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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 53  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0901
THR 260.0068
LYS 270.0061
CYS 280.0047
THR 290.0047
VAL 300.0051
SER 310.0056
HIS 320.0061
GLU 330.0044
VAL 340.0037
ALA 350.0026
ASP 360.0023
CYS 370.0027
SER 380.0023
HIS 390.0036
LEU 400.0044
LYS 410.0031
LEU 420.0023
THR 430.0018
GLN 440.0012
VAL 450.0013
PRO 460.0016
ASP 470.0018
ASP 480.0027
LEU 490.0030
PRO 500.0037
THR 510.0032
ASN 520.0042
ILE 530.0035
THR 540.0038
VAL 550.0031
LEU 560.0018
ASN 570.0013
LEU 580.0013
THR 590.0015
HIS 600.0022
ASN 610.0021
GLN 620.0021
LEU 630.0013
ARG 640.0021
ARG 650.0023
LEU 660.0023
PRO 670.0028
ALA 680.0036
ALA 690.0033
ASN 700.0023
PHE 710.0026
THR 720.0033
ARG 730.0031
TYR 740.0034
SER 750.0045
GLN 760.0044
LEU 770.0038
THR 780.0043
SER 790.0034
LEU 800.0025
ASP 810.0015
VAL 820.0010
GLY 830.0009
PHE 840.0012
ASN 850.0013
THR 860.0022
ILE 870.0021
SER 880.0032
LYS 890.0036
LEU 900.0034
GLU 910.0043
PRO 920.0050
GLU 930.0055
LEU 940.0045
CYS 950.0049
GLN 960.0059
LYS 970.0054
LEU 980.0050
PRO 990.0060
MET 1000.0058
LEU 1010.0047
LYS 1020.0045
VAL 1030.0035
LEU 1040.0026
ASN 1050.0016
LEU 1060.0009
GLN 1070.0007
HIS 1080.0014
ASN 1090.0016
GLU 1100.0026
LEU 1110.0023
SER 1120.0031
GLN 1130.0037
LEU 1140.0033
SER 1150.0043
ASP 1160.0047
LYS 1170.0053
THR 1180.0042
PHE 1190.0038
ALA 1200.0050
PHE 1210.0057
CYS 1220.0048
THR 1230.0054
ASN 1240.0054
LEU 1250.0042
THR 1260.0038
GLU 1270.0029
LEU 1280.0018
HIS 1290.0011
LEU 1300.0004
MET 1310.0013
SER 1320.0020
ASN 1330.0018
SER 1340.0027
ILE 1350.0023
GLN 1360.0029
LYS 1370.0029
ILE 1380.0022
LYS 1390.0030
ASN 1400.0032
ASN 1410.0028
PRO 1420.0027
PHE 1430.0022
VAL 1440.0029
LYS 1450.0039
GLN 1460.0032
LYS 1470.0037
ASN 1480.0041
LEU 1490.0031
ILE 1500.0034
THR 1510.0024
LEU 1520.0015
ASP 1530.0014
LEU 1540.0012
SER 1550.0021
HIS 1560.0026
ASN 1570.0023
GLY 1580.0029
LEU 1590.0024
SER 1600.0029
SER 1610.0025
THR 1620.0020
LYS 1630.0014
LEU 1640.0005
GLY 1650.0003
THR 1660.0012
GLN 1670.0006
VAL 1680.0009
GLN 1690.0014
LEU 1700.0018
GLU 1710.0023
ASN 1720.0029
LEU 1730.0023
GLN 1740.0031
GLU 1750.0028
LEU 1760.0023
LEU 1770.0024
LEU 1780.0024
SER 1790.0029
ASN 1800.0032
ASN 1810.0029
LYS 1820.0031
ILE 1830.0029
GLN 1840.0033
ALA 1850.0033
LEU 1860.0035
LYS 1870.0035
SER 1880.0034
GLU 1890.0029
GLU 1900.0026
LEU 1910.0025
ASP 1920.0024
ILE 1930.0017
PHE 1940.0023
ALA 1950.0028
ASN 1960.0026
SER 1970.0026
SER 1980.0031
LEU 1990.0030
LYS 2000.0034
LYS 2010.0032
LEU 2020.0032
GLU 2030.0031
LEU 2040.0032
SER 2050.0033
SER 2060.0031
ASN 2070.0032
GLN 2080.0034
ILE 2090.0035
LYS 2100.0037
GLU 2110.0039
PHE 2120.0039
SER 2130.0043
PRO 2140.0045
GLY 2150.0045
CYS 2160.0040
PHE 2170.0039
HIS 2180.0042
