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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 52  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1093
THR 260.0019
LYS 270.0016
CYS 280.0013
THR 290.0013
VAL 300.0013
SER 310.0013
HIS 320.0016
GLU 330.0012
VAL 340.0012
ALA 350.0008
ASP 360.0008
CYS 370.0010
SER 380.0012
HIS 390.0016
LEU 400.0017
LYS 410.0016
LEU 420.0014
THR 430.0011
GLN 440.0012
VAL 450.0011
PRO 460.0012
ASP 470.0013
ASP 480.0014
LEU 490.0013
PRO 500.0014
THR 510.0013
ASN 520.0013
ILE 530.0011
THR 540.0011
VAL 550.0009
LEU 560.0008
ASN 570.0009
LEU 580.0010
THR 590.0012
HIS 600.0015
ASN 610.0013
GLN 620.0011
LEU 630.0007
ARG 640.0005
ARG 650.0006
LEU 660.0006
PRO 670.0009
ALA 680.0011
ALA 690.0014
ASN 700.0013
PHE 710.0011
THR 720.0013
ARG 730.0014
TYR 740.0012
SER 750.0012
GLN 760.0012
LEU 770.0009
THR 780.0006
SER 790.0006
LEU 800.0006
ASP 810.0006
VAL 820.0006
GLY 830.0008
PHE 840.0009
ASN 850.0007
THR 860.0004
ILE 870.0003
SER 880.0006
LYS 890.0008
LEU 900.0007
GLU 910.0009
PRO 920.0011
GLU 930.0012
LEU 940.0008
CYS 950.0007
GLN 960.0011
LYS 970.0011
LEU 980.0008
PRO 990.0008
MET 1000.0006
LEU 1010.0003
LYS 1020.0003
VAL 1030.0005
LEU 1040.0004
ASN 1050.0006
LEU 1060.0006
GLN 1070.0010
HIS 1080.0010
ASN 1090.0007
GLU 1100.0008
LEU 1110.0010
SER 1120.0014
GLN 1130.0015
LEU 1140.0015
SER 1150.0016
ASP 1160.0016
LYS 1170.0014
THR 1180.0011
PHE 1190.0010
ALA 1200.0011
PHE 1210.0009
CYS 1220.0006
THR 1230.0007
ASN 1240.0004
LEU 1250.0006
THR 1260.0009
GLU 1270.0011
LEU 1280.0011
HIS 1290.0012
LEU 1300.0013
MET 1310.0015
SER 1320.0016
ASN 1330.0014
SER 1340.0017
ILE 1350.0017
GLN 1360.0020
LYS 1370.0021
ILE 1380.0019
LYS 1390.0020
ASN 1400.0020
ASN 1410.0017
PRO 1420.0015
PHE 1430.0014
VAL 1440.0014
LYS 1450.0011
GLN 1460.0012
LYS 1470.0012
ASN 1480.0011
LEU 1490.0012
ILE 1500.0014
THR 1510.0016
LEU 1520.0016
ASP 1530.0017
LEU 1540.0018
SER 1550.0020
HIS 1560.0020
ASN 1570.0020
GLY 1580.0021
LEU 1590.0021
SER 1600.0023
SER 1610.0022
THR 1620.0021
LYS 1630.0020
LEU 1640.0019
GLY 1650.0018
THR 1660.0019
GLN 1670.0018
VAL 1680.0017
GLN 1690.0016
LEU 1700.0015
GLU 1710.0017
ASN 1720.0016
LEU 1730.0017
GLN 1740.0018
GLU 1750.0018
LEU 1760.0018
LEU 1770.0019
LEU 1780.0020
SER 1790.0021
