CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 27  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0538
THR 260.0116
LYS 270.0105
CYS 280.0083
THR 290.0101
VAL 300.0096
SER 310.0121
HIS 320.0112
GLU 330.0070
VAL 340.0067
ALA 350.0055
ASP 360.0060
CYS 370.0044
SER 380.0038
HIS 390.0037
LEU 400.0050
LYS 410.0032
LEU 420.0038
THR 430.0047
GLN 440.0051
VAL 450.0042
PRO 460.0056
ASP 470.0069
ASP 480.0079
LEU 490.0063
PRO 500.0063
THR 510.0049
ASN 520.0038
ILE 530.0030
THR 540.0022
VAL 550.0029
LEU 560.0016
ASN 570.0022
LEU 580.0007
THR 590.0020
HIS 600.0014
ASN 610.0015
GLN 620.0028
LEU 630.0033
ARG 640.0046
ARG 650.0048
LEU 660.0043
PRO 670.0055
ALA 680.0056
ALA 690.0062
ASN 700.0050
PHE 710.0044
THR 720.0056
ARG 730.0050
TYR 740.0032
SER 750.0032
GLN 760.0016
LEU 770.0015
THR 780.0020
SER 790.0023
LEU 800.0023
ASP 810.0026
VAL 820.0027
GLY 830.0034
PHE 840.0033
ASN 850.0034
THR 860.0041
ILE 870.0043
SER 880.0053
LYS 890.0055
LEU 900.0049
GLU 910.0052
PRO 920.0055
GLU 930.0054
LEU 940.0046
CYS 950.0046
GLN 960.0052
LYS 970.0046
LEU 980.0038
PRO 990.0040
MET 1000.0032
LEU 1010.0033
LYS 1020.0033
VAL 1030.0034
LEU 1040.0038
ASN 1050.0039
LEU 1060.0040
GLN 1070.0042
HIS 1080.0045
ASN 1090.0046
GLU 1100.0050
LEU 1110.0049
SER 1120.0050
GLN 1130.0049
LEU 1140.0047
SER 1150.0047
ASP 1160.0051
LYS 1170.0050
THR 1180.0048
PHE 1190.0048
ALA 1200.0050
PHE 1210.0051
CYS 1220.0047
THR 1230.0047
ASN 1240.0042
LEU 1250.0042
THR 1260.0040
GLU 1270.0041
LEU 1280.0041
HIS 1290.0042
LEU 1300.0043
MET 1310.0045
SER 1320.0047
ASN 1330.0047
SER 1340.0048
ILE 1350.0046
GLN 1360.0042
LYS 1370.0042
ILE 1380.0042
LYS 1390.0043
ASN 1400.0045
ASN 1410.0044
PRO 1420.0045
PHE 1430.0046
VAL 1440.0046
LYS 1450.0047
GLN 1460.0045
LYS 1470.0045
ASN 1480.0047
LEU 1490.0048
ILE 1500.0050
THR 1510.0046
LEU 1520.0042
ASP 1530.0043
LEU 1540.0041
SER 1550.0042
HIS 1560.0044
ASN 1570.0042
GLY 1580.0040
LEU 1590.0037
SER 1600.0037
SER 1610.0038
THR 1620.0041
LYS 1630.0041
LEU 1640.0041
GLY 1650.0041
THR 1660.0042
GLN 1670.0044
VAL 1680.0047
GLN 1690.0047
LEU 1700.0049
GLU 1710.0050
ASN 1720.0055
LEU 1730.0052
GLN 1740.0057
GLU 1750.0054
LEU 1760.0045
LEU 1770.0044
LEU 1780.0038
SER 1790.0041
ASN 1800.0040
ASN 1810.0037
LYS 1820.0034
ILE 1830.0035
