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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 38  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0667
THR 260.0044
LYS 270.0043
CYS 280.0037
THR 290.0036
VAL 300.0045
SER 310.0047
HIS 320.0055
GLU 330.0054
VAL 340.0044
ALA 350.0039
ASP 360.0030
CYS 370.0027
SER 380.0017
HIS 390.0018
LEU 400.0027
LYS 410.0028
LEU 420.0029
THR 430.0029
GLN 440.0030
VAL 450.0029
PRO 460.0039
ASP 470.0045
ASP 480.0053
LEU 490.0049
PRO 500.0055
THR 510.0053
ASN 520.0056
ILE 530.0048
THR 540.0044
VAL 550.0037
LEU 560.0031
ASN 570.0025
LEU 580.0021
THR 590.0015
HIS 600.0016
ASN 610.0022
GLN 620.0024
LEU 630.0019
ARG 640.0019
ARG 650.0014
LEU 660.0013
PRO 670.0015
ALA 680.0011
ALA 690.0020
ASN 700.0026
PHE 710.0024
THR 720.0028
ARG 730.0037
TYR 740.0035
SER 750.0034
GLN 760.0038
LEU 770.0031
THR 780.0034
SER 790.0028
LEU 800.0018
ASP 810.0015
VAL 820.0012
GLY 830.0010
PHE 840.0013
ASN 850.0016
THR 860.0020
ILE 870.0015
SER 880.0018
LYS 890.0016
LEU 900.0010
GLU 910.0011
PRO 920.0015
GLU 930.0010
LEU 940.0007
CYS 950.0016
GLN 960.0015
LYS 970.0014
LEU 980.0019
PRO 990.0026
MET 1000.0031
LEU 1010.0024
LYS 1020.0029
VAL 1030.0023
LEU 1040.0013
ASN 1050.0008
LEU 1060.0003
GLN 1070.0006
HIS 1080.0013
ASN 1090.0015
GLU 1100.0020
LEU 1110.0018
SER 1120.0025
GLN 1130.0029
LEU 1140.0027
SER 1150.0034
ASP 1160.0039
LYS 1170.0035
THR 1180.0026
PHE 1190.0026
ALA 1200.0035
PHE 1210.0032
CYS 1220.0029
THR 1230.0037
ASN 1240.0037
LEU 1250.0030
THR 1260.0031
GLU 1270.0023
LEU 1280.0016
HIS 1290.0008
LEU 1300.0005
MET 1310.0006
SER 1320.0014
ASN 1330.0015
SER 1340.0022
ILE 1350.0022
GLN 1360.0030
LYS 1370.0032
ILE 1380.0031
LYS 1390.0039
ASN 1400.0044
ASN 1410.0041
PRO 1420.0034
PHE 1430.0032
VAL 1440.0042
LYS 1450.0042
GLN 1460.0037
LYS 1470.0045
ASN 1480.0043
LEU 1490.0033
ILE 1500.0033
THR 1510.0024
LEU 1520.0017
ASP 1530.0008
LEU 1540.0004
SER 1550.0005
HIS 1560.0014
ASN 1570.0016
GLY 1580.0023
LEU 1590.0020
SER 1600.0024
SER 1610.0022
THR 1620.0016
LYS 1630.0025
LEU 1640.0026
GLY 1650.0036
THR 1660.0045
GLN 1670.0047
VAL 1680.0045
GLN 1690.0041
LEU 1700.0035
GLU 1710.0041
ASN 1720.0041
LEU 1730.0031
GLN 1740.0030
GLU 1750.0023
LEU 1760.0014
LEU 1770.0009
LEU 1780.0003
SER 1790.0011