ASN 1800.0022
ASN 1810.0022
LYS 1820.0022
ILE 1830.0020
GLN 1840.0019
ALA 1850.0018
LEU 1860.0018
LYS 1870.0017
SER 1880.0016
GLU 1890.0017
GLU 1900.0018
LEU 1910.0018
ASP 1920.0018
ILE 1930.0018
PHE 1940.0018
ALA 1950.0017
ASN 1960.0017
SER 1970.0017
SER 1980.0017
LEU 1990.0017
LYS 2000.0017
LYS 2010.0017
LEU 2020.0017
GLU 2030.0018
LEU 2040.0018
SER 2050.0018
SER 2060.0019
ASN 2070.0018
GLN 2080.0018
ILE 2090.0017
LYS 2100.0016
GLU 2110.0014
PHE 2120.0013
SER 2130.0013
PRO 2140.0012
GLY 2150.0012
CYS 2160.0014
PHE 2170.0014
HIS 2180.0013
ALA 2190.0015
ILE 2200.0016
GLY 2210.0015
ARG 2220.0015
LEU 2230.0015
PHE 2240.0015
GLY 2250.0015
LEU 2260.0014
PHE 2270.0014
LEU 2280.0014
ASN 2290.0015
ASN 2300.0015
VAL 2310.0014
GLN 2320.0012
LEU 2330.0011
GLY 2340.0009
PRO 2350.0007
SER 2360.0008
LEU 2370.0009
THR 2380.0009
GLU 2390.0007
LYS 2400.0008
LEU 2410.0010
CYS 2420.0009
LEU 2430.0008
GLU 2440.0009
LEU 2450.0010
ALA 2460.0008
ASN 2470.0008
THR 2480.0009
SER 2490.0010
ILE 2500.0011
ARG 2510.0010
ASN 2520.0011
LEU 2530.0010
SER 2540.0011
LEU 2550.0010
SER 2560.0010
ASN 2570.0010
SER 2580.0009
GLN 2590.0009
LEU 2600.0008
SER 2610.0007
THR 2620.0006
THR 2630.0006
SER 2640.0005
ASN 2650.0005
THR 2660.0006
THR 2670.0006
PHE 2680.0007
LEU 2690.0006
GLY 2700.0006
LEU 2710.0007
LYS 2720.0007
TRP 2730.0006
THR 2740.0007
ASN 2750.0009
LEU 2760.0007
THR 2770.0008
MET 2780.0009
LEU 2790.0008
ASP 2800.0008
LEU 2810.0007
SER 2820.0007
TYR 2830.0007
ASN 2840.0006
ASN 2850.0006
LEU 2860.0007
ASN 2870.0006
VAL 2880.0005
VAL 2890.0005
GLY 2900.0005
ASN 2910.0006
ASP 2920.0006
SER 2930.0006
PHE 2940.0007
ALA 2950.0007
TRP 2960.0007
LEU 2970.0008
PRO 2980.0008
GLN 2990.0008
LEU 3000.0008
GLU 3010.0007
TYR 3020.0007
PHE 3030.0006
PHE 3040.0007
LEU 3050.0006
GLU 3060.0005
TYR 3070.0005
ASN 3080.0005
ASN 3090.0005
ILE 3100.0005
GLN 3110.0005
HIS 3120.0005
LEU 3130.0005
PHE 3140.0005
SER 3150.0005
HIS 3160.0006
SER 3170.0006
LEU 3180.0007
HIS 3190.0007
GLY 3200.0007
LEU 3210.0008
PHE 3220.0007
ASN 3230.0008
VAL 3240.0008
ARG 3250.0009
TYR 3260.0008
LEU 3270.0007
ASN 3280.0007
LEU 3290.0006
LYS 3300.0007
ARG 3310.0006
SER 3320.0005
PHE 3330.0005
THR 3340.0005
LYS 3350.0006
GLN 3360.0005
SER 3370.0005
ILE 3380.0005
SER 3390.0006
LEU 3400.0006
