CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 29  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0361
THR 260.0173
LYS 270.0146
CYS 280.0114
THR 290.0096
VAL 300.0068
SER 310.0051
HIS 320.0021
GLU 330.0028
VAL 340.0035
ALA 350.0064
ASP 360.0084
CYS 370.0107
SER 380.0118
HIS 390.0148
LEU 400.0155
LYS 410.0163
LEU 420.0150
THR 430.0154
GLN 440.0145
VAL 450.0123
PRO 460.0133
ASP 470.0142
ASP 480.0144
LEU 490.0113
PRO 500.0103
THR 510.0102
ASN 520.0079
ILE 530.0058
THR 540.0036
VAL 550.0024
LEU 560.0054
ASN 570.0068
LEU 580.0090
THR 590.0100
HIS 600.0128
ASN 610.0130
GLN 620.0138
LEU 630.0117
ARG 640.0115
ARG 650.0098
LEU 660.0090
PRO 670.0105
ALA 680.0100
ALA 690.0125
ASN 700.0119
PHE 710.0099
THR 720.0118
ARG 730.0119
TYR 740.0091
SER 750.0090
GLN 760.0072
LEU 770.0050
THR 780.0032
SER 790.0017
LEU 800.0035
ASP 810.0050
VAL 820.0066
GLY 830.0075
PHE 840.0098
ASN 850.0102
THR 860.0097
ILE 870.0078
SER 880.0067
LYS 890.0056
LEU 900.0048
GLU 910.0060
PRO 920.0052
GLU 930.0073
LEU 940.0066
CYS 950.0054
GLN 960.0078
LYS 970.0085
LEU 980.0066
PRO 990.0071
MET 1000.0057
LEU 1010.0036
LYS 1020.0026
VAL 1030.0011
LEU 1040.0016
ASN 1050.0032
LEU 1060.0039
GLN 1070.0056
HIS 1080.0074
ASN 1090.0068
GLU 1100.0064
LEU 1110.0038
SER 1120.0043
GLN 1130.0034
LEU 1140.0027
SER 1150.0027
ASP 1160.0034
LYS 1170.0027
THR 1180.0016
PHE 1190.0024
ALA 1200.0041
PHE 1210.0049
CYS 1220.0038
THR 1230.0051
ASN 1240.0047
LEU 1250.0030
THR 1260.0032
GLU 1270.0021
LEU 1280.0021
HIS 1290.0029
LEU 1300.0037
MET 1310.0053
SER 1320.0065
ASN 1330.0052
SER 1340.0063
ILE 1350.0055
GLN 1360.0074
LYS 1370.0075
ILE 1380.0068
LYS 1390.0074
ASN 1400.0076
ASN 1410.0065
PRO 1420.0047
PHE 1430.0050
VAL 1440.0064
LYS 1450.0058
GLN 1460.0047
LYS 1470.0060
ASN 1480.0053
LEU 1490.0042
ILE 1500.0042
THR 1510.0033
LEU 1520.0038
ASP 1530.0040
LEU 1540.0052
SER 1550.0060
HIS 1560.0069
ASN 1570.0070
GLY 1580.0082
LEU 1590.0082
SER 1600.0098
SER 1610.0095
THR 1620.0084
LYS 1630.0089
LEU 1640.0076
GLY 1650.0086
THR 1660.0097
GLN 1670.0097
VAL 1680.0093
GLN 1690.0078
LEU 1700.0065
GLU 1710.0073
ASN 1720.0062
LEU 1730.0053
GLN 1740.0049
GLU 1750.0041
LEU 1760.0049
LEU 1770.0049
LEU 1780.0063
SER 1790.0066
ASN 1800.0076
ASN 1810.0081
LYS 1820.0095
