CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 51  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0534
THR 260.0068
LYS 270.0061
CYS 280.0054
THR 290.0055
VAL 300.0053
SER 310.0048
HIS 320.0044
GLU 330.0039
VAL 340.0039
ALA 350.0040
ASP 360.0051
CYS 370.0051
SER 380.0053
HIS 390.0056
LEU 400.0055
LYS 410.0083
LEU 420.0068
THR 430.0076
GLN 440.0062
VAL 450.0043
PRO 460.0038
ASP 470.0030
ASP 480.0025
LEU 490.0018
PRO 500.0016
THR 510.0011
ASN 520.0025
ILE 530.0023
THR 540.0027
VAL 550.0029
LEU 560.0029
ASN 570.0040
LEU 580.0043
THR 590.0054
HIS 600.0066
ASN 610.0078
GLN 620.0091
LEU 630.0073
ARG 640.0090
ARG 650.0079
LEU 660.0064
PRO 670.0079
ALA 680.0077
ALA 690.0082
ASN 700.0061
PHE 710.0044
THR 720.0057
ARG 730.0039
TYR 740.0028
SER 750.0049
GLN 760.0040
LEU 770.0029
THR 780.0047
SER 790.0034
LEU 800.0011
ASP 810.0029
VAL 820.0036
GLY 830.0053
PHE 840.0074
ASN 850.0076
THR 860.0090
ILE 870.0073
SER 880.0085
LYS 890.0082
LEU 900.0064
GLU 910.0086
PRO 920.0092
GLU 930.0101
LEU 940.0074
CYS 950.0077
GLN 960.0099
LYS 970.0085
LEU 980.0067
PRO 990.0090
MET 1000.0082
LEU 1010.0062
LYS 1020.0071
VAL 1030.0052
LEU 1040.0026
ASN 1050.0022
LEU 1060.0020
GLN 1070.0043
HIS 1080.0065
ASN 1090.0063
GLU 1100.0072
LEU 1110.0045
SER 1120.0051
GLN 1130.0059
LEU 1140.0052
SER 1150.0073
ASP 1160.0088
LYS 1170.0098
THR 1180.0073
PHE 1190.0069
ALA 1200.0097
PHE 1210.0104
CYS 1220.0085
THR 1230.0106
ASN 1240.0101
LEU 1250.0078
THR 1260.0087
GLU 1270.0069
LEU 1280.0046
HIS 1290.0037
LEU 1300.0021
MET 1310.0044
SER 1320.0054
ASN 1330.0040
SER 1340.0046
ILE 1350.0023
GLN 1360.0021
LYS 1370.0021
ILE 1380.0031
LYS 1390.0046
ASN 1400.0064
ASN 1410.0071
PRO 1420.0065
PHE 1430.0069
VAL 1440.0089
LYS 1450.0099
GLN 1460.0088
LYS 1470.0107
ASN 1480.0107
LEU 1490.0088
ILE 1500.0095
THR 1510.0079
LEU 1520.0063
ASP 1530.0056
LEU 1540.0045
SER 1550.0056
HIS 1560.0060
ASN 1570.0045
GLY 1580.0042
LEU 1590.0038
SER 1600.0044
SER 1610.0053
THR 1620.0059
LYS 1630.0055
LEU 1640.0055
GLY 1650.0060
THR 1660.0066
GLN 1670.0079
VAL 1680.0086
GLN 1690.0083
LEU 1700.0082
GLU 1710.0098
ASN 1720.0101
LEU 1730.0087
GLN 1740.0094
GLU 1750.0083
LEU 1760.0073
LEU 1770.0069
LEU 1780.0065
SER 1790.0070
ASN 1800.0068
ASN 1810.0061
LYS 1820.0064