ALA 3410.0005
SER 3420.0006
LEU 3430.0005
PRO 3440.0005
LYS 3450.0006
ILE 3460.0006
ASP 3470.0006
ASP 3480.0006
PHE 3490.0006
SER 3500.0006
PHE 3510.0007
GLN 3520.0006
TRP 3530.0007
LEU 3540.0008
LYS 3550.0008
CYS 3560.0008
LEU 3570.0009
GLU 3580.0011
HIS 3590.0011
LEU 3600.0010
ASN 3610.0009
MET 3620.0008
GLU 3630.0008
ASP 3640.0007
ASN 3650.0006
ASP 3660.0005
ILE 3670.0006
PRO 3680.0007
GLY 3690.0009
ILE 3700.0010
LYS 3710.0009
SER 3720.0010
ASN 3730.0008
MET 3740.0008
PHE 3750.0009
THR 3760.0009
GLY 3770.0008
LEU 3780.0009
ILE 3790.0010
ASN 3800.0011
LEU 3810.0013
LYS 3820.0016
TYR 3830.0015
LEU 3840.0013
SER 3850.0013
LEU 3860.0011
SER 3870.0012
ASN 3880.0010
SER 3890.0008
PHE 3900.0008
THR 3910.0009
SER 3920.0011
LEU 3930.0012
ARG 3940.0014
THR 3950.0016
LEU 3960.0016
THR 3970.0017
ASN 3980.0018
GLU 3990.0016
THR 4000.0015
PHE 4010.0015
VAL 4020.0014
SER 4030.0012
LEU 4040.0014
ALA 4050.0016
HIS 4060.0014
SER 4070.0014
PRO 4080.0018
LEU 4090.0018
HIS 4100.0022
ILE 4110.0021
LEU 4120.0019
ASN 4130.0018
LEU 4140.0016
THR 4150.0016
LYS 4160.0014
ASN 4170.0013
LYS 4180.0014
ILE 4190.0015
SER 4200.0017
LYS 4210.0018
ILE 4220.0020
GLU 4230.0021
SER 4240.0023
ASP 4250.0023
ALA 4260.0020
PHE 4270.0021
SER 4280.0023
TRP 4290.0020
LEU 4300.0022
GLY 4310.0025
HIS 4320.0025
LEU 4330.0024
GLU 4340.0027
VAL 4350.0026
LEU 4360.0023
ASP 4370.0022
LEU 4380.0020
GLY 4390.0020
LEU 4400.0018
ASN 4410.0017
GLU 4420.0016
ILE 4430.0018
GLY 4440.0018
GLN 4450.0020
GLU 4460.0021
LEU 4470.0024
THR 4480.0026
GLY 4490.0028
GLN 4500.0029
GLU 4510.0025
TRP 4520.0027
ARG 4530.0028
GLY 4540.0029
LEU 4550.0029
GLU 4560.0031
ASN 4570.0032
ILE 4580.0028
PHE 4590.0031
GLU 4600.0027
ILE 4610.0027
TYR 4620.0024
LEU 4630.0021
SER 4640.0020
TYR 4650.0018
ASN 4660.0018
LYS 4670.0015
TYR 4680.0016
LEU 4690.0018
GLN 4700.0020
LEU 4710.0022
THR 4720.0027
ARG 4730.0031
ASN 4740.0034
SER 4750.0030
PHE 4760.0032
ALA 4770.0037
LEU 4780.0037
VAL 4790.0037
PRO 4800.0042
SER 4810.0046
LEU 4820.0040
GLN 4830.0042
ARG 4840.0035
LEU 4850.0029
MET 4860.0024
LEU 4870.0020
ARG 4880.0018
ARG 4890.0016
VAL 4900.0016
ALA 4910.0014
LEU 4920.0015
LYS 4930.0017
ASN 4940.0020
VAL 4950.0019
ASP 4960.0022
SER 4970.0027
SER 4980.0034
PRO 4990.0035
SER 5000.0028
PRO 5010.0027