ILE 1830.0095
GLN 1840.0108
ALA 1850.0109
LEU 1860.0098
LYS 1870.0109
SER 1880.0110
GLU 1890.0117
GLU 1900.0103
LEU 1910.0092
ASP 1920.0102
ILE 1930.0092
PHE 1940.0082
ALA 1950.0095
ASN 1960.0088
SER 1970.0073
SER 1980.0065
LEU 1990.0055
LYS 2000.0044
LYS 2010.0039
LEU 2020.0051
GLU 2030.0051
LEU 2040.0065
SER 2050.0063
SER 2060.0075
ASN 2070.0084
GLN 2080.0094
ILE 2090.0092
LYS 2100.0102
GLU 2110.0103
PHE 2120.0094
SER 2130.0108
PRO 2140.0109
GLY 2150.0104
CYS 2160.0095
PHE 2170.0081
HIS 2180.0091
ALA 2190.0095
ILE 2200.0081
GLY 2210.0083
ARG 2220.0070
LEU 2230.0058
PHE 2240.0045
GLY 2250.0036
LEU 2260.0041
PHE 2270.0042
LEU 2280.0051
ASN 2290.0052
ASN 2300.0066
VAL 2310.0068
GLN 2320.0070
LEU 2330.0060
GLY 2340.0053
PRO 2350.0041
SER 2360.0059
LEU 2370.0063
THR 2380.0047
GLU 2390.0047
LYS 2400.0061
LEU 2410.0059
CYS 2420.0047
LEU 2430.0060
GLU 2440.0069
LEU 2450.0056
ALA 2460.0059
ASN 2470.0067
THR 2480.0062
SER 2490.0056
ILE 2500.0044
ARG 2510.0029
ASN 2520.0022
LEU 2530.0025
SER 2540.0030
LEU 2550.0037
SER 2560.0044
ASN 2570.0057
SER 2580.0052
GLN 2590.0056
LEU 2600.0042
SER 2610.0053
THR 2620.0045
THR 2630.0035
SER 2640.0029
ASN 2650.0024
THR 2660.0021
THR 2670.0025
PHE 2680.0021
LEU 2690.0026
GLY 2700.0035
LEU 2710.0030
LYS 2720.0036
TRP 2730.0046
THR 2740.0040
ASN 2750.0038
LEU 2760.0022
THR 2770.0022
MET 2780.0019
LEU 2790.0021
ASP 2800.0029
LEU 2810.0036
SER 2820.0048
TYR 2830.0059
ASN 2840.0054
ASN 2850.0065
LEU 2860.0059
ASN 2870.0066
VAL 2880.0061
VAL 2890.0053
GLY 2900.0050
ASN 2910.0052
ASP 2920.0043
SER 2930.0034
PHE 2940.0030
ALA 2950.0035
TRP 2960.0024
LEU 2970.0024
PRO 2980.0037
GLN 2990.0033
LEU 3000.0026
GLU 3010.0032
TYR 3020.0031
PHE 3030.0036
PHE 3040.0042
LEU 3050.0050
GLU 3060.0056
TYR 3070.0066
ASN 3080.0066
ASN 3090.0074
ILE 3100.0071
GLN 3110.0085
HIS 3120.0084
LEU 3130.0077
PHE 3140.0077
SER 3150.0078
HIS 3160.0066
SER 3170.0059
LEU 3180.0055
HIS 3190.0055
GLY 3200.0048
LEU 3210.0044
PHE 3220.0050
ASN 3230.0042
VAL 3240.0041
ARG 3250.0044
TYR 3260.0046
LEU 3270.0053
ASN 3280.0056
LEU 3290.0063
LYS 3300.0067
ARG 3310.0072
SER 3320.0067
PHE 3330.0078
THR 3340.0087
LYS 3350.0095
GLN 3360.0110
SER 3370.0120
ILE 3380.0134
SER 3390.0144
LEU 3400.0134
ALA 3410.0125
SER 3420.0114
LEU 3430.0108