ILE 1830.0068
GLN 1840.0076
ALA 1850.0080
LEU 1860.0076
LYS 1870.0076
SER 1880.0075
GLU 1890.0071
GLU 1900.0068
LEU 1910.0069
ASP 1920.0070
ILE 1930.0069
PHE 1940.0074
ALA 1950.0079
ASN 1960.0083
SER 1970.0079
SER 1980.0085
LEU 1990.0079
LYS 2000.0084
LYS 2010.0075
LEU 2020.0073
GLU 2030.0072
LEU 2040.0072
SER 2050.0073
SER 2060.0074
ASN 2070.0077
GLN 2080.0082
ILE 2090.0082
LYS 2100.0087
GLU 2110.0089
PHE 2120.0084
SER 2130.0088
PRO 2140.0088
GLY 2150.0083
CYS 2160.0077
PHE 2170.0073
HIS 2180.0075
ALA 2190.0072
ILE 2200.0070
GLY 2210.0064
ARG 2220.0065
LEU 2230.0064
PHE 2240.0064
GLY 2250.0063
LEU 2260.0060
PHE 2270.0061
LEU 2280.0064
ASN 2290.0063
ASN 2300.0067
VAL 2310.0070
GLN 2320.0073
LEU 2330.0069
GLY 2340.0064
PRO 2350.0058
SER 2360.0073
LEU 2370.0072
THR 2380.0060
GLU 2390.0061
LYS 2400.0070
LEU 2410.0068
CYS 2420.0059
LEU 2430.0067
GLU 2440.0070
LEU 2450.0060
ALA 2460.0058
ASN 2470.0059
THR 2480.0057
SER 2490.0051
ILE 2500.0049
ARG 2510.0033
ASN 2520.0033
LEU 2530.0037
SER 2540.0038
LEU 2550.0043
SER 2560.0042
ASN 2570.0053
SER 2580.0054
GLN 2590.0056
LEU 2600.0044
SER 2610.0045
THR 2620.0040
THR 2630.0028
SER 2640.0026
ASN 2650.0017
THR 2660.0036
THR 2670.0037
PHE 2680.0027
LEU 2690.0032
GLY 2700.0041
LEU 2710.0032
LYS 2720.0033
TRP 2730.0045
THR 2740.0036
ASN 2750.0029
LEU 2760.0019
THR 2770.0014
MET 2780.0005
LEU 2790.0010
ASP 2800.0017
LEU 2810.0025
SER 2820.0029
TYR 2830.0039
ASN 2840.0039
ASN 2850.0045
LEU 2860.0036
ASN 2870.0046
VAL 2880.0045
VAL 2890.0039
GLY 2900.0040
ASN 2910.0040
ASP 2920.0029
SER 2930.0023
PHE 2940.0020
ALA 2950.0023
TRP 2960.0009
LEU 2970.0013
PRO 2980.0030
GLN 2990.0032
LEU 3000.0023
GLU 3010.0038
TYR 3020.0035
PHE 3030.0032
PHE 3040.0033
LEU 3050.0036
GLU 3060.0028
TYR 3070.0032
ASN 3080.0035
ASN 3090.0048
ILE 3100.0050
GLN 3110.0063
HIS 3120.0067
LEU 3130.0063
PHE 3140.0066
SER 3150.0069
HIS 3160.0057
SER 3170.0052
LEU 3180.0052
HIS 3190.0050
GLY 3200.0046
LEU 3210.0046
PHE 3220.0056
ASN 3230.0056
VAL 3240.0056
ARG 3250.0067
TYR 3260.0065
LEU 3270.0064
ASN 3280.0065
LEU 3290.0064
LYS 3300.0066
ARG 3310.0052
SER 3320.0048
PHE 3330.0061
THR 3340.0065
LYS 3350.0076
GLN 3360.0064
SER 3370.0079
ILE 3380.0095
SER 3390.0118
LEU 3400.0118
ALA 3410.0099
SER 3420.0087
LEU 3430.0079
