CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 39  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0646
THR 260.0231
LYS 270.0192
CYS 280.0142
THR 290.0118
VAL 300.0095
SER 310.0062
HIS 320.0065
GLU 330.0073
VAL 340.0040
ALA 350.0063
ASP 360.0080
CYS 370.0110
SER 380.0125
HIS 390.0170
LEU 400.0180
LYS 410.0164
LEU 420.0138
THR 430.0127
GLN 440.0112
VAL 450.0095
PRO 460.0125
ASP 470.0137
ASP 480.0157
LEU 490.0127
PRO 500.0131
THR 510.0124
ASN 520.0115
ILE 530.0081
THR 540.0060
VAL 550.0028
LEU 560.0038
ASN 570.0054
LEU 580.0074
THR 590.0097
HIS 600.0131
ASN 610.0125
GLN 620.0123
LEU 630.0085
ARG 640.0076
ARG 650.0039
LEU 660.0044
PRO 670.0036
ALA 680.0027
ALA 690.0059
ASN 700.0069
PHE 710.0060
THR 720.0084
ARG 730.0104
TYR 740.0079
SER 750.0085
GLN 760.0079
LEU 770.0050
THR 780.0046
SER 790.0022
LEU 800.0018
ASP 810.0043
VAL 820.0054
GLY 830.0079
PHE 840.0102
ASN 850.0093
THR 860.0102
ILE 870.0081
SER 880.0089
LYS 890.0073
LEU 900.0058
GLU 910.0047
PRO 920.0056
GLU 930.0041
LEU 940.0023
CYS 950.0044
GLN 960.0058
LYS 970.0048
LEU 980.0045
PRO 990.0069
MET 1000.0065
LEU 1010.0040
LYS 1020.0043
VAL 1030.0030
LEU 1040.0040
ASN 1050.0052
LEU 1060.0068
GLN 1070.0083
HIS 1080.0103
ASN 1090.0101
GLU 1100.0113
LEU 1110.0116
SER 1120.0138
GLN 1130.0142
LEU 1140.0128
SER 1150.0136
ASP 1160.0135
LYS 1170.0120
THR 1180.0100
PHE 1190.0090
ALA 1200.0106
PHE 1210.0085
CYS 1220.0071
THR 1230.0085
ASN 1240.0069
LEU 1250.0056
THR 1260.0047
GLU 1270.0039
LEU 1280.0056
HIS 1290.0064
LEU 1300.0087
MET 1310.0095
SER 1320.0116
ASN 1330.0119
SER 1340.0139
ILE 1350.0136
GLN 1360.0157
LYS 1370.0156
ILE 1380.0142
LYS 1390.0160
ASN 1400.0162
ASN 1410.0141
PRO 1420.0121
PHE 1430.0104
VAL 1440.0118
LYS 1450.0108
GLN 1460.0087
LYS 1470.0090
ASN 1480.0072
LEU 1490.0059
ILE 1500.0043
THR 1510.0037
LEU 1520.0057
ASP 1530.0065
LEU 1540.0087
SER 1550.0092
HIS 1560.0108
ASN 1570.0118
GLY 1580.0133
LEU 1590.0121
SER 1600.0126
SER 1610.0112
THR 1620.0091
LYS 1630.0106
LEU 1640.0104
GLY 1650.0121
THR 1660.0138
GLN 1670.0132
VAL 1680.0113
GLN 1690.0103
LEU 1700.0082
GLU 1710.0079
ASN 1720.0064
LEU 1730.0049
GLN 1740.0031
GLU 1750.0025
LEU 1760.0040
LEU 1770.0053
LEU 1780.0068
SER 1790.0076
ASN 1800.0098
ASN 1810.0105
LYS 1820.0109