PRO 3440.0096
LYS 3450.0097
ILE 3460.0090
ASP 3470.0092
ASP 3480.0093
PHE 3490.0086
SER 3500.0079
PHE 3510.0072
GLN 3520.0074
TRP 3530.0064
LEU 3540.0059
LYS 3550.0061
CYS 3560.0055
LEU 3570.0056
GLU 3580.0056
HIS 3590.0056
LEU 3600.0063
ASN 3610.0065
MET 3620.0073
GLU 3630.0074
ASP 3640.0080
ASN 3650.0085
ASP 3660.0093
ILE 3670.0093
PRO 3680.0099
GLY 3690.0096
ILE 3700.0091
LYS 3710.0097
SER 3720.0096
ASN 3730.0093
MET 3740.0088
PHE 3750.0081
THR 3760.0080
GLY 3770.0075
LEU 3780.0068
ILE 3790.0066
ASN 3800.0058
LEU 3810.0066
LYS 3820.0061
TYR 3830.0061
LEU 3840.0067
SER 3850.0068
LEU 3860.0077
SER 3870.0076
ASN 3880.0084
SER 3890.0087
PHE 3900.0090
THR 3910.0092
SER 3920.0084
LEU 3930.0076
ARG 3940.0070
THR 3950.0064
LEU 3960.0061
THR 3970.0060
ASN 3980.0056
GLU 3990.0068
THR 4000.0070
PHE 4010.0070
VAL 4020.0074
SER 4030.0079
LEU 4040.0072
ALA 4050.0069
HIS 4060.0068
SER 4070.0066
PRO 4080.0062
LEU 4090.0061
HIS 4100.0057
ILE 4110.0059
LEU 4120.0062
ASN 4130.0064
LEU 4140.0066
THR 4150.0068
LYS 4160.0078
ASN 4170.0079
LYS 4180.0077
ILE 4190.0063
SER 4200.0058
LYS 4210.0052
ILE 4220.0044
GLU 4230.0040
SER 4240.0033
ASP 4250.0036
ALA 4260.0048
PHE 4270.0046
SER 4280.0046
TRP 4290.0056
LEU 4300.0053
GLY 4310.0052
HIS 4320.0057
LEU 4330.0051
GLU 4340.0049
VAL 4350.0046
LEU 4360.0045
ASP 4370.0050
LEU 4380.0048
GLY 4390.0056
LEU 4400.0072
ASN 4410.0074
GLU 4420.0076
ILE 4430.0060
GLY 4440.0065
GLN 4450.0054
GLU 4460.0068
LEU 4470.0052
THR 4480.0053
GLY 4490.0044
GLN 4500.0036
GLU 4510.0028
TRP 4520.0029
ARG 4530.0035
GLY 4540.0046
LEU 4550.0042
GLU 4560.0055
ASN 4570.0058
ILE 4580.0046
PHE 4590.0048
GLU 4600.0036
ILE 4610.0029
TYR 4620.0036
LEU 4630.0040
SER 4640.0055
TYR 4650.0076
ASN 4660.0075
LYS 4670.0090
TYR 4680.0085
LEU 4690.0071
GLN 4700.0080
LEU 4710.0081
THR 4720.0091
ARG 4730.0100
ASN 4740.0082
SER 4750.0061
PHE 4760.0053
ALA 4770.0068
LEU 4780.0058
VAL 4790.0053
PRO 4800.0070
SER 4810.0069
LEU 4820.0050
GLN 4830.0051
ARG 4840.0031
LEU 4850.0022
MET 4860.0028
LEU 4870.0046
ARG 4880.0061
ARG 4890.0085
VAL 4900.0081
ALA 4910.0105
LEU 4920.0094
LYS 4930.0110
ASN 4940.0116
VAL 4950.0104
ASP 4960.0136
SER 4970.0137
SER 4980.0155
PRO 4990.0142
SER 5000.0118
PRO 5010.0091
PHE 5020.0080
GLN 5030.0102