PRO 3440.0067
LYS 3450.0081
ILE 3460.0072
ASP 3470.0075
ASP 3480.0078
PHE 3490.0076
SER 3500.0072
PHE 3510.0071
GLN 3520.0070
TRP 3530.0067
LEU 3540.0070
LYS 3550.0071
CYS 3560.0077
LEU 3570.0080
GLU 3580.0085
HIS 3590.0089
LEU 3600.0087
ASN 3610.0093
MET 3620.0091
GLU 3630.0095
ASP 3640.0095
ASN 3650.0091
ASP 3660.0084
ILE 3670.0076
PRO 3680.0082
GLY 3690.0087
ILE 3700.0082
LYS 3710.0071
SER 3720.0072
ASN 3730.0070
MET 3740.0070
PHE 3750.0070
THR 3760.0068
GLY 3770.0068
LEU 3780.0073
ILE 3790.0071
ASN 3800.0077
LEU 3810.0084
LYS 3820.0088
TYR 3830.0097
LEU 3840.0097
SER 3850.0109
LEU 3860.0107
SER 3870.0129
ASN 3880.0137
SER 3890.0116
PHE 3900.0112
THR 3910.0159
SER 3920.0165
LEU 3930.0140
ARG 3940.0171
THR 3950.0161
LEU 3960.0142
THR 3970.0140
ASN 3980.0124
GLU 3990.0104
THR 4000.0103
PHE 4010.0072
VAL 4020.0061
SER 4030.0056
LEU 4040.0058
ALA 4050.0058
HIS 4060.0050
SER 4070.0061
PRO 4080.0066
LEU 4090.0070
HIS 4100.0076
ILE 4110.0094
LEU 4120.0097
ASN 4130.0126
LEU 4140.0135
THR 4150.0166
LYS 4160.0199
ASN 4170.0180
LYS 4180.0210
ILE 4190.0184
SER 4200.0217
LYS 4210.0201
ILE 4220.0167
GLU 4230.0174
SER 4240.0163
ASP 4250.0133
ALA 4260.0112
PHE 4270.0081
SER 4280.0084
TRP 4290.0059
LEU 4300.0045
GLY 4310.0040
HIS 4320.0045
LEU 4330.0046
GLU 4340.0060
VAL 4350.0084
LEU 4360.0093
ASP 4370.0134
LEU 4380.0154
GLY 4390.0188
LEU 4400.0229
ASN 4410.0238
GLU 4420.0263
ILE 4430.0234
GLY 4440.0265
GLN 4450.0249
GLU 4460.0249
LEU 4470.0202
THR 4480.0216
GLY 4490.0171
GLN 4500.0174
GLU 4510.0145
TRP 4520.0109
ARG 4530.0117
GLY 4540.0092
LEU 4550.0060
GLU 4560.0062
ASN 4570.0047
ILE 4580.0029
PHE 4590.0047
GLU 4600.0068
ILE 4610.0086
TYR 4620.0132
LEU 4630.0160
SER 4640.0192
TYR 4650.0240
ASN 4660.0246
LYS 4670.0288
TYR 4680.0271
LEU 4690.0227
GLN 4700.0235
LEU 4710.0195
THR 4720.0212
ARG 4730.0203
ASN 4740.0191
SER 4750.0161
PHE 4760.0114
ALA 4770.0137
LEU 4780.0124
VAL 4790.0079
PRO 4800.0086
SER 4810.0060
LEU 4820.0022
GLN 4830.0039
ARG 4840.0054
LEU 4850.0068
MET 4860.0113
LEU 4870.0141
ARG 4880.0175
ARG 4890.0221
VAL 4900.0220
ALA 4910.0241
LEU 4920.0198
LYS 4930.0220
ASN 4940.0213
VAL 4950.0158
ASP 4960.0166
SER 4970.0188
SER 4980.0203
PRO 4990.0180
SER 5000.0138
PRO 5010.0127
PHE 5020.0083
GLN 5030.0105