ASN 1800.0018
ASN 1810.0016
LYS 1820.0022
ILE 1830.0018
GLN 1840.0023
ALA 1850.0019
LEU 1860.0014
LYS 1870.0017
SER 1880.0017
GLU 1890.0026
GLU 1900.0022
LEU 1910.0019
ASP 1920.0027
ILE 1930.0030
PHE 1940.0027
ALA 1950.0031
ASN 1960.0037
SER 1970.0031
SER 1980.0031
LEU 1990.0023
LYS 2000.0029
LYS 2010.0021
LEU 2020.0014
GLU 2030.0015
LEU 2040.0012
SER 2050.0020
SER 2060.0022
ASN 2070.0019
GLN 2080.0024
ILE 2090.0019
LYS 2100.0024
GLU 2110.0021
PHE 2120.0014
SER 2130.0014
PRO 2140.0011
GLY 2150.0005
CYS 2160.0007
PHE 2170.0005
HIS 2180.0008
ALA 2190.0014
ILE 2200.0017
GLY 2210.0020
ARG 2220.0020
LEU 2230.0017
PHE 2240.0025
GLY 2250.0025
LEU 2260.0021
PHE 2270.0023
LEU 2280.0024
ASN 2290.0029
ASN 2300.0031
VAL 2310.0026
GLN 2320.0028
LEU 2330.0028
GLY 2340.0030
PRO 2350.0030
SER 2360.0030
LEU 2370.0026
THR 2380.0027
GLU 2390.0028
LYS 2400.0023
LEU 2410.0023
CYS 2420.0026
LEU 2430.0022
GLU 2440.0016
LEU 2450.0020
ALA 2460.0021
ASN 2470.0020
THR 2480.0019
SER 2490.0023
ILE 2500.0024
ARG 2510.0031
ASN 2520.0031
LEU 2530.0030
SER 2540.0031
LEU 2550.0032
SER 2560.0033
ASN 2570.0033
SER 2580.0033
GLN 2590.0034
LEU 2600.0034
SER 2610.0033
THR 2620.0033
THR 2630.0033
SER 2640.0034
ASN 2650.0034
THR 2660.0036
THR 2670.0034
PHE 2680.0034
LEU 2690.0035
GLY 2700.0034
LEU 2710.0033
LYS 2720.0036
TRP 2730.0034
THR 2740.0033
ASN 2750.0034
LEU 2760.0036
THR 2770.0036
MET 2780.0035
LEU 2790.0035
ASP 2800.0035
LEU 2810.0036
SER 2820.0034
TYR 2830.0034
ASN 2840.0035
ASN 2850.0032
LEU 2860.0034
ASN 2870.0031
VAL 2880.0031
VAL 2890.0030
GLY 2900.0031
ASN 2910.0030
ASP 2920.0032
SER 2930.0034
PHE 2940.0034
ALA 2950.0034
TRP 2960.0037
LEU 2970.0036
PRO 2980.0036
GLN 2990.0036
LEU 3000.0035
GLU 3010.0033
TYR 3020.0033
PHE 3030.0031
PHE 3040.0030
LEU 3050.0028
GLU 3060.0028
TYR 3070.0027
ASN 3080.0027
ASN 3090.0025
ILE 3100.0024
GLN 3110.0022
HIS 3120.0019
LEU 3130.0017
PHE 3140.0019
SER 3150.0015
HIS 3160.0024
SER 3170.0025
LEU 3180.0025
HIS 3190.0027
GLY 3200.0030
LEU 3210.0029
PHE 3220.0028
ASN 3230.0032
VAL 3240.0029
ARG 3250.0029
TYR 3260.0026
LEU 3270.0023
ASN 3280.0023
LEU 3290.0019
LYS 3300.0019
ARG 3310.0018
SER 3320.0020
PHE 3330.0015
THR 3340.0017
LYS 3350.0014
GLN 3360.0018
SER 3370.0031
ILE 3380.0037
SER 3390.0051
LEU 3400.0052