PRO 5040.0095
LEU 5050.0077
ARG 5060.0090
ASN 5070.0079
LEU 5080.0060
THR 5090.0055
ILE 5100.0032
LEU 5110.0028
ASP 5120.0031
LEU 5130.0058
SER 5140.0071
ASN 5150.0100
ASN 5160.0114
ASN 5170.0136
ILE 5180.0133
ALA 5190.0158
ASN 5200.0162
ILE 5210.0139
ASN 5220.0155
ASP 5230.0160
ASP 5240.0150
MET 5250.0120
LEU 5260.0102
GLU 5270.0127
GLY 5280.0127
LEU 5290.0100
GLU 5300.0114
LYS 5310.0097
LEU 5320.0072
GLU 5330.0064
ILE 5340.0034
LEU 5350.0032
ASP 5360.0031
LEU 5370.0065
GLN 5380.0076
HIS 5390.0111
ASN 5400.0126
ASN 5410.0156
LEU 5420.0145
ALA 5430.0159
ARG 5440.0194
LEU 5450.0182
TRP 5460.0170
LYS 5470.0201
HIS 5480.0229
ALA 5490.0260
ASN 5500.0252
PRO 5510.0289
GLY 5520.0285
GLY 5530.0256
PRO 5540.0210
ILE 5550.0183
TYR 5560.0163
PHE 5570.0138
LEU 5580.0117
LYS 5590.0148
GLY 5600.0151
LEU 5610.0112
SER 5620.0131
HIS 5630.0111
LEU 5640.0082
HIS 5650.0076
ILE 5660.0045
LEU 5670.0030
ASN 5680.0024
LEU 5690.0058
GLU 5700.0072
SER 5710.0112
ASN 5720.0123
GLY 5730.0143
PHE 5740.0129
ASP 5750.0146
GLU 5760.0149
ILE 5770.0135
PRO 5780.0168
VAL 5790.0172
GLU 5800.0178
VAL 5810.0135
PHE 5820.0120
LYS 5830.0158
ASP 5840.0155
LEU 5850.0121
PHE 5860.0134
GLU 5870.0121
LEU 5880.0094
LYS 5890.0094
ILE 5900.0067
ILE 5910.0034
ASP 5920.0014
LEU 5930.0040
GLY 5940.0058
LEU 5950.0098
ASN 5960.0106
ASN 5970.0122
LEU 5980.0098
ASN 5990.0096
THR 6000.0119
LEU 6010.0114
PRO 6020.0152
ALA 6030.0165
SER 6040.0168
VAL 6050.0139
PHE 6060.0122
ASN 6070.0161
ASN 6080.0158
GLN 6090.0130
VAL 6100.0161
SER 6110.0144
LEU 6120.0113
LYS 6130.0116
SER 6140.0085
LEU 6150.0055
ASN 6160.0033
LEU 6170.0023
GLN 6180.0062
LYS 6190.0090
ASN 6200.0079
LEU 6210.0086
ILE 6220.0051
THR 6230.0046
SER 6240.0062
VAL 6250.0069
GLU 6260.0108
LYS 6270.0138
LYS 6280.0156
VAL 6290.0124
PHE 6300.0107
GLY 6310.0144
PRO 6320.0155
ALA 6330.0118
PHE 6340.0126
ARG 6350.0166
ASN 6360.0165
LEU 6370.0136
THR 6380.0148
GLU 6390.0120
LEU 6400.0091
ASP 6410.0075
MET 6420.0050
ARG 6430.0084
PHE 6440.0095
ASN 6450.0060
PRO 6460.0065
PHE 6470.0027
ASP 6480.0023
CYS 6490.0040
THR 6500.0067
CYS 6510.0111
GLU 6520.0118
SER 6530.0080
ILE 6540.0079
ALA 6550.0124
TRP 6560.0130
PHE 6570.0105
VAL 6580.0125
ASN 6590.0157
TRP 6600.0148
ILE 6610.0146
ASN 6620.0176
GLU 6630.0174