GLN 1840.0035
ALA 1850.0039
LEU 1860.0045
LYS 1870.0048
SER 1880.0054
GLU 1890.0050
GLU 1900.0044
LEU 1910.0048
ASP 1920.0051
ILE 1930.0049
PHE 1940.0054
ALA 1950.0060
ASN 1960.0061
SER 1970.0059
SER 1980.0067
LEU 1990.0063
LYS 2000.0070
LYS 2010.0062
LEU 2020.0053
GLU 2030.0048
LEU 2040.0040
SER 2050.0041
SER 2060.0035
ASN 2070.0033
GLN 2080.0031
ILE 2090.0036
LYS 2100.0039
GLU 2110.0046
PHE 2120.0052
SER 2130.0056
PRO 2140.0065
GLY 2150.0068
CYS 2160.0058
PHE 2170.0063
HIS 2180.0070
ALA 2190.0064
ILE 2200.0065
GLY 2210.0072
ARG 2220.0076
LEU 2230.0071
PHE 2240.0078
GLY 2250.0071
LEU 2260.0062
PHE 2270.0054
LEU 2280.0044
ASN 2290.0041
ASN 2300.0030
VAL 2310.0031
GLN 2320.0027
LEU 2330.0036
GLY 2340.0038
PRO 2350.0047
SER 2360.0052
LEU 2370.0050
THR 2380.0052
GLU 2390.0062
LYS 2400.0064
LEU 2410.0060
CYS 2420.0069
LEU 2430.0076
GLU 2440.0072
LEU 2450.0075
ALA 2460.0085
ASN 2470.0096
THR 2480.0090
SER 2490.0093
ILE 2500.0083
ARG 2510.0090
ASN 2520.0080
LEU 2530.0068
SER 2540.0059
LEU 2550.0048
SER 2560.0042
ASN 2570.0029
SER 2580.0029
GLN 2590.0020
LEU 2600.0029
SER 2610.0020
THR 2620.0032
THR 2630.0043
SER 2640.0056
ASN 2650.0069
THR 2660.0072
THR 2670.0062
PHE 2680.0069
LEU 2690.0081
GLY 2700.0085
LEU 2710.0084
LYS 2720.0096
TRP 2730.0103
THR 2740.0098
ASN 2750.0103
LEU 2760.0093
THR 2770.0094
MET 2780.0083
LEU 2790.0069
ASP 2800.0059
LEU 2810.0046
SER 2820.0042
TYR 2830.0032
ASN 2840.0019
ASN 2850.0007
LEU 2860.0012
ASN 2870.0011
VAL 2880.0026
VAL 2890.0035
GLY 2900.0049
ASN 2910.0058
ASP 2920.0069
SER 2930.0062
PHE 2940.0067
ALA 2950.0080
TRP 2960.0087
LEU 2970.0087
PRO 2980.0099
GLN 2990.0102
LEU 3000.0089
GLU 3010.0092
TYR 3020.0083
PHE 3030.0068
PHE 3040.0059
LEU 3050.0043
GLU 3060.0046
TYR 3070.0040
ASN 3080.0023
ASN 3090.0014
ILE 3100.0008
GLN 3110.0014
HIS 3120.0020
LEU 3130.0024
PHE 3140.0037
SER 3150.0047
HIS 3160.0056
SER 3170.0047
LEU 3180.0054
HIS 3190.0068
GLY 3200.0081
LEU 3210.0077
PHE 3220.0088
ASN 3230.0095
VAL 3240.0083
ARG 3250.0088
TYR 3260.0080
LEU 3270.0064
ASN 3280.0059
LEU 3290.0045
LYS 3300.0051
ARG 3310.0043
SER 3320.0031
PHE 3330.0020
THR 3340.0025
LYS 3350.0040
GLN 3360.0048
SER 3370.0060
ILE 3380.0069
SER 3390.0080
LEU 3400.0072
ALA 3410.0057
SER 3420.0044
LEU 3430.0032
PRO 3440.0017