ALA 3410.0039
SER 3420.0033
LEU 3430.0021
PRO 3440.0014
LYS 3450.0013
ILE 3460.0009
ASP 3470.0010
ASP 3480.0007
PHE 3490.0006
SER 3500.0011
PHE 3510.0013
GLN 3520.0014
TRP 3530.0019
LEU 3540.0021
LYS 3550.0023
CYS 3560.0026
LEU 3570.0022
GLU 3580.0025
HIS 3590.0023
LEU 3600.0016
ASN 3610.0017
MET 3620.0012
GLU 3630.0013
ASP 3640.0009
ASN 3650.0005
ASP 3660.0008
ILE 3670.0009
PRO 3680.0016
GLY 3690.0018
ILE 3700.0017
LYS 3710.0014
SER 3720.0016
ASN 3730.0010
MET 3740.0008
PHE 3750.0012
THR 3760.0011
GLY 3770.0014
LEU 3780.0017
ILE 3790.0022
ASN 3800.0026
LEU 3810.0021
LYS 3820.0026
TYR 3830.0024
LEU 3840.0019
SER 3850.0018
LEU 3860.0018
SER 3870.0019
ASN 3880.0016
SER 3890.0013
PHE 3900.0016
THR 3910.0019
SER 3920.0022
LEU 3930.0024
ARG 3940.0028
THR 3950.0030
LEU 3960.0029
THR 3970.0030
ASN 3980.0031
GLU 3990.0028
THR 4000.0026
PHE 4010.0025
VAL 4020.0025
SER 4030.0020
LEU 4040.0024
ALA 4050.0028
HIS 4060.0026
SER 4070.0025
PRO 4080.0029
LEU 4090.0027
HIS 4100.0029
ILE 4110.0028
LEU 4120.0027
ASN 4130.0026
LEU 4140.0026
THR 4150.0026
LYS 4160.0025
ASN 4170.0024
LYS 4180.0027
ILE 4190.0029
SER 4200.0031
LYS 4210.0032
ILE 4220.0032
GLU 4230.0033
SER 4240.0035
ASP 4250.0035
ALA 4260.0032
PHE 4270.0032
SER 4280.0034
TRP 4290.0032
LEU 4300.0032
GLY 4310.0033
HIS 4320.0032
LEU 4330.0031
GLU 4340.0032
VAL 4350.0031
LEU 4360.0032
ASP 4370.0031
LEU 4380.0031
GLY 4390.0031
LEU 4400.0030
ASN 4410.0031
GLU 4420.0031
ILE 4430.0031
GLY 4440.0031
GLN 4450.0031
GLU 4460.0028
LEU 4470.0029
THR 4480.0030
GLY 4490.0031
GLN 4500.0035
GLU 4510.0033
TRP 4520.0033
ARG 4530.0035
GLY 4540.0035
LEU 4550.0034
GLU 4560.0028
ASN 4570.0029
ILE 4580.0029
PHE 4590.0030
GLU 4600.0031
ILE 4610.0032
TYR 4620.0033
LEU 4630.0031
SER 4640.0031
TYR 4650.0031
ASN 4660.0030
LYS 4670.0029
TYR 4680.0026
LEU 4690.0026
GLN 4700.0024
LEU 4710.0023
THR 4720.0022
ARG 4730.0021
ASN 4740.0025
SER 4750.0027
PHE 4760.0027
ALA 4770.0027
LEU 4780.0031
VAL 4790.0032
PRO 4800.0030
SER 4810.0032
LEU 4820.0032
GLN 4830.0032
ARG 4840.0033
LEU 4850.0031
MET 4860.0030
LEU 4870.0027
ARG 4880.0028
ARG 4890.0027
VAL 4900.0026
ALA 4910.0022
LEU 4920.0020
LYS 4930.0018
ASN 4940.0016
VAL 4950.0015
ASP 4960.0011
SER 4970.0012
SER 4980.0012
PRO 4990.0011
SER 5000.0013
PRO 5010.0017