THR 6640.0151
HIS 6650.0152
THR 6660.0163
ASN 6670.0161
ILE 6680.0139
PRO 6690.0153
GLU 6700.0163
LEU 6710.0151
SER 6720.0170
SER 6730.0171
HIS 6740.0134
TYR 6750.0101
LEU 6760.0098
CYS 6770.0064
ASN 6780.0069
THR 6790.0048
PRO 6800.0031
PRO 6810.0062
HIS 6820.0061
TYR 6830.0069
HIS 6840.0090
GLY 6850.0124
PHE 6860.0119
PRO 6870.0125
VAL 6880.0100
ARG 6890.0140
LEU 6900.0154
PHE 6910.0130
ASP 6920.0158
THR 6930.0170
SER 6940.0209
SER 6950.0181
CYS 6960.0177
GLU 10.0109
ALA 20.0110
ALA 30.0119
ALA 40.0109
LYS 50.0100
MET 60.0108
GLN 70.0111
ARG 80.0097
LEU 90.0097
VAL 100.0108
LEU 110.0098
LEU 120.0087
LEU 130.0096
ALA 140.0101
ILE 150.0088
SER 160.0088
LEU 170.0088
LEU 180.0076
LEU 190.0068
TYR 200.0073
GLN 210.0057
ASP 220.0041
LEU 230.0036
PRO 240.0035
VAL 250.0054
ARG 260.0095
SER 270.0098
GLU 280.0110
PHE 290.0174
GLU 300.0177
LEU 310.0155
ASP 320.0139
ARG 330.0169
ILE 340.0172
CYS 350.0155
GLY 360.0145
TYR 370.0176
GLY 380.0191
THR 390.0178
ALA 400.0154
ARG 410.0155
CYS 420.0149
ARG 430.0147
LYS 440.0149
LYS 450.0129
CYS 460.0113
ARG 470.0116
SER 480.0095
GLN 490.0092
GLU 500.0093
TYR 510.0077
ARG 520.0077
ILE 530.0079
GLY 540.0082
ARG 550.0095
CYS 560.0120
PRO 570.0129
ASN 580.0139
THR 590.0120
TYR 600.0123
ALA 610.0113
CYS 620.0115
CYS 630.0112
LEU 640.0110
ARG 650.0110
LYS 660.0106
TRP 670.0090
ASP 680.0086
GLU 690.0081
SER 700.0076
LEU 710.0067
LEU 720.0044
ASN 730.0039
ARG 740.0055
THR 750.0040
LYS 760.0064
PRO 770.0120
GLU 780.0141
ALA 790.0191
ALA 800.0204
ALA 810.0218
LYS 820.0210
LYS 830.0181
GLU 840.0169
MET 850.0144
ASN 860.0151
LEU 870.0128
SER 880.0143
VAL 890.0133
GLY 900.0146
LEU 910.0166
GLY 920.0183
GLY 930.0228
GLY 940.0233
SER 950.0221
ASN 960.0189
LEU 970.0173
SER 980.0172
VAL 990.0150
GLY 1000.0160
LEU 1010.0159
GLY 1020.0221
GLU 1030.0262
ILE 1040.0304
GLY 1050.0354
GLY 1060.0351
GLY 1070.0282
SER 1080.0215
LYS 1090.0162
LEU 1100.0097
LEU 1110.0082
ASP 1120.0096
ILE 1130.0114
ASN 1140.0136
LEU 1150.0147
GLY 1160.0208
ARG 1170.0237
GLY 1180.0237
GLY 1190.0202
GLY 1200.0153
SER 1210.0134
MET 1220.0098
VAL 1230.0090
ASP 1240.0079
LEU 1250.0069
THR 1260.0090
PHE 1270.0076
GLY 1280.0103
GLY 1290.0109
VAL 1300.0099
GLY 1310.0159
GLY 1320.0160
GLY 1330.0154
SER 1340.0122
THR 1350.0101
PHE 1360.0066