LYS 3450.0020
ILE 3460.0016
ASP 3470.0026
ASP 3480.0031
PHE 3490.0041
SER 3500.0039
PHE 3510.0046
GLN 3520.0058
TRP 3530.0066
LEU 3540.0067
LYS 3550.0079
CYS 3560.0085
LEU 3570.0074
GLU 3580.0080
HIS 3590.0075
LEU 3600.0060
ASN 3610.0061
MET 3620.0049
GLU 3630.0056
ASP 3640.0055
ASN 3650.0043
ASP 3660.0037
ILE 3670.0028
PRO 3680.0027
GLY 3690.0023
ILE 3700.0022
LYS 3710.0012
SER 3720.0018
ASN 3730.0027
MET 3740.0026
PHE 3750.0037
THR 3760.0042
GLY 3770.0054
LEU 3780.0056
ILE 3790.0066
ASN 3800.0073
LEU 3810.0063
LYS 3820.0069
TYR 3830.0068
LEU 3840.0057
SER 3850.0059
LEU 3860.0052
SER 3870.0061
ASN 3880.0060
SER 3890.0050
PHE 3900.0044
THR 3910.0050
SER 3920.0047
LEU 3930.0041
ARG 3940.0042
THR 3950.0037
LEU 3960.0035
THR 3970.0028
ASN 3980.0022
GLU 3990.0022
THR 4000.0028
PHE 4010.0027
VAL 4020.0023
SER 4030.0028
LEU 4040.0036
ALA 4050.0034
HIS 4060.0042
SER 4070.0045
PRO 4080.0054
LEU 4090.0051
HIS 4100.0059
ILE 4110.0060
LEU 4120.0054
ASN 4130.0060
LEU 4140.0056
THR 4150.0065
LYS 4160.0066
ASN 4170.0060
LYS 4180.0062
ILE 4190.0053
SER 4200.0053
LYS 4210.0045
ILE 4220.0039
GLU 4230.0034
SER 4240.0029
ASP 4250.0025
ALA 4260.0028
PHE 4270.0029
SER 4280.0023
TRP 4290.0026
LEU 4300.0032
GLY 4310.0030
HIS 4320.0038
LEU 4330.0040
GLU 4340.0048
VAL 4350.0052
LEU 4360.0050
ASP 4370.0058
LEU 4380.0057
GLY 4390.0066
LEU 4400.0075
ASN 4410.0072
GLU 4420.0073
ILE 4430.0062
GLY 4440.0064
GLN 4450.0056
GLU 4460.0058
LEU 4470.0045
THR 4480.0042
GLY 4490.0029
GLN 4500.0028
GLU 4510.0032
TRP 4520.0026
ARG 4530.0020
GLY 4540.0018
LEU 4550.0023
GLU 4560.0023
ASN 4570.0030
ILE 4580.0033
PHE 4590.0037
GLU 4600.0042
ILE 4610.0043
TYR 4620.0054
LEU 4630.0056
SER 4640.0065
TYR 4650.0077
ASN 4660.0072
LYS 4670.0080
TYR 4680.0073
LEU 4690.0059
GLN 4700.0058
LEU 4710.0051
THR 4720.0052
ARG 4730.0046
ASN 4740.0037
SER 4750.0033
PHE 4760.0021
ALA 4770.0019
LEU 4780.0012
VAL 4790.0010
PRO 4800.0011
SER 4810.0024
LEU 4820.0024
GLN 4830.0032
ARG 4840.0035
LEU 4850.0034
MET 4860.0045
LEU 4870.0049
ARG 4880.0061
ARG 4890.0075
VAL 4900.0072
ALA 4910.0077
LEU 4920.0063
LYS 4930.0069
ASN 4940.0066
VAL 4950.0052
ASP 4960.0068
SER 4970.0068
SER 4980.0075
PRO 4990.0063
SER 5000.0049
PRO 5010.0039
PHE 5020.0024
GLN 5030.0034
PRO 5040.0028