PHE 5020.0020
GLN 5030.0019
PRO 5040.0022
LEU 5050.0026
ARG 5060.0028
ASN 5070.0033
LEU 5080.0031
THR 5090.0034
ILE 5100.0033
LEU 5110.0028
ASP 5120.0027
LEU 5130.0021
SER 5140.0022
ASN 5150.0020
ASN 5160.0017
ASN 5170.0010
ILE 5180.0007
ALA 5190.0008
ASN 5200.0010
ILE 5210.0014
ASN 5220.0018
ASP 5230.0026
ASP 5240.0023
MET 5250.0019
LEU 5260.0024
GLU 5270.0027
GLY 5280.0030
LEU 5290.0032
GLU 5300.0040
LYS 5310.0039
LEU 5320.0036
GLU 5330.0043
ILE 5340.0039
LEU 5350.0032
ASP 5360.0029
LEU 5370.0021
GLN 5380.0020
HIS 5390.0014
ASN 5400.0008
ASN 5410.0004
LEU 5420.0012
ALA 5430.0017
ARG 5440.0023
LEU 5450.0025
TRP 5460.0030
LYS 5470.0035
HIS 5480.0046
ALA 5490.0048
ASN 5500.0042
PRO 5510.0049
GLY 5520.0052
GLY 5530.0050
PRO 5540.0041
ILE 5550.0036
TYR 5560.0039
PHE 5570.0034
LEU 5580.0039
LYS 5590.0047
GLY 5600.0053
LEU 5610.0048
SER 5620.0056
HIS 5630.0056
LEU 5640.0050
HIS 5650.0053
ILE 5660.0048
LEU 5670.0040
ASN 5680.0032
LEU 5690.0025
GLU 5700.0021
SER 5710.0010
ASN 5720.0009
GLY 5730.0009
PHE 5740.0017
ASP 5750.0022
GLU 5760.0031
ILE 5770.0036
PRO 5780.0046
VAL 5790.0054
GLU 5800.0057
VAL 5810.0048
PHE 5820.0052
LYS 5830.0061
ASP 5840.0064
LEU 5850.0060
PHE 5860.0066
GLU 5870.0065
LEU 5880.0059
LYS 5890.0060
ILE 5900.0054
ILE 5910.0047
ASP 5920.0037
LEU 5930.0028
GLY 5940.0022
LEU 5950.0013
ASN 5960.0009
ASN 5970.0014
LEU 5980.0018
ASN 5990.0020
THR 6000.0031
LEU 6010.0037
PRO 6020.0049
ALA 6030.0057
SER 6040.0063
VAL 6050.0056
PHE 6060.0059
ASN 6070.0069
ASN 6080.0072
GLN 6090.0068
VAL 6100.0077
SER 6110.0078
LEU 6120.0067
LYS 6130.0067
SER 6140.0057
LEU 6150.0047
ASN 6160.0038
LEU 6170.0025
GLN 6180.0023
LYS 6190.0017
ASN 6200.0010
LEU 6210.0018
ILE 6220.0014
THR 6230.0021
SER 6240.0020
VAL 6250.0018
GLU 6260.0031
LYS 6270.0043
LYS 6280.0054
VAL 6290.0049
PHE 6300.0046
GLY 6310.0056
PRO 6320.0068
ALA 6330.0061
PHE 6340.0058
ARG 6350.0072
ASN 6360.0075
LEU 6370.0067
THR 6380.0074
GLU 6390.0064
LEU 6400.0048
ASP 6410.0041
MET 6420.0027
ARG 6430.0033
PHE 6440.0032
ASN 6450.0022
PRO 6460.0035
PHE 6470.0031
ASP 6480.0039
CYS 6490.0044
THR 6500.0044
CYS 6510.0029
GLU 6520.0031
SER 6530.0025
ILE 6540.0016
ALA 6550.0017
TRP 6560.0022
PHE 6570.0026
VAL 6580.0035
ASN 6590.0040
TRP 6600.0047
ILE 6610.0051
ASN 6620.0059