ILE 1830.0089
GLN 1840.0087
ALA 1850.0069
LEU 1860.0062
LYS 1870.0064
SER 1880.0060
GLU 1890.0087
GLU 1900.0084
LEU 1910.0070
ASP 1920.0082
ILE 1930.0089
PHE 1940.0068
ALA 1950.0076
ASN 1960.0078
SER 1970.0058
SER 1980.0043
LEU 1990.0023
LYS 2000.0018
LYS 2010.0017
LEU 2020.0021
GLU 2030.0040
LEU 2040.0046
SER 2050.0063
SER 2060.0084
ASN 2070.0076
GLN 2080.0079
ILE 2090.0057
LYS 2100.0056
GLU 2110.0051
PHE 2120.0034
SER 2130.0024
PRO 2140.0014
GLY 2150.0021
CYS 2160.0027
PHE 2170.0014
HIS 2180.0024
ALA 2190.0040
ILE 2200.0037
GLY 2210.0043
ARG 2220.0033
LEU 2230.0018
PHE 2240.0030
GLY 2250.0033
LEU 2260.0036
PHE 2270.0048
LEU 2280.0057
ASN 2290.0072
ASN 2300.0083
VAL 2310.0082
GLN 2320.0095
LEU 2330.0091
GLY 2340.0107
PRO 2350.0111
SER 2360.0109
LEU 2370.0091
THR 2380.0092
GLU 2390.0096
LYS 2400.0079
LEU 2410.0069
CYS 2420.0077
LEU 2430.0071
GLU 2440.0050
LEU 2450.0053
ALA 2460.0062
ASN 2470.0058
THR 2480.0044
SER 2490.0044
ILE 2500.0045
ARG 2510.0056
ASN 2520.0055
LEU 2530.0064
SER 2540.0069
LEU 2550.0082
SER 2560.0086
ASN 2570.0098
SER 2580.0099
GLN 2590.0113
LEU 2600.0115
SER 2610.0128
THR 2620.0127
THR 2630.0121
SER 2640.0129
ASN 2650.0129
THR 2660.0126
THR 2670.0114
PHE 2680.0103
LEU 2690.0109
GLY 2700.0097
LEU 2710.0086
LYS 2720.0096
TRP 2730.0087
THR 2740.0074
ASN 2750.0068
LEU 2760.0075
THR 2770.0067
MET 2780.0065
LEU 2790.0075
ASP 2800.0077
LEU 2810.0096
SER 2820.0091
TYR 2830.0102
ASN 2840.0112
ASN 2850.0114
LEU 2860.0115
ASN 2870.0119
VAL 2880.0119
VAL 2890.0112
GLY 2900.0120
ASN 2910.0115
ASP 2920.0112
SER 2930.0112
PHE 2940.0100
ALA 2950.0105
TRP 2960.0103
LEU 2970.0089
PRO 2980.0086
GLN 2990.0076
LEU 3000.0071
GLU 3010.0062
TYR 3020.0058
PHE 3030.0066
PHE 3040.0068
LEU 3050.0076
GLU 3060.0070
TYR 3070.0087
ASN 3080.0095
ASN 3090.0100
ILE 3100.0089
GLN 3110.0095
HIS 3120.0084
LEU 3130.0073
PHE 3140.0077
SER 3150.0070
HIS 3160.0089
SER 3170.0089
LEU 3180.0077
HIS 3190.0086
GLY 3200.0089
LEU 3210.0074
PHE 3220.0071
ASN 3230.0068
VAL 3240.0056
ARG 3250.0042
TYR 3260.0039
LEU 3270.0042
ASN 3280.0045
LEU 3290.0050
LYS 3300.0055
ARG 3310.0070
SER 3320.0068
PHE 3330.0068
THR 3340.0090
LYS 3350.0103
GLN 3360.0125
SER 3370.0157
ILE 3380.0171
SER 3390.0195
LEU 3400.0175
ALA 3410.0131
SER 3420.0118
LEU 3430.0092