PHE 5020.0027
GLN 5030.0032
PRO 5040.0039
LEU 5050.0036
ARG 5060.0039
ASN 5070.0041
LEU 5080.0037
THR 5090.0034
ILE 5100.0033
LEU 5110.0022
ASP 5120.0020
LEU 5130.0015
SER 5140.0015
ASN 5150.0016
ASN 5160.0014
ASN 5170.0016
ILE 5180.0015
ALA 5190.0019
ASN 5200.0020
ILE 5210.0017
ASN 5220.0022
ASP 5230.0022
ASP 5240.0023
MET 5250.0019
LEU 5260.0015
GLU 5270.0023
GLY 5280.0027
LEU 5290.0023
GLU 5300.0023
LYS 5310.0028
LEU 5320.0021
GLU 5330.0022
ILE 5340.0024
LEU 5350.0017
ASP 5360.0016
LEU 5370.0015
GLN 5380.0020
HIS 5390.0022
ASN 5400.0018
ASN 5410.0023
LEU 5420.0022
ALA 5430.0028
ARG 5440.0029
LEU 5450.0026
TRP 5460.0028
LYS 5470.0034
HIS 5480.0038
ALA 5490.0041
ASN 5500.0036
PRO 5510.0040
GLY 5520.0038
GLY 5530.0036
PRO 5540.0030
ILE 5550.0024
TYR 5560.0020
PHE 5570.0014
LEU 5580.0014
LYS 5590.0015
GLY 5600.0013
LEU 5610.0007
SER 5620.0009
HIS 5630.0008
LEU 5640.0013
HIS 5650.0022
ILE 5660.0026
LEU 5670.0023
ASN 5680.0024
LEU 5690.0023
GLU 5700.0027
SER 5710.0028
ASN 5720.0026
GLY 5730.0029
PHE 5740.0029
ASP 5750.0032
GLU 5760.0033
ILE 5770.0031
PRO 5780.0031
VAL 5790.0033
GLU 5800.0028
VAL 5810.0027
PHE 5820.0028
LYS 5830.0029
ASP 5840.0023
LEU 5850.0023
PHE 5860.0029
GLU 5870.0026
LEU 5880.0028
LYS 5890.0034
ILE 5900.0035
ILE 5910.0035
ASP 5920.0034
LEU 5930.0033
GLY 5940.0033
LEU 5950.0031
ASN 5960.0029
ASN 5970.0024
LEU 5980.0026
ASN 5990.0022
THR 6000.0025
LEU 6010.0031
PRO 6020.0033
ALA 6030.0037
SER 6040.0039
VAL 6050.0036
PHE 6060.0041
ASN 6070.0045
ASN 6080.0042
GLN 6090.0042
VAL 6100.0047
SER 6110.0051
LEU 6120.0048
LYS 6130.0051
SER 6140.0047
LEU 6150.0043
ASN 6160.0043
LEU 6170.0034
GLN 6180.0032
LYS 6190.0026
ASN 6200.0021
LEU 6210.0012
ILE 6220.0014
THR 6230.0006
SER 6240.0017
VAL 6250.0022
GLU 6260.0030
LYS 6270.0040
LYS 6280.0044
VAL 6290.0040
PHE 6300.0040
GLY 6310.0049
PRO 6320.0054
ALA 6330.0048
PHE 6340.0051
ARG 6350.0060
ASN 6360.0064
LEU 6370.0058
THR 6380.0063
GLU 6390.0055
LEU 6400.0045
ASP 6410.0045
MET 6420.0032
ARG 6430.0034
PHE 6440.0030
ASN 6450.0017
PRO 6460.0019
PHE 6470.0012
ASP 6480.0023
CYS 6490.0029
THR 6500.0040
CYS 6510.0038
GLU 6520.0044
SER 6530.0027
ILE 6540.0013
ALA 6550.0020
TRP 6560.0024
PHE 6570.0019
VAL 6580.0014
ASN 6590.0023
TRP 6600.0033
ILE 6610.0032
ASN 6620.0029