THR 1370.0070
PHE 1380.0050
PHE 1390.0064
PRO 1400.0056
LEU 1410.0081
VAL 1420.0097
ILE 1430.0118
GLY 1440.0154
GLY 1450.0172
GLY 1460.0210
SER 1470.0179
ASP 1480.0152
ALA 1490.0116
MET 1500.0082
TYR 1510.0071
LEU 1520.0045
GLY 1530.0059
PHE 1540.0056
ALA 1550.0084
ALA 1560.0127
GLY 1570.0121
GLY 1580.0138
GLY 1590.0135
SER 1600.0142
ALA 1610.0153
GLY 1620.0128
GLY 1630.0117
GLU 1640.0091
ASN 1650.0071
HIS 1660.0064
VAL 1670.0034
ALA 1680.0039
PHE 1690.0049
GLY 1700.0057
PRO 1710.0074
GLY 1720.0068
PRO 1730.0079
GLY 1740.0058
VAL 1750.0038
ASP 1760.0025
LEU 1770.0042
THR 1780.0068
PHE 1790.0093
GLY 1800.0126
GLY 1810.0131
VAL 1820.0119
GLN 1830.0081
PHE 1840.0075
ALA 1850.0056
MET 1860.0085
VAL 1870.0094
ASN 1880.0101
ASN 1890.0115
GLY 1900.0120
PRO 1910.0055
GLY 1920.0208
PRO 1930.0324
GLY 1940.0312
GLU 1950.0162
SER 1960.0066
PHE 1970.0116
THR 1980.0181
ALA 1990.0137
GLN 2000.0275
PRO 2010.0174
ALA 2020.0231
ASP 2030.0230
MET 2040.0155
GLN 2050.0142
ALA 2060.0348
GLY 2070.0354
ILE 2080.0232
LYS 2090.0226
GLY 2100.0153
PRO 2110.0082
GLY 2120.0081
PRO 2130.0095
GLY 2140.0058
GLY 2150.0041
SER 2160.0155
ILE 2170.0145
GLN 2180.0117
VAL 2190.0105
ILE 2200.0101
ASN 2210.0166
GLY 2220.0174
SER 2230.0225
THR 2240.0240
ILE 2250.0293
GLY 2260.0320
THR 2270.0332
GLY 2280.0290
SER 2290.0311
LYS 2300.0267
LYS 2310.0285
THR 2320.0238
ILE 2330.0230
LEU 2340.0193
ILE 2350.0177
TYR 2360.0189
SER 2370.0135
ILE 2380.0148
ILE 2390.0128
GLY 2400.0150
VAL 2410.0204
LYS 2420.0245
LYS 2430.0259
GLY 2440.0322
THR 2450.0339
LEU 2460.0307
ALA 2470.0262
TRP 2480.0229
ALA 2490.0163
ARG 2500.0129
THR 2510.0047
GLY 2520.0034
PHE 2530.0094
SER 2540.0131
PRO 2550.0200
ALA 2560.0273
LYS 2570.0361
LYS 2580.0342
LEU 2590.0271
ASN 2600.0284
ALA 2610.0172
GLY 2620.0142
VAL 2630.0095
VAL 2640.0099
ARG 2650.0073
VAL 2660.0090
PHE 2670.0053
PHE 2680.0040
LEU 2690.0026
ASN 2700.0061
GLN 2710.0071
LYS 2720.0073
LYS 2730.0064
ALA 2740.0067
LYS 2750.0082
ASP 2760.0078
VAL 2770.0092
LEU 2780.0105
ARG 2790.0110
LYS 2800.0110
THR 2810.0140
SER 2820.0164
ARG 2830.0138
PRO 2840.0156
MET 2850.0174
VAL 2860.0141
ASP 2870.0130
LEU 2880.0140
THR 2890.0136
PHE 2900.0129
GLY 2910.0215
GLY 2920.0234

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.