LEU 5880.0035
LYS 5890.0044
ILE 5900.0042
ILE 5910.0033
ASP 5920.0037
LEU 5930.0031
GLY 5940.0039
LEU 5950.0046
ASN 5960.0039
ASN 5970.0037
LEU 5980.0025
ASN 5990.0021
THR 6000.0020
LEU 6010.0018
PRO 6020.0025
ALA 6030.0030
SER 6040.0032
VAL 6050.0023
PHE 6060.0027
ASN 6070.0037
ASN 6080.0039
GLN 6090.0037
VAL 6100.0047
SER 6110.0049
LEU 6120.0043
LYS 6130.0052
SER 6140.0047
LEU 6150.0037
ASN 6160.0039
LEU 6170.0031
GLN 6180.0041
LYS 6190.0043
ASN 6200.0034
LEU 6210.0029
ILE 6220.0020
THR 6230.0015
SER 6240.0013
VAL 6250.0018
GLU 6260.0024
LYS 6270.0032
LYS 6280.0031
VAL 6290.0024
PHE 6300.0027
GLY 6310.0037
PRO 6320.0040
ALA 6330.0035
PHE 6340.0042
ARG 6350.0051
ASN 6360.0056
LEU 6370.0052
THR 6380.0061
GLU 6390.0056
LEU 6400.0047
ASP 6410.0045
MET 6420.0036
ARG 6430.0043
PHE 6440.0043
ASN 6450.0032
PRO 6460.0027
PHE 6470.0020
ASP 6480.0013
CYS 6490.0016
THR 6500.0018
CYS 6510.0028
GLU 6520.0026
SER 6530.0018
ILE 6540.0023
ALA 6550.0033
TRP 6560.0035
PHE 6570.0033
VAL 6580.0039
ASN 6590.0045
TRP 6600.0045
ILE 6610.0047
ASN 6620.0054
GLU 6630.0052
THR 6640.0050
HIS 6650.0056
THR 6660.0059
ASN 6670.0062
ILE 6680.0056
PRO 6690.0062
GLU 6700.0062
LEU 6710.0055
SER 6720.0057
SER 6730.0058
HIS 6740.0051
TYR 6750.0041
LEU 6760.0036
CYS 6770.0025
ASN 6780.0025
THR 6790.0017
PRO 6800.0013
PRO 6810.0017
HIS 6820.0015
TYR 6830.0020
HIS 6840.0025
GLY 6850.0035
PHE 6860.0034
PRO 6870.0039
VAL 6880.0034
ARG 6890.0044
LEU 6900.0044
PHE 6910.0037
ASP 6920.0042
THR 6930.0045
SER 6940.0053
SER 6950.0046
CYS 6960.0044
GLU 10.0053
ALA 20.0055
ALA 30.0056
ALA 40.0044
LYS 50.0040
MET 60.0047
GLN 70.0044
ARG 80.0032
LEU 90.0035
VAL 100.0044
LEU 110.0038
LEU 120.0031
LEU 130.0040
ALA 140.0046
ILE 150.0039
SER 160.0043
LEU 170.0052
LEU 180.0053
LEU 190.0049
TYR 200.0053
GLN 210.0058
ASP 220.0058
LEU 230.0058
PRO 240.0058
VAL 250.0059
ARG 260.0059
SER 270.0062
GLU 280.0056
PHE 290.0053
GLU 300.0073
LEU 310.0095
ASP 320.0083
ARG 330.0093
ILE 340.0114
CYS 350.0120
GLY 360.0134
TYR 370.0156
GLY 380.0153
THR 390.0158
ALA 400.0132
ARG 410.0112
CYS 420.0091
ARG 430.0084
LYS 440.0067
LYS 450.0076
CYS 460.0095
ARG 470.0112
SER 480.0121
GLN 490.0134
GLU 500.0120
TYR 510.0107
ARG 520.0090
ILE 530.0099
GLY 540.0085
ARG 550.0073
CYS 560.0077
PRO 570.0073
ASN 580.0056
THR 590.0049
TYR 600.0058
ALA 610.0074
CYS 620.0093
CYS 630.0105
LEU 640.0123
ARG 650.0136
LYS 660.0156
TRP 670.0145
ASP 680.0135
GLU 690.0145
SER 700.0124
LEU 710.0109
LEU 720.0127
ASN 730.0118
ARG 740.0083
THR 750.0088
LYS 760.0093
PRO 770.0054
GLU 780.0062
ALA 790.0052
ALA 800.0014
ALA 810.0053
LYS 820.0092
LYS 830.0076
GLU 840.0075
MET 850.0081
ASN 860.0052
LEU 870.0059
SER 880.0021
VAL 890.0028
GLY 900.0015
LEU 910.0028
GLY 920.0061
GLY 930.0113
GLY 940.0125
SER 950.0104
ASN 960.0076
LEU 970.0080