PRO 5040.0108
LEU 5050.0064
ARG 5060.0069
ASN 5070.0060
LEU 5080.0029
THR 5090.0051
ILE 5100.0053
LEU 5110.0047
ASP 5120.0088
LEU 5130.0100
SER 5140.0131
ASN 5150.0171
ASN 5160.0165
ASN 5170.0156
ILE 5180.0138
ALA 5190.0131
ASN 5200.0129
ILE 5210.0098
ASN 5220.0102
ASP 5230.0085
ASP 5240.0097
MET 5250.0077
LEU 5260.0044
GLU 5270.0073
GLY 5280.0081
LEU 5290.0052
GLU 5300.0075
LYS 5310.0064
LEU 5320.0042
GLU 5330.0059
ILE 5340.0055
LEU 5350.0040
ASP 5360.0061
LEU 5370.0058
GLN 5380.0085
HIS 5390.0106
ASN 5400.0095
ASN 5410.0073
LEU 5420.0045
ALA 5430.0033
ARG 5440.0039
LEU 5450.0039
TRP 5460.0017
LYS 5470.0018
HIS 5480.0038
ALA 5490.0039
ASN 5500.0047
PRO 5510.0077
GLY 5520.0094
GLY 5530.0068
PRO 5540.0039
ILE 5550.0040
TYR 5560.0025
PHE 5570.0019
LEU 5580.0020
LYS 5590.0042
GLY 5600.0055
LEU 5610.0043
SER 5620.0060
HIS 5630.0064
LEU 5640.0055
HIS 5650.0067
ILE 5660.0061
LEU 5670.0053
ASN 5680.0055
LEU 5690.0050
GLU 5700.0061
SER 5710.0062
ASN 5720.0045
GLY 5730.0042
PHE 5740.0036
ASP 5750.0041
GLU 5760.0043
ILE 5770.0045
PRO 5780.0047
VAL 5790.0055
GLU 5800.0054
VAL 5810.0046
PHE 5820.0054
LYS 5830.0057
ASP 5840.0058
LEU 5850.0058
PHE 5860.0067
GLU 5870.0064
LEU 5880.0062
LYS 5890.0063
ILE 5900.0061
ILE 5910.0058
ASP 5920.0057
LEU 5930.0058
GLY 5940.0058
LEU 5950.0057
ASN 5960.0051
ASN 5970.0061
LEU 5980.0062
ASN 5990.0070
THR 6000.0075
LEU 6010.0068
PRO 6020.0069
ALA 6030.0068
SER 6040.0065
VAL 6050.0065
PHE 6060.0064
ASN 6070.0065
ASN 6080.0064
GLN 6090.0059
VAL 6100.0057
SER 6110.0052
LEU 6120.0053
LYS 6130.0052
SER 6140.0055
LEU 6150.0057
ASN 6160.0051
LEU 6170.0056
GLN 6180.0064
LYS 6190.0077
ASN 6200.0075
LEU 6210.0085
ILE 6220.0075
THR 6230.0076
SER 6240.0068
VAL 6250.0058
GLU 6260.0053
LYS 6270.0045
LYS 6280.0056
VAL 6290.0061
PHE 6300.0050
GLY 6310.0047
PRO 6320.0049
ALA 6330.0050
PHE 6340.0046
ARG 6350.0042
ASN 6360.0042
LEU 6370.0048
THR 6380.0059
GLU 6390.0066
LEU 6400.0063
ASP 6410.0060
MET 6420.0062
ARG 6430.0083
PHE 6440.0100
ASN 6450.0087
PRO 6460.0112
PHE 6470.0093
ASP 6480.0089
CYS 6490.0084
THR 6500.0071
CYS 6510.0052
GLU 6520.0043
SER 6530.0057
ILE 6540.0059
ALA 6550.0055
TRP 6560.0048
PHE 6570.0059
VAL 6580.0078
ASN 6590.0074
TRP 6600.0067
ILE 6610.0093
ASN 6620.0112
GLU 6630.0108