PRO 3440.0071
LYS 3450.0053
ILE 3460.0046
ASP 3470.0041
ASP 3480.0030
PHE 3490.0038
SER 3500.0044
PHE 3510.0037
GLN 3520.0046
TRP 3530.0061
LEU 3540.0050
LYS 3550.0057
CYS 3560.0052
LEU 3570.0037
GLU 3580.0031
HIS 3590.0022
LEU 3600.0023
ASN 3610.0028
MET 3620.0032
GLU 3630.0047
ASP 3640.0064
ASN 3650.0060
ASP 3660.0070
ILE 3670.0054
PRO 3680.0059
GLY 3690.0055
ILE 3700.0048
LYS 3710.0040
SER 3720.0046
ASN 3730.0034
MET 3740.0025
PHE 3750.0029
THR 3760.0036
GLY 3770.0047
LEU 3780.0040
ILE 3790.0057
ASN 3800.0051
LEU 3810.0039
LYS 3820.0040
TYR 3830.0031
LEU 3840.0031
SER 3850.0035
LEU 3860.0043
SER 3870.0052
ASN 3880.0061
SER 3890.0050
PHE 3900.0060
THR 3910.0074
SER 3920.0085
LEU 3930.0082
ARG 3940.0103
THR 3950.0108
LEU 3960.0097
THR 3970.0108
ASN 3980.0112
GLU 3990.0103
THR 4000.0087
PHE 4010.0073
VAL 4020.0079
SER 4030.0062
LEU 4040.0061
ALA 4050.0079
HIS 4060.0073
SER 4070.0061
PRO 4080.0063
LEU 4090.0054
HIS 4100.0053
ILE 4110.0047
LEU 4120.0053
ASN 4130.0051
LEU 4140.0061
THR 4150.0062
LYS 4160.0068
ASN 4170.0073
LYS 4180.0088
ILE 4190.0090
SER 4200.0106
LYS 4210.0109
ILE 4220.0102
GLU 4230.0115
SER 4240.0118
ASP 4250.0112
ALA 4260.0100
PHE 4270.0090
SER 4280.0100
TRP 4290.0092
LEU 4300.0080
GLY 4310.0085
HIS 4320.0074
LEU 4330.0067
GLU 4340.0060
VAL 4350.0054
LEU 4360.0060
ASP 4370.0058
LEU 4380.0068
GLY 4390.0064
LEU 4400.0069
ASN 4410.0079
GLU 4420.0090
ILE 4430.0090
GLY 4440.0098
GLN 4450.0099
GLU 4460.0093
LEU 4470.0085
THR 4480.0093
GLY 4490.0086
GLN 4500.0099
GLU 4510.0097
TRP 4520.0088
ARG 4530.0098
GLY 4540.0096
LEU 4550.0081
GLU 4560.0079
ASN 4570.0070
ILE 4580.0063
PHE 4590.0052
GLU 4600.0048
ILE 4610.0054
TYR 4620.0053
LEU 4630.0059
SER 4640.0056
TYR 4650.0066
ASN 4660.0071
LYS 4670.0082
TYR 4680.0079
LEU 4690.0070
GLN 4700.0070
LEU 4710.0056
THR 4720.0055
ARG 4730.0048
ASN 4740.0063
SER 4750.0063
PHE 4760.0059
ALA 4770.0064
LEU 4780.0076
VAL 4790.0068
PRO 4800.0061
SER 4810.0057
LEU 4820.0048
GLN 4830.0039
ARG 4840.0035
LEU 4850.0037
MET 4860.0038
LEU 4870.0040
ARG 4880.0048
ARG 4890.0060
VAL 4900.0058
ALA 4910.0061
LEU 4920.0048
LYS 4930.0048
ASN 4940.0039
VAL 4950.0024
ASP 4960.0026
SER 4970.0012
SER 4980.0006
PRO 4990.0018
SER 5000.0008
PRO 5010.0023
PHE 5020.0018
GLN 5030.0023