ALA 2190.0038
ILE 2200.0035
GLY 2210.0038
ARG 2220.0038
LEU 2230.0036
PHE 2240.0036
GLY 2250.0034
LEU 2260.0034
PHE 2270.0031
LEU 2280.0031
ASN 2290.0029
ASN 2300.0029
VAL 2310.0031
GLN 2320.0029
LEU 2330.0030
GLY 2340.0027
PRO 2350.0026
SER 2360.0032
LEU 2370.0033
THR 2380.0029
GLU 2390.0031
LYS 2400.0036
LEU 2410.0035
CYS 2420.0033
LEU 2430.0038
GLU 2440.0040
LEU 2450.0038
ALA 2460.0040
ASN 2470.0043
THR 2480.0041
SER 2490.0040
ILE 2500.0036
ARG 2510.0029
ASN 2520.0028
LEU 2530.0026
SER 2540.0024
LEU 2550.0023
SER 2560.0018
ASN 2570.0017
SER 2580.0022
GLN 2590.0021
LEU 2600.0017
SER 2610.0019
THR 2620.0018
THR 2630.0014
SER 2640.0016
ASN 2650.0014
THR 2660.0021
THR 2670.0020
PHE 2680.0019
LEU 2690.0022
GLY 2700.0028
LEU 2710.0025
LYS 2720.0026
TRP 2730.0032
THR 2740.0031
ASN 2750.0031
LEU 2760.0023
THR 2770.0026
MET 2780.0023
LEU 2790.0017
ASP 2800.0016
LEU 2810.0010
SER 2820.0009
TYR 2830.0006
ASN 2840.0009
ASN 2850.0014
LEU 2860.0013
ASN 2870.0021
VAL 2880.0023
VAL 2890.0019
GLY 2900.0021
ASN 2910.0025
ASP 2920.0022
SER 2930.0016
PHE 2940.0019
ALA 2950.0023
TRP 2960.0017
LEU 2970.0020
PRO 2980.0025
GLN 2990.0029
LEU 3000.0025
GLU 3010.0032
TYR 3020.0028
PHE 3030.0023
PHE 3040.0019
LEU 3050.0017
GLU 3060.0016
TYR 3070.0014
ASN 3080.0014
ASN 3090.0021
ILE 3100.0023
GLN 3110.0032
HIS 3120.0035
LEU 3130.0034
PHE 3140.0036
SER 3150.0041
HIS 3160.0036
SER 3170.0031
LEU 3180.0032
HIS 3190.0034
GLY 3200.0034
LEU 3210.0033
PHE 3220.0040
ASN 3230.0040
VAL 3240.0036
ARG 3250.0040
TYR 3260.0035
LEU 3270.0033
ASN 3280.0031
LEU 3290.0030
LYS 3300.0029
ARG 3310.0024
SER 3320.0022
PHE 3330.0028
THR 3340.0030
LYS 3350.0033
GLN 3360.0045
SER 3370.0053
ILE 3380.0070
SER 3390.0083
LEU 3400.0079
ALA 3410.0063
SER 3420.0050
LEU 3430.0046
PRO 3440.0034
LYS 3450.0038
ILE 3460.0040
ASP 3470.0044
ASP 3480.0047
PHE 3490.0048
SER 3500.0043
PHE 3510.0044
GLN 3520.0048
TRP 3530.0046
LEU 3540.0045
LYS 3550.0049
CYS 3560.0047
LEU 3570.0045
GLU 3580.0044
HIS 3590.0042
LEU 3600.0041
ASN 3610.0038
MET 3620.0038
GLU 3630.0036
ASP 3640.0034
ASN 3650.0035
ASP 3660.0038
ILE 3670.0038
PRO 3680.0039
GLY 3690.0039
ILE 3700.0039
LYS 3710.0041
SER 3720.0043
ASN 3730.0045
MET 3740.0043
PHE 3750.0043
THR 3760.0047
GLY 3770.0049
LEU 3780.0047
ILE 3790.0049
ASN 3800.0048
LEU 3810.0044
LYS 3820.0041
TYR 3830.0040
LEU 3840.0038
SER 3850.0037
LEU 3860.0036
SER 3870.0034
ASN 3880.0034
SER 3890.0036
PHE 3900.0035
THR 3910.0041
SER 3920.0032
LEU 3930.0024
ARG 3940.0020
THR 3950.0017
LEU 3960.0017
THR 3970.0018
ASN 3980.0015
GLU 3990.0017
THR 4000.0023
PHE 4010.0025
VAL 4020.0027
SER 4030.0035
LEU 4040.0035
ALA 4050.0035
HIS 4060.0035
SER 4070.0038
PRO 4080.0039
LEU 4090.0035
HIS 4100.0036
ILE 4110.0032
LEU 4120.0027
ASN 4130.0026
LEU 4140.0023
THR 4150.0023
LYS 4160.0026
ASN 4170.0027
LYS 4180.0028