GLU 6630.0063
THR 6640.0065
HIS 6650.0076
THR 6660.0070
ASN 6670.0073
ILE 6680.0059
PRO 6690.0066
GLU 6700.0066
LEU 6710.0065
SER 6720.0076
SER 6730.0076
HIS 6740.0057
TYR 6750.0047
LEU 6760.0058
CYS 6770.0056
ASN 6780.0064
THR 6790.0067
PRO 6800.0079
PRO 6810.0099
HIS 6820.0101
TYR 6830.0083
HIS 6840.0088
GLY 6850.0088
PHE 6860.0081
PRO 6870.0070
VAL 6880.0051
ARG 6890.0061
LEU 6900.0073
PHE 6910.0059
ASP 6920.0059
THR 6930.0041
SER 6940.0047
SER 6950.0047
CYS 6960.0028
GLU 10.0086
ALA 20.0085
ALA 30.0071
ALA 40.0060
LYS 50.0062
MET 60.0056
GLN 70.0042
ARG 80.0038
LEU 90.0047
VAL 100.0038
LEU 110.0028
LEU 120.0035
LEU 130.0038
ALA 140.0028
ILE 150.0028
SER 160.0042
LEU 170.0035
LEU 180.0031
LEU 190.0041
TYR 200.0050
GLN 210.0048
ASP 220.0052
LEU 230.0076
PRO 240.0092
VAL 250.0093
ARG 260.0099
SER 270.0096
GLU 280.0077
PHE 290.0071
GLU 300.0086
LEU 310.0081
ASP 320.0061
ARG 330.0054
ILE 340.0060
CYS 350.0052
GLY 360.0058
TYR 370.0080
GLY 380.0073
THR 390.0052
ALA 400.0034
ARG 410.0033
CYS 420.0029
ARG 430.0020
LYS 440.0017
LYS 450.0022
CYS 460.0021
ARG 470.0036
SER 480.0050
GLN 490.0036
GLU 500.0018
TYR 510.0028
ARG 520.0027
ILE 530.0036
GLY 540.0038
ARG 550.0031
CYS 560.0038
PRO 570.0049
ASN 580.0035
THR 590.0027
TYR 600.0015
ALA 610.0014
CYS 620.0021
CYS 630.0009
LEU 640.0014
ARG 650.0007
LYS 660.0020
TRP 670.0020
ASP 680.0021
GLU 690.0034
SER 700.0050
LEU 710.0036
LEU 720.0018
ASN 730.0045
ARG 740.0055
THR 750.0029
LYS 760.0085
PRO 770.0122
GLU 780.0202
ALA 790.0238
ALA 800.0177
ALA 810.0182
LYS 820.0175
LYS 830.0155
GLU 840.0139
MET 850.0124
ASN 860.0094
LEU 870.0057
SER 880.0045
VAL 890.0029
GLY 900.0047
LEU 910.0060
GLY 920.0102
GLY 930.0104
GLY 940.0108
SER 950.0064
ASN 960.0053
LEU 970.0055
SER 980.0084
VAL 990.0098
GLY 1000.0131
LEU 1010.0124
GLY 1020.0199
GLU 1030.0257
ILE 1040.0306
GLY 1050.0372
GLY 1060.0355
GLY 1070.0248
SER 1080.0138
LYS 1090.0081
LEU 1100.0088
LEU 1110.0111
ASP 1120.0142
ILE 1130.0108
ASN 1140.0144
LEU 1150.0119
GLY 1160.0122
ARG 1170.0144
GLY 1180.0092
GLY 1190.0154
GLY 1200.0183
SER 1210.0130
MET 1220.0126
VAL 1230.0087
ASP 1240.0070
LEU 1250.0042
THR 1260.0023
PHE 1270.0024
GLY 1280.0054
GLY 1290.0061
VAL 1300.0083
GLY 1310.0082
GLY 1320.0076
GLY 1330.0050
SER 1340.0047
THR 1350.0033