PRO 5040.0040
LEU 5050.0037
ARG 5060.0039
ASN 5070.0043
LEU 5080.0027
THR 5090.0021
ILE 5100.0015
LEU 5110.0012
ASP 5120.0026
LEU 5130.0030
SER 5140.0046
ASN 5150.0061
ASN 5160.0066
ASN 5170.0077
ILE 5180.0064
ALA 5190.0076
ASN 5200.0067
ILE 5210.0056
ASN 5220.0054
ASP 5230.0063
ASP 5240.0049
MET 5250.0031
LEU 5260.0028
GLU 5270.0040
GLY 5280.0044
LEU 5290.0031
GLU 5300.0044
LYS 5310.0036
LEU 5320.0021
GLU 5330.0014
ILE 5340.0009
LEU 5350.0022
ASP 5360.0034
LEU 5370.0050
GLN 5380.0063
HIS 5390.0081
ASN 5400.0082
ASN 5410.0108
LEU 5420.0098
ALA 5430.0116
ARG 5440.0130
LEU 5450.0115
TRP 5460.0119
LYS 5470.0142
HIS 5480.0156
ALA 5490.0175
ASN 5500.0163
PRO 5510.0181
GLY 5520.0170
GLY 5530.0159
PRO 5540.0131
ILE 5550.0105
TYR 5560.0093
PHE 5570.0074
LEU 5580.0066
LYS 5590.0077
GLY 5600.0072
LEU 5610.0052
SER 5620.0055
HIS 5630.0042
LEU 5640.0035
HIS 5650.0026
ILE 5660.0020
LEU 5670.0039
ASN 5680.0049
LEU 5690.0067
GLU 5700.0076
SER 5710.0097
ASN 5720.0101
GLY 5730.0116
PHE 5740.0109
ASP 5750.0122
GLU 5760.0118
ILE 5770.0103
PRO 5780.0114
VAL 5790.0109
GLU 5800.0106
VAL 5810.0088
PHE 5820.0074
LYS 5830.0085
ASP 5840.0077
LEU 5850.0059
PHE 5860.0054
GLU 5870.0043
LEU 5880.0037
LYS 5890.0023
ILE 5900.0025
ILE 5910.0040
ASP 5920.0053
LEU 5930.0069
GLY 5940.0077
LEU 5950.0098
ASN 5960.0104
ASN 5970.0109
LEU 5980.0092
ASN 5990.0086
THR 6000.0090
LEU 6010.0082
PRO 6020.0094
ALA 6030.0089
SER 6040.0085
VAL 6050.0079
PHE 6060.0057
ASN 6070.0066
ASN 6080.0066
GLN 6090.0049
VAL 6100.0050
SER 6110.0038
LEU 6120.0027
LYS 6130.0016
SER 6140.0023
LEU 6150.0030
ASN 6160.0050
LEU 6170.0057
GLN 6180.0072
LYS 6190.0091
ASN 6200.0086
LEU 6210.0083
ILE 6220.0056
THR 6230.0039
SER 6240.0031
VAL 6250.0025
GLU 6260.0036
LYS 6270.0049
LYS 6280.0066
VAL 6290.0055
PHE 6300.0034
GLY 6310.0041
PRO 6320.0047
ALA 6330.0031
PHE 6340.0026
ARG 6350.0041
ASN 6360.0036
LEU 6370.0025
THR 6380.0037
GLU 6390.0042
LEU 6400.0038
ASP 6410.0055
MET 6420.0048
ARG 6430.0075
PHE 6440.0088
ASN 6450.0065
PRO 6460.0068
PHE 6470.0039
ASP 6480.0019
CYS 6490.0042
THR 6500.0051
CYS 6510.0077
GLU 6520.0069
SER 6530.0036
ILE 6540.0041
ALA 6550.0076
TRP 6560.0062
PHE 6570.0048
VAL 6580.0072
ASN 6590.0083
TRP 6600.0065
ILE 6610.0075
ASN 6620.0093
GLU 6630.0079