THR 6640.0108
HIS 6650.0133
THR 6660.0087
ASN 6670.0097
ILE 6680.0095
PRO 6690.0106
GLU 6700.0110
LEU 6710.0104
SER 6720.0123
SER 6730.0135
HIS 6740.0122
TYR 6750.0106
LEU 6760.0131
CYS 6770.0126
ASN 6780.0145
THR 6790.0135
PRO 6800.0136
PRO 6810.0173
HIS 6820.0169
TYR 6830.0152
HIS 6840.0172
GLY 6850.0178
PHE 6860.0158
PRO 6870.0141
VAL 6880.0113
ARG 6890.0114
LEU 6900.0134
PHE 6910.0123
ASP 6920.0121
THR 6930.0098
SER 6940.0115
SER 6950.0097
CYS 6960.0072
GLU 10.0119
ALA 20.0117
ALA 30.0116
ALA 40.0101
LYS 50.0090
MET 60.0090
GLN 70.0090
ARG 80.0075
LEU 90.0074
VAL 100.0084
LEU 110.0077
LEU 120.0059
LEU 130.0084
ALA 140.0096
ILE 150.0075
SER 160.0114
LEU 170.0186
LEU 180.0187
LEU 190.0162
TYR 200.0247
GLN 210.0314
ASP 220.0296
LEU 230.0326
PRO 240.0417
VAL 250.0446
ARG 260.0346
SER 270.0273
GLU 280.0230
PHE 290.0251
GLU 300.0250
LEU 310.0134
ASP 320.0078
ARG 330.0117
ILE 340.0154
CYS 350.0161
GLY 360.0204
TYR 370.0285
GLY 380.0261
THR 390.0222
ALA 400.0133
ARG 410.0098
CYS 420.0075
ARG 430.0064
LYS 440.0072
LYS 450.0073
CYS 460.0063
ARG 470.0076
SER 480.0084
GLN 490.0067
GLU 500.0058
TYR 510.0059
ARG 520.0060
ILE 530.0072
GLY 540.0071
ARG 550.0060
CYS 560.0068
PRO 570.0062
ASN 580.0054
THR 590.0070
TYR 600.0061
ALA 610.0064
CYS 620.0075
CYS 630.0067
LEU 640.0074
ARG 650.0067
LYS 660.0084
TRP 670.0097
ASP 680.0105
GLU 690.0100
SER 700.0157
LEU 710.0162
LEU 720.0112
ASN 730.0165
ARG 740.0217
THR 750.0181
LYS 760.0182
PRO 770.0308
GLU 780.0534
ALA 790.0532
ALA 800.0419
ALA 810.0118
LYS 820.0121
LYS 830.0131
GLU 840.0146
MET 850.0155
ASN 860.0139
LEU 870.0111
SER 880.0072
VAL 890.0047
GLY 900.0028
LEU 910.0070
GLY 920.0122
GLY 930.0162
GLY 940.0124
SER 950.0078
ASN 960.0033
LEU 970.0054
SER 980.0079
VAL 990.0117
GLY 1000.0150
LEU 1010.0160
GLY 1020.0166
GLU 1030.0155
ILE 1040.0217
GLY 1050.0274
GLY 1060.0356
GLY 1070.0273
SER 1080.0214
LYS 1090.0127
LEU 1100.0123
LEU 1110.0180
ASP 1120.0175
ILE 1130.0132
ASN 1140.0151
LEU 1150.0132
GLY 1160.0172
ARG 1170.0243
GLY 1180.0224
GLY 1190.0221
GLY 1200.0171
SER 1210.0108
MET 1220.0063
VAL 1230.0046
ASP 1240.0024
LEU 1250.0068
THR 1260.0093
PHE 1270.0114
GLY 1280.0123
GLY 1290.0143
VAL 1300.0162
GLY 1310.0135
GLY 1320.0127
GLY 1330.0118
SER 1340.0120
THR 1350.0117
PHE 1360.0142