LEU 5050.0016
ARG 5060.0041
ASN 5070.0042
LEU 5080.0024
THR 5090.0035
ILE 5100.0030
LEU 5110.0022
ASP 5120.0038
LEU 5130.0043
SER 5140.0055
ASN 5150.0074
ASN 5160.0076
ASN 5170.0083
ILE 5180.0075
ALA 5190.0086
ASN 5200.0084
ILE 5210.0068
ASN 5220.0074
ASP 5230.0075
ASP 5240.0067
MET 5250.0049
LEU 5260.0043
GLU 5270.0060
GLY 5280.0060
LEU 5290.0042
GLU 5300.0059
LYS 5310.0053
LEU 5320.0033
GLU 5330.0041
ILE 5340.0031
LEU 5350.0013
ASP 5360.0029
LEU 5370.0035
GLN 5380.0049
HIS 5390.0069
ASN 5400.0071
ASN 5410.0082
LEU 5420.0070
ALA 5430.0078
ARG 5440.0098
LEU 5450.0089
TRP 5460.0081
LYS 5470.0101
HIS 5480.0118
ALA 5490.0135
ASN 5500.0128
PRO 5510.0147
GLY 5520.0143
GLY 5530.0128
PRO 5540.0102
ILE 5550.0086
TYR 5560.0074
PHE 5570.0057
LEU 5580.0046
LYS 5590.0066
GLY 5600.0069
LEU 5610.0050
SER 5620.0068
HIS 5630.0063
LEU 5640.0044
HIS 5650.0050
ILE 5660.0040
LEU 5670.0017
ASN 5680.0023
LEU 5690.0025
GLU 5700.0042
SER 5710.0062
ASN 5720.0063
GLY 5730.0074
PHE 5740.0063
ASP 5750.0074
GLU 5760.0075
ILE 5770.0066
PRO 5780.0083
VAL 5790.0088
GLU 5800.0087
VAL 5810.0061
PHE 5820.0056
LYS 5830.0079
ASP 5840.0077
LEU 5850.0061
PHE 5860.0075
GLU 5870.0073
LEU 5880.0057
LYS 5890.0064
ILE 5900.0051
ILE 5910.0025
ASP 5920.0021
LEU 5930.0015
GLY 5940.0033
LEU 5950.0054
ASN 5960.0055
ASN 5970.0065
LEU 5980.0053
ASN 5990.0059
THR 6000.0073
LEU 6010.0064
PRO 6020.0085
ALA 6030.0093
SER 6040.0092
VAL 6050.0073
PHE 6060.0064
ASN 6070.0089
ASN 6080.0087
GLN 6090.0074
VAL 6100.0095
SER 6110.0088
LEU 6120.0070
LYS 6130.0076
SER 6140.0059
LEU 6150.0037
ASN 6160.0026
LEU 6170.0009
GLN 6180.0030
LYS 6190.0046
ASN 6200.0043
LEU 6210.0053
ILE 6220.0041
THR 6230.0050
SER 6240.0059
VAL 6250.0054
GLU 6260.0074
LYS 6270.0085
LYS 6280.0093
VAL 6290.0072
PHE 6300.0063
GLY 6310.0085
PRO 6320.0088
ALA 6330.0067
PHE 6340.0073
ARG 6350.0096
ASN 6360.0099
LEU 6370.0082
THR 6380.0091
GLU 6390.0073
LEU 6400.0052
ASP 6410.0038
MET 6420.0016
ARG 6430.0029
PHE 6440.0037
ASN 6450.0028
PRO 6460.0043
PHE 6470.0035
ASP 6480.0057
CYS 6490.0056
THR 6500.0081
CYS 6510.0095
GLU 6520.0102
SER 6530.0078
ILE 6540.0064
ALA 6550.0083
TRP 6560.0080
PHE 6570.0061
VAL 6580.0065
ASN 6590.0085
TRP 6600.0078
ILE 6610.0069
ASN 6620.0088
GLU 6630.0086
THR 6640.0072
HIS 6650.0077