THR 6640.0060
HIS 6650.0060
THR 6660.0059
ASN 6670.0072
ILE 6680.0076
PRO 6690.0099
GLU 6700.0117
LEU 6710.0104
SER 6720.0126
SER 6730.0134
HIS 6740.0111
TYR 6750.0084
LEU 6760.0095
CYS 6770.0073
ASN 6780.0073
THR 6790.0044
PRO 6800.0045
PRO 6810.0078
HIS 6820.0099
TYR 6830.0095
HIS 6840.0102
GLY 6850.0126
PHE 6860.0121
PRO 6870.0114
VAL 6880.0086
ARG 6890.0104
LEU 6900.0128
PHE 6910.0115
ASP 6920.0138
THR 6930.0132
SER 6940.0170
SER 6950.0159
CYS 6960.0140
GLU 10.0232
ALA 20.0252
ALA 30.0242
ALA 40.0199
LYS 50.0200
MET 60.0214
GLN 70.0187
ARG 80.0159
LEU 90.0184
VAL 100.0191
LEU 110.0143
LEU 120.0142
LEU 130.0172
ALA 140.0161
ILE 150.0129
SER 160.0153
LEU 170.0178
LEU 180.0151
LEU 190.0135
TYR 200.0173
GLN 210.0189
ASP 220.0158
LEU 230.0145
PRO 240.0155
VAL 250.0178
ARG 260.0136
SER 270.0161
GLU 280.0144
PHE 290.0216
GLU 300.0249
LEU 310.0232
ASP 320.0194
ARG 330.0221
ILE 340.0239
CYS 350.0222
GLY 360.0204
TYR 370.0281
GLY 380.0285
THR 390.0228
ALA 400.0180
ARG 410.0181
CYS 420.0182
ARG 430.0182
LYS 440.0192
LYS 450.0172
CYS 460.0141
ARG 470.0176
SER 480.0183
GLN 490.0146
GLU 500.0102
TYR 510.0072
ARG 520.0056
ILE 530.0055
GLY 540.0077
ARG 550.0106
CYS 560.0149
PRO 570.0174
ASN 580.0182
THR 590.0145
TYR 600.0147
ALA 610.0117
CYS 620.0118
CYS 630.0105
LEU 640.0080
ARG 650.0088
LYS 660.0065
TRP 670.0045
ASP 680.0100
GLU 690.0160
SER 700.0157
LEU 710.0083
LEU 720.0154
ASN 730.0185
ARG 740.0118
THR 750.0151
LYS 760.0212
PRO 770.0177
GLU 780.0139
ALA 790.0160
ALA 800.0185
ALA 810.0160
LYS 820.0145
LYS 830.0171
GLU 840.0127
MET 850.0155
ASN 860.0135
LEU 870.0126
SER 880.0129
VAL 890.0116
GLY 900.0124
LEU 910.0106
GLY 920.0119
GLY 930.0139
GLY 940.0155
SER 950.0132
ASN 960.0128
LEU 970.0104
SER 980.0107
VAL 990.0093
GLY 1000.0098
LEU 1010.0074
GLY 1020.0150
GLU 1030.0298
ILE 1040.0404
GLY 1050.0552
GLY 1060.0646
GLY 1070.0468
SER 1080.0333
LYS 1090.0176
LEU 1100.0070
LEU 1110.0104
ASP 1120.0101
ILE 1130.0098
ASN 1140.0098
LEU 1150.0092
GLY 1160.0106
ARG 1170.0102
GLY 1180.0099
GLY 1190.0085
GLY 1200.0074
SER 1210.0080
MET 1220.0080
VAL 1230.0091
ASP 1240.0101
LEU 1250.0112
THR 1260.0121
PHE 1270.0128
GLY 1280.0137
GLY 1290.0136
VAL 1300.0147
GLY 1310.0119
GLY 1320.0127
GLY 1330.0113
SER 1340.0127
THR 1350.0115
PHE 1360.0136