GLU 6630.0034
THR 6640.0040
HIS 6650.0045
THR 6660.0057
ASN 6670.0061
ILE 6680.0051
PRO 6690.0059
GLU 6700.0057
LEU 6710.0049
SER 6720.0053
SER 6730.0060
HIS 6740.0049
TYR 6750.0034
LEU 6760.0042
CYS 6770.0037
ASN 6780.0044
THR 6790.0046
PRO 6800.0061
PRO 6810.0082
HIS 6820.0084
TYR 6830.0064
HIS 6840.0070
GLY 6850.0071
PHE 6860.0059
PRO 6870.0047
VAL 6880.0025
ARG 6890.0027
LEU 6900.0035
PHE 6910.0029
ASP 6920.0031
THR 6930.0027
SER 6940.0042
SER 6950.0060
CYS 6960.0060
GLU 10.0010
ALA 20.0010
ALA 30.0007
ALA 40.0007
LYS 50.0008
MET 60.0008
GLN 70.0006
ARG 80.0007
LEU 90.0009
VAL 100.0008
LEU 110.0007
LEU 120.0008
LEU 130.0010
ALA 140.0010
ILE 150.0009
SER 160.0018
LEU 170.0024
LEU 180.0022
LEU 190.0023
TYR 200.0036
GLN 210.0045
ASP 220.0042
LEU 230.0059
PRO 240.0078
VAL 250.0084
ARG 260.0070
SER 270.0053
GLU 280.0043
PHE 290.0032
GLU 300.0031
LEU 310.0021
ASP 320.0019
ARG 330.0011
ILE 340.0011
CYS 350.0021
GLY 360.0037
TYR 370.0046
GLY 380.0033
THR 390.0038
ALA 400.0022
ARG 410.0012
CYS 420.0008
ARG 430.0010
LYS 440.0011
LYS 450.0014
CYS 460.0017
ARG 470.0022
SER 480.0027
GLN 490.0027
GLU 500.0022
TYR 510.0021
ARG 520.0015
ILE 530.0019
GLY 540.0016
ARG 550.0014
CYS 560.0012
PRO 570.0019
ASN 580.0018
THR 590.0013
TYR 600.0009
ALA 610.0011
CYS 620.0014
CYS 630.0015
LEU 640.0020
ARG 650.0023
LYS 660.0035
TRP 670.0028
ASP 680.0024
GLU 690.0013
SER 700.0020
LEU 710.0013
LEU 720.0009
ASN 730.0023
ARG 740.0013
THR 750.0031
LYS 760.0062
PRO 770.0085
GLU 780.0111
ALA 790.0112
ALA 800.0109
ALA 810.0142
LYS 820.0137
LYS 830.0136
GLU 840.0132
MET 850.0130
ASN 860.0127
LEU 870.0117
SER 880.0113
VAL 890.0111
GLY 900.0107
LEU 910.0121
GLY 920.0121
GLY 930.0137
GLY 940.0129
SER 950.0141
ASN 960.0128
LEU 970.0131
SER 980.0134
VAL 990.0134
GLY 1000.0142
LEU 1010.0113
GLY 1020.0075
GLU 1030.0163
ILE 1040.0205
GLY 1050.0307
GLY 1060.0437
GLY 1070.0312
SER 1080.0223
LYS 1090.0111
LEU 1100.0061
LEU 1110.0108
ASP 1120.0115
ILE 1130.0098
ASN 1140.0120
LEU 1150.0108
GLY 1160.0178
ARG 1170.0203
GLY 1180.0196
GLY 1190.0178
GLY 1200.0146
SER 1210.0119
MET 1220.0094
VAL 1230.0077
ASP 1240.0055
LEU 1250.0056
THR 1260.0046
PHE 1270.0051
GLY 1280.0051
GLY 1290.0054
VAL 1300.0066
GLY 1310.0055
GLY 1320.0042
GLY 1330.0034
SER 1340.0026
THR 1350.0030