SER 980.0079
VAL 990.0107
GLY 1000.0117
LEU 1010.0155
GLY 1020.0209
GLU 1030.0252
ILE 1040.0338
GLY 1050.0397
GLY 1060.0462
GLY 1070.0410
SER 1080.0358
LYS 1090.0285
LEU 1100.0241
LEU 1110.0175
ASP 1120.0184
ILE 1130.0142
ASN 1140.0164
LEU 1150.0127
GLY 1160.0120
ARG 1170.0099
GLY 1180.0053
GLY 1190.0026
GLY 1200.0048
SER 1210.0037
MET 1220.0065
VAL 1230.0060
ASP 1240.0070
LEU 1250.0082
THR 1260.0077
PHE 1270.0086
GLY 1280.0070
GLY 1290.0087
VAL 1300.0090
GLY 1310.0053
GLY 1320.0063
GLY 1330.0074
SER 1340.0096
THR 1350.0112
PHE 1360.0145
THR 1370.0170
PHE 1380.0171
PHE 1390.0195
PRO 1400.0198
LEU 1410.0203
VAL 1420.0208
ILE 1430.0201
GLY 1440.0214
GLY 1450.0203
GLY 1460.0221
SER 1470.0207
ASP 1480.0175
ALA 1490.0187
MET 1500.0175
TYR 1510.0173
LEU 1520.0160
GLY 1530.0176
PHE 1540.0165
ALA 1550.0182
ALA 1560.0116
GLY 1570.0108
GLY 1580.0092
GLY 1590.0089
SER 1600.0082
ALA 1610.0100
GLY 1620.0091
GLY 1630.0100
GLU 1640.0105
ASN 1650.0123
HIS 1660.0117
VAL 1670.0130
ALA 1680.0123
PHE 1690.0123
GLY 1700.0132
PRO 1710.0155
GLY 1720.0195
PRO 1730.0220
GLY 1740.0214
VAL 1750.0183
ASP 1760.0173
LEU 1770.0171
THR 1780.0160
PHE 1790.0161
GLY 1800.0154
GLY 1810.0170
VAL 1820.0196
GLN 1830.0199
PHE 1840.0214
ALA 1850.0226
MET 1860.0221
VAL 1870.0236
ASN 1880.0240
ASN 1890.0256
GLY 1900.0257
PRO 1910.0201
GLY 1920.0207
PRO 1930.0238
GLY 1940.0282
GLU 1950.0236
SER 1960.0184
PHE 1970.0221
THR 1980.0160
ALA 1990.0141
GLN 2000.0261
PRO 2010.0344
ALA 2020.0282
ASP 2030.0184
MET 2040.0360
GLN 2050.0298
ALA 2060.0611
GLY 2070.0665
ILE 2080.0448
LYS 2090.0454
GLY 2100.0350
PRO 2110.0112
GLY 2120.0099
PRO 2130.0048
GLY 2140.0155
GLY 2150.0120
SER 2160.0276
ILE 2170.0193
GLN 2180.0126
VAL 2190.0104
ILE 2200.0079
ASN 2210.0160
GLY 2220.0183
SER 2230.0336
THR 2240.0429
ILE 2250.0470
GLY 2260.0651
THR 2270.0637
GLY 2280.0476
SER 2290.0360
LYS 2300.0210
LYS 2310.0247
THR 2320.0178
ILE 2330.0215
LEU 2340.0218
ILE 2350.0167
TYR 2360.0224
SER 2370.0134
ILE 2380.0151
ILE 2390.0115
GLY 2400.0101
VAL 2410.0177
LYS 2420.0147
LYS 2430.0210
GLY 2440.0346
THR 2450.0363
LEU 2460.0383
ALA 2470.0369
TRP 2480.0388
ALA 2490.0362
ARG 2500.0377
THR 2510.0343
GLY 2520.0385
PHE 2530.0285
SER 2540.0366
PRO 2550.0278
ALA 2560.0377
LYS 2570.0447
LYS 2580.0425
LEU 2590.0505
ASN 2600.0597
ALA 2610.0506
GLY 2620.0377
VAL 2630.0333
VAL 2640.0221
ARG 2650.0130
VAL 2660.0098
PHE 2670.0053
PHE 2680.0118
LEU 2690.0061
ASN 2700.0136
GLN 2710.0121
LYS 2720.0137
LYS 2730.0119
ALA 2740.0093
LYS 2750.0098
ASP 2760.0127
VAL 2770.0140
LEU 2780.0118
ARG 2790.0127
LYS 2800.0178
THR 2810.0227
SER 2820.0222
ARG 2830.0218
PRO 2840.0209
MET 2850.0216
VAL 2860.0223
ASP 2870.0244
LEU 2880.0216
THR 2890.0253
PHE 2900.0256
GLY 2910.0334
GLY 2920.0338

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.