PHE 1360.0065
THR 1370.0092
PHE 1380.0096
PHE 1390.0126
PRO 1400.0133
LEU 1410.0149
VAL 1420.0170
ILE 1430.0190
GLY 1440.0214
GLY 1450.0235
GLY 1460.0272
SER 1470.0244
ASP 1480.0205
ALA 1490.0190
MET 1500.0155
TYR 1510.0134
LEU 1520.0115
GLY 1530.0117
PHE 1540.0099
ALA 1550.0099
ALA 1560.0088
GLY 1570.0063
GLY 1580.0055
GLY 1590.0034
SER 1600.0041
ALA 1610.0035
GLY 1620.0037
GLY 1630.0023
GLU 1640.0010
ASN 1650.0029
HIS 1660.0050
VAL 1670.0084
ALA 1680.0110
PHE 1690.0138
GLY 1700.0171
PRO 1710.0268
GLY 1720.0243
PRO 1730.0240
GLY 1740.0184
VAL 1750.0158
ASP 1760.0114
LEU 1770.0100
THR 1780.0080
PHE 1790.0069
GLY 1800.0052
GLY 1810.0078
VAL 1820.0078
GLN 1830.0083
PHE 1840.0092
ALA 1850.0098
MET 1860.0138
VAL 1870.0204
ASN 1880.0271
ASN 1890.0402
GLY 1900.0474
PRO 1910.0554
GLY 1920.0561
PRO 1930.0445
GLY 1940.0252
GLU 1950.0122
SER 1960.0631
PHE 1970.0571
THR 1980.0360
ALA 1990.0272
GLN 2000.0265
PRO 2010.0143
ALA 2020.0343
ASP 2030.0301
MET 2040.0210
GLN 2050.0199
ALA 2060.0176
GLY 2070.0162
ILE 2080.0117
LYS 2090.0108
GLY 2100.0096
PRO 2110.0075
GLY 2120.0067
PRO 2130.0047
GLY 2140.0106
GLY 2150.0141
SER 2160.0242
ILE 2170.0186
GLN 2180.0114
VAL 2190.0122
ILE 2200.0080
ASN 2210.0081
GLY 2220.0101
SER 2230.0144
THR 2240.0136
ILE 2250.0181
GLY 2260.0204
THR 2270.0205
GLY 2280.0229
SER 2290.0210
LYS 2300.0217
LYS 2310.0187
THR 2320.0234
ILE 2330.0205
LEU 2340.0255
ILE 2350.0273
TYR 2360.0310
SER 2370.0265
ILE 2380.0278
ILE 2390.0229
GLY 2400.0248
VAL 2410.0300
LYS 2420.0263
LYS 2430.0282
GLY 2440.0316
THR 2450.0306
LEU 2460.0322
ALA 2470.0294
TRP 2480.0291
ALA 2490.0257
ARG 2500.0254
THR 2510.0216
GLY 2520.0213
PHE 2530.0208
SER 2540.0238
PRO 2550.0236
ALA 2560.0301
LYS 2570.0296
LYS 2580.0162
LEU 2590.0161
ASN 2600.0140
ALA 2610.0303
GLY 2620.0203
VAL 2630.0219
VAL 2640.0147
ARG 2650.0143
VAL 2660.0099
PHE 2670.0053
PHE 2680.0126
LEU 2690.0155
ASN 2700.0250
GLN 2710.0334
LYS 2720.0479
LYS 2730.0408
ALA 2740.0305
LYS 2750.0463
ASP 2760.0462
VAL 2770.0242
LEU 2780.0262
ARG 2790.0309
LYS 2800.0172
THR 2810.0267
SER 2820.0329
ARG 2830.0256
PRO 2840.0337
MET 2850.0298
VAL 2860.0667
ASP 2870.0496
LEU 2880.0274
THR 2890.0234
PHE 2900.0264
GLY 2910.0317
GLY 2920.0667

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.