PHE 1360.0044
THR 1370.0057
PHE 1380.0058
PHE 1390.0065
PRO 1400.0070
LEU 1410.0073
VAL 1420.0100
ILE 1430.0155
GLY 1440.0193
GLY 1450.0286
GLY 1460.0230
SER 1470.0164
ASP 1480.0088
ALA 1490.0091
MET 1500.0057
TYR 1510.0101
LEU 1520.0057
GLY 1530.0049
PHE 1540.0033
ALA 1550.0041
ALA 1560.0032
GLY 1570.0032
GLY 1580.0022
GLY 1590.0014
SER 1600.0023
ALA 1610.0061
GLY 1620.0067
GLY 1630.0070
GLU 1640.0064
ASN 1650.0058
HIS 1660.0048
VAL 1670.0047
ALA 1680.0057
PHE 1690.0072
GLY 1700.0089
PRO 1710.0274
GLY 1720.0283
PRO 1730.0265
GLY 1740.0180
VAL 1750.0100
ASP 1760.0081
LEU 1770.0070
THR 1780.0073
PHE 1790.0074
GLY 1800.0085
GLY 1810.0095
VAL 1820.0098
GLN 1830.0091
PHE 1840.0088
ALA 1850.0094
MET 1860.0079
VAL 1870.0088
ASN 1880.0118
ASN 1890.0092
GLY 1900.0163
PRO 1910.0208
GLY 1920.0175
PRO 1930.0117
GLY 1940.0098
GLU 1950.0131
SER 1960.0119
PHE 1970.0099
THR 1980.0076
ALA 1990.0068
GLN 2000.0070
PRO 2010.0030
ALA 2020.0081
ASP 2030.0065
MET 2040.0047
GLN 2050.0097
ALA 2060.0085
GLY 2070.0089
ILE 2080.0108
LYS 2090.0128
GLY 2100.0159
PRO 2110.0141
GLY 2120.0069
PRO 2130.0086
GLY 2140.0158
GLY 2150.0223
SER 2160.0442
ILE 2170.0380
GLN 2180.0231
VAL 2190.0350
ILE 2200.0255
ASN 2210.0266
GLY 2220.0210
SER 2230.0094
THR 2240.0186
ILE 2250.0229
GLY 2260.0271
THR 2270.0170
GLY 2280.0233
SER 2290.0256
LYS 2300.0260
LYS 2310.0271
THR 2320.0328
ILE 2330.0305
LEU 2340.0353
ILE 2350.0403
TYR 2360.0401
SER 2370.0361
ILE 2380.0298
ILE 2390.0167
GLY 2400.0251
VAL 2410.0368
LYS 2420.0386
LYS 2430.0484
GLY 2440.0426
THR 2450.0307
LEU 2460.0201
ALA 2470.0096
TRP 2480.0089
ALA 2490.0154
ARG 2500.0272
THR 2510.0379
GLY 2520.0311
PHE 2530.0263
SER 2540.0248
PRO 2550.0223
ALA 2560.0352
LYS 2570.0339
LYS 2580.0277
LEU 2590.0419
ASN 2600.0788
ALA 2610.1093
GLY 2620.0711
VAL 2630.0644
VAL 2640.0364
ARG 2650.0330
VAL 2660.0199
PHE 2670.0185
PHE 2680.0168
LEU 2690.0184
ASN 2700.0263
GLN 2710.0290
LYS 2720.0300
LYS 2730.0234
ALA 2740.0210
LYS 2750.0242
ASP 2760.0192
VAL 2770.0162
LEU 2780.0228
ARG 2790.0201
LYS 2800.0198
THR 2810.0231
SER 2820.0266
ARG 2830.0216
PRO 2840.0286
MET 2850.0340
VAL 2860.0555
ASP 2870.0489
LEU 2880.0102
THR 2890.0458
PHE 2900.0178
GLY 2910.0389
GLY 2920.0926

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.