THR 6660.0087
ASN 6670.0084
ILE 6680.0065
PRO 6690.0070
GLU 6700.0065
LEU 6710.0053
SER 6720.0051
SER 6730.0051
HIS 6740.0040
TYR 6750.0017
LEU 6760.0011
CYS 6770.0027
ASN 6780.0049
THR 6790.0068
PRO 6800.0076
PRO 6810.0074
HIS 6820.0064
TYR 6830.0046
HIS 6840.0044
GLY 6850.0028
PHE 6860.0010
PRO 6870.0015
VAL 6880.0029
ARG 6890.0049
LEU 6900.0050
PHE 6910.0058
ASP 6920.0082
THR 6930.0100
SER 6940.0122
SER 6950.0121
CYS 6960.0124
GLU 10.0089
ALA 20.0093
ALA 30.0093
ALA 40.0072
LYS 50.0066
MET 60.0077
GLN 70.0071
ARG 80.0052
LEU 90.0059
VAL 100.0073
LEU 110.0061
LEU 120.0052
LEU 130.0070
ALA 140.0077
ILE 150.0065
SER 160.0076
LEU 170.0090
LEU 180.0088
LEU 190.0084
TYR 200.0095
GLN 210.0101
ASP 220.0099
LEU 230.0102
PRO 240.0104
VAL 250.0109
ARG 260.0111
SER 270.0112
GLU 280.0103
PHE 290.0091
GLU 300.0121
LEU 310.0161
ASP 320.0139
ARG 330.0153
ILE 340.0190
CYS 350.0201
GLY 360.0228
TYR 370.0265
GLY 380.0257
THR 390.0266
ALA 400.0221
ARG 410.0185
CYS 420.0149
ARG 430.0136
LYS 440.0107
LYS 450.0124
CYS 460.0158
ARG 470.0185
SER 480.0202
GLN 490.0223
GLU 500.0201
TYR 510.0180
ARG 520.0151
ILE 530.0166
GLY 540.0143
ARG 550.0122
CYS 560.0129
PRO 570.0124
ASN 580.0093
THR 590.0080
TYR 600.0093
ALA 610.0121
CYS 620.0154
CYS 630.0174
LEU 640.0207
ARG 650.0230
LYS 660.0265
TRP 670.0240
ASP 680.0221
GLU 690.0243
SER 700.0205
LEU 710.0170
LEU 720.0205
ASN 730.0199
ARG 740.0133
THR 750.0127
LYS 760.0145
PRO 770.0082
GLU 780.0136
ALA 790.0123
ALA 800.0053
ALA 810.0088
LYS 820.0083
LYS 830.0082
GLU 840.0088
MET 850.0087
ASN 860.0089
LEU 870.0075
SER 880.0074
VAL 890.0067
GLY 900.0067
LEU 910.0065
GLY 920.0066
GLY 930.0067
GLY 940.0077
SER 950.0078
ASN 960.0082
LEU 970.0083
SER 980.0089
VAL 990.0089
GLY 1000.0100
LEU 1010.0093
GLY 1020.0111
GLU 1030.0088
ILE 1040.0120
GLY 1050.0119
GLY 1060.0156
GLY 1070.0162
SER 1080.0153
LYS 1090.0122
LEU 1100.0131
LEU 1110.0097
ASP 1120.0114
ILE 1130.0096
ASN 1140.0117
LEU 1150.0099
GLY 1160.0095
ARG 1170.0088
GLY 1180.0084
GLY 1190.0083
GLY 1200.0084
SER 1210.0075
MET 1220.0078
VAL 1230.0067
ASP 1240.0072
LEU 1250.0067
THR 1260.0086
PHE 1270.0092
GLY 1280.0119
GLY 1290.0130
VAL 1300.0139
GLY 1310.0159
GLY 1320.0145
GLY 1330.0125
SER 1340.0109
THR 1350.0088
PHE 1360.0068
THR 1370.0056
PHE 1380.0059