THR 1370.0130
PHE 1380.0109
PHE 1390.0107
PRO 1400.0086
LEU 1410.0076
VAL 1420.0064
ILE 1430.0055
GLY 1440.0054
GLY 1450.0067
GLY 1460.0061
SER 1470.0066
ASP 1480.0070
ALA 1490.0074
MET 1500.0073
TYR 1510.0089
LEU 1520.0101
GLY 1530.0119
PHE 1540.0134
ALA 1550.0152
ALA 1560.0166
GLY 1570.0147
GLY 1580.0120
GLY 1590.0091
SER 1600.0056
ALA 1610.0103
GLY 1620.0089
GLY 1630.0083
GLU 1640.0100
ASN 1650.0106
HIS 1660.0101
VAL 1670.0086
ALA 1680.0070
PHE 1690.0059
GLY 1700.0045
PRO 1710.0037
GLY 1720.0028
PRO 1730.0044
GLY 1740.0045
VAL 1750.0054
ASP 1760.0062
LEU 1770.0079
THR 1780.0083
PHE 1790.0100
GLY 1800.0103
GLY 1810.0100
VAL 1820.0099
GLN 1830.0084
PHE 1840.0086
ALA 1850.0074
MET 1860.0104
VAL 1870.0131
ASN 1880.0143
ASN 1890.0204
GLY 1900.0213
PRO 1910.0216
GLY 1920.0202
PRO 1930.0246
GLY 1940.0201
GLU 1950.0072
SER 1960.0074
PHE 1970.0054
THR 1980.0065
ALA 1990.0061
GLN 2000.0045
PRO 2010.0029
ALA 2020.0042
ASP 2030.0032
MET 2040.0050
GLN 2050.0082
ALA 2060.0090
GLY 2070.0098
ILE 2080.0088
LYS 2090.0124
GLY 2100.0111
PRO 2110.0092
GLY 2120.0082
PRO 2130.0079
GLY 2140.0081
GLY 2150.0091
SER 2160.0114
ILE 2170.0185
GLN 2180.0271
VAL 2190.0272
ILE 2200.0409
ASN 2210.0286
GLY 2220.0192
SER 2230.0106
THR 2240.0184
ILE 2250.0179
GLY 2260.0372
THR 2270.0397
GLY 2280.0326
SER 2290.0251
LYS 2300.0151
LYS 2310.0164
THR 2320.0099
ILE 2330.0097
LEU 2340.0052
ILE 2350.0105
TYR 2360.0119
SER 2370.0129
ILE 2380.0145
ILE 2390.0146
GLY 2400.0163
VAL 2410.0185
LYS 2420.0180
LYS 2430.0167
GLY 2440.0178
THR 2450.0193
LEU 2460.0185
ALA 2470.0162
TRP 2480.0124
ALA 2490.0113
ARG 2500.0077
THR 2510.0080
GLY 2520.0081
PHE 2530.0109
SER 2540.0161
PRO 2550.0149
ALA 2560.0188
LYS 2570.0211
LYS 2580.0256
LEU 2590.0238
ASN 2600.0278
ALA 2610.0417
GLY 2620.0317
VAL 2630.0266
VAL 2640.0200
ARG 2650.0138
VAL 2660.0135
PHE 2670.0130
PHE 2680.0125
LEU 2690.0122
ASN 2700.0120
GLN 2710.0089
LYS 2720.0081
LYS 2730.0088
ALA 2740.0107
LYS 2750.0108
ASP 2760.0115
VAL 2770.0127
LEU 2780.0146
ARG 2790.0154
LYS 2800.0144
THR 2810.0113
SER 2820.0135
ARG 2830.0141
PRO 2840.0260
MET 2850.0406
VAL 2860.0321
ASP 2870.0286
LEU 2880.0249
THR 2890.0210
PHE 2900.0083
GLY 2910.0244
GLY 2920.0195

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.