THR 1370.0152
PHE 1380.0129
PHE 1390.0142
PRO 1400.0124
LEU 1410.0144
VAL 1420.0135
ILE 1430.0158
GLY 1440.0186
GLY 1450.0201
GLY 1460.0228
SER 1470.0213
ASP 1480.0171
ALA 1490.0165
MET 1500.0129
TYR 1510.0123
LEU 1520.0116
GLY 1530.0138
PHE 1540.0145
ALA 1550.0168
ALA 1560.0103
GLY 1570.0100
GLY 1580.0104
GLY 1590.0097
SER 1600.0094
ALA 1610.0097
GLY 1620.0107
GLY 1630.0112
GLU 1640.0118
ASN 1650.0111
HIS 1660.0080
VAL 1670.0059
ALA 1680.0019
PHE 1690.0025
GLY 1700.0044
PRO 1710.0088
GLY 1720.0080
PRO 1730.0055
GLY 1740.0031
VAL 1750.0023
ASP 1760.0050
LEU 1770.0082
THR 1780.0103
PHE 1790.0140
GLY 1800.0165
GLY 1810.0172
VAL 1820.0183
GLN 1830.0145
PHE 1840.0137
ALA 1850.0113
MET 1860.0093
VAL 1870.0136
ASN 1880.0107
ASN 1890.0160
GLY 1900.0128
PRO 1910.0197
GLY 1920.0164
PRO 1930.0140
GLY 1940.0083
GLU 1950.0017
SER 1960.0067
PHE 1970.0039
THR 1980.0060
ALA 1990.0035
GLN 2000.0028
PRO 2010.0039
ALA 2020.0045
ASP 2030.0058
MET 2040.0078
GLN 2050.0108
ALA 2060.0063
GLY 2070.0195
ILE 2080.0054
LYS 2090.0178
GLY 2100.0175
PRO 2110.0061
GLY 2120.0092
PRO 2130.0075
GLY 2140.0082
GLY 2150.0132
SER 2160.0302
ILE 2170.0187
GLN 2180.0130
VAL 2190.0063
ILE 2200.0126
ASN 2210.0077
GLY 2220.0041
SER 2230.0038
THR 2240.0079
ILE 2250.0114
GLY 2260.0195
THR 2270.0177
GLY 2280.0125
SER 2290.0064
LYS 2300.0054
LYS 2310.0047
THR 2320.0042
ILE 2330.0032
LEU 2340.0044
ILE 2350.0052
TYR 2360.0084
SER 2370.0087
ILE 2380.0111
ILE 2390.0088
GLY 2400.0126
VAL 2410.0114
LYS 2420.0025
LYS 2430.0083
GLY 2440.0214
THR 2450.0195
LEU 2460.0119
ALA 2470.0106
TRP 2480.0102
ALA 2490.0104
ARG 2500.0095
THR 2510.0081
GLY 2520.0030
PHE 2530.0043
SER 2540.0066
PRO 2550.0109
ALA 2560.0147
LYS 2570.0169
LYS 2580.0203
LEU 2590.0197
ASN 2600.0231
ALA 2610.0231
GLY 2620.0165
VAL 2630.0155
VAL 2640.0097
ARG 2650.0098
VAL 2660.0106
PHE 2670.0074
PHE 2680.0073
LEU 2690.0055
ASN 2700.0079
GLN 2710.0093
LYS 2720.0085
LYS 2730.0074
ALA 2740.0088
LYS 2750.0103
ASP 2760.0099
VAL 2770.0088
LEU 2780.0089
ARG 2790.0093
LYS 2800.0090
THR 2810.0076
SER 2820.0046
ARG 2830.0029
PRO 2840.0101
MET 2850.0140
VAL 2860.0078
ASP 2870.0144
LEU 2880.0117
THR 2890.0167
PHE 2900.0086
GLY 2910.0116
GLY 2920.0226

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.