PHE 1390.0067
PRO 1400.0091
LEU 1410.0109
VAL 1420.0137
ILE 1430.0142
GLY 1440.0175
GLY 1450.0180
GLY 1460.0170
SER 1470.0150
ASP 1480.0120
ALA 1490.0119
MET 1500.0101
TYR 1510.0095
LEU 1520.0077
GLY 1530.0079
PHE 1540.0073
ALA 1550.0077
ALA 1560.0094
GLY 1570.0090
GLY 1580.0091
GLY 1590.0092
SER 1600.0095
ALA 1610.0116
GLY 1620.0140
GLY 1630.0136
GLU 1640.0119
ASN 1650.0087
HIS 1660.0093
VAL 1670.0085
ALA 1680.0096
PHE 1690.0100
GLY 1700.0123
PRO 1710.0151
GLY 1720.0190
PRO 1730.0210
GLY 1740.0189
VAL 1750.0143
ASP 1760.0140
LEU 1770.0121
THR 1780.0135
PHE 1790.0130
GLY 1800.0159
GLY 1810.0192
VAL 1820.0186
GLN 1830.0182
PHE 1840.0171
ALA 1850.0193
MET 1860.0196
VAL 1870.0233
ASN 1880.0244
ASN 1890.0264
GLY 1900.0282
PRO 1910.0178
GLY 1920.0104
PRO 1930.0210
GLY 1940.0284
GLU 1950.0193
SER 1960.0218
PHE 1970.0190
THR 1980.0063
ALA 1990.0101
GLN 2000.0201
PRO 2010.0330
ALA 2020.0306
ASP 2030.0046
MET 2040.0232
GLN 2050.0192
ALA 2060.0288
GLY 2070.0339
ILE 2080.0265
LYS 2090.0315
GLY 2100.0269
PRO 2110.0208
GLY 2120.0152
PRO 2130.0108
GLY 2140.0159
GLY 2150.0199
SER 2160.0310
ILE 2170.0289
GLN 2180.0263
VAL 2190.0223
ILE 2200.0234
ASN 2210.0255
GLY 2220.0245
SER 2230.0296
THR 2240.0296
ILE 2250.0320
GLY 2260.0433
THR 2270.0474
GLY 2280.0481
SER 2290.0478
LYS 2300.0413
LYS 2310.0319
THR 2320.0251
ILE 2330.0132
LEU 2340.0062
ILE 2350.0076
TYR 2360.0131
SER 2370.0137
ILE 2380.0177
ILE 2390.0151
GLY 2400.0198
VAL 2410.0228
LYS 2420.0212
LYS 2430.0244
GLY 2440.0264
THR 2450.0237
LEU 2460.0248
ALA 2470.0192
TRP 2480.0153
ALA 2490.0096
ARG 2500.0074
THR 2510.0036
GLY 2520.0123
PHE 2530.0175
SER 2540.0269
PRO 2550.0334
ALA 2560.0445
LYS 2570.0538
LYS 2580.0482
LEU 2590.0476
ASN 2600.0462
ALA 2610.0300
GLY 2620.0256
VAL 2630.0277
VAL 2640.0184
ARG 2650.0214
VAL 2660.0220
PHE 2670.0200
PHE 2680.0225
LEU 2690.0201
ASN 2700.0212
GLN 2710.0187
LYS 2720.0186
LYS 2730.0180
ALA 2740.0175
LYS 2750.0171
ASP 2760.0182
VAL 2770.0193
LEU 2780.0243
ARG 2790.0273
LYS 2800.0256
THR 2810.0282
SER 2820.0325
ARG 2830.0267
PRO 2840.0300
MET 2850.0334
VAL 2860.0214
ASP 2870.0214
LEU 2880.0243
THR 2890.0260
PHE 2900.0209
GLY 2910.0425
GLY 2920.0488

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Last modification: april 24th, 2026.