ILE 4190.0022
SER 4200.0028
LYS 4210.0028
ILE 4220.0024
GLU 4230.0030
SER 4240.0033
ASP 4250.0029
ALA 4260.0013
PHE 4270.0016
SER 4280.0022
TRP 4290.0022
LEU 4300.0028
GLY 4310.0025
HIS 4320.0033
LEU 4330.0027
GLU 4340.0034
VAL 4350.0027
LEU 4360.0017
ASP 4370.0013
LEU 4380.0009
GLY 4390.0011
LEU 4400.0019
ASN 4410.0024
GLU 4420.0034
ILE 4430.0031
GLY 4440.0044
GLN 4450.0048
GLU 4460.0058
LEU 4470.0052
THR 4480.0063
GLY 4490.0058
GLN 4500.0058
GLU 4510.0038
TRP 4520.0038
ARG 4530.0045
GLY 4540.0044
LEU 4550.0042
GLU 4560.0047
ASN 4570.0045
ILE 4580.0037
PHE 4590.0040
GLU 4600.0028
ILE 4610.0022
TYR 4620.0011
LEU 4630.0014
SER 4640.0011
TYR 4650.0021
ASN 4660.0028
LYS 4670.0042
TYR 4680.0047
LEU 4690.0045
GLN 4700.0057
LEU 4710.0059
THR 4720.0073
ARG 4730.0081
ASN 4740.0078
SER 4750.0063
PHE 4760.0057
ALA 4770.0071
LEU 4780.0070
VAL 4790.0062
PRO 4800.0070
SER 4810.0065
LEU 4820.0052
GLN 4830.0050
ARG 4840.0036
LEU 4850.0029
MET 4860.0017
LEU 4870.0020
ARG 4880.0015
ARG 4890.0026
VAL 4900.0031
ALA 4910.0044
LEU 4920.0043
LYS 4930.0056
ASN 4940.0064
VAL 4950.0055
ASP 4960.0062
SER 4970.0073
SER 4980.0083
PRO 4990.0081
SER 5000.0065
PRO 5010.0063
PHE 5020.0055
GLN 5030.0067
PRO 5040.0075
LEU 5050.0064
ARG 5060.0073
ASN 5070.0072
LEU 5080.0055
THR 5090.0050
ILE 5100.0035
LEU 5110.0026
ASP 5120.0016
LEU 5130.0018
SER 5140.0015
ASN 5150.0024
ASN 5160.0030
ASN 5170.0036
ILE 5180.0036
ALA 5190.0042
ASN 5200.0043
ILE 5210.0038
ASN 5220.0043
ASP 5230.0036
ASP 5240.0043
MET 5250.0039
LEU 5260.0028
GLU 5270.0039
GLY 5280.0050
LEU 5290.0044
GLU 5300.0050
LYS 5310.0058
LEU 5320.0043
GLU 5330.0048
ILE 5340.0042
LEU 5350.0024
ASP 5360.0019
LEU 5370.0017
GLN 5380.0022
HIS 5390.0025
ASN 5400.0025
ASN 5410.0027
LEU 5420.0025
ALA 5430.0030
ARG 5440.0033
LEU 5450.0027
TRP 5460.0029
LYS 5470.0037
HIS 5480.0042
ALA 5490.0046
ASN 5500.0038
PRO 5510.0044
GLY 5520.0037
GLY 5530.0033
PRO 5540.0029
ILE 5550.0025
TYR 5560.0020
PHE 5570.0015
LEU 5580.0019
LYS 5590.0018
GLY 5600.0022
LEU 5610.0018
SER 5620.0026
HIS 5630.0036
LEU 5640.0034
HIS 5650.0046
ILE 5660.0044
LEU 5670.0035
ASN 5680.0033
LEU 5690.0029
GLU 5700.0033
SER 5710.0026
ASN 5720.0026
GLY 5730.0027
PHE 5740.0030
ASP 5750.0033
GLU 5760.0039
ILE 5770.0039
PRO 5780.0041
VAL 5790.0050
GLU 5800.0043
VAL 5810.0037
PHE 5820.0043
LYS 5830.0044
ASP 5840.0039
LEU 5850.0043
PHE 5860.0046
GLU 5870.0047
LEU 5880.0049
LYS 5890.0060
ILE 5900.0061
ILE 5910.0054
ASP 5920.0047
LEU 5930.0042
GLY 5940.0038
LEU 5950.0029
ASN 5960.0025
ASN 5970.0024
LEU 5980.0033
ASN 5990.0034
THR 6000.0048
LEU 6010.0054
PRO 6020.0065
ALA 6030.0078
SER 6040.0081
VAL 6050.0067
PHE 6060.0072
ASN 6070.0082
ASN 6080.0076
GLN 6090.0075
VAL 6100.0086
SER 6110.0089
LEU 6120.0083
LYS 6130.0086
SER 6140.0078
LEU 6150.0070
ASN 6160.0059
LEU 6170.0043
GLN 6180.0034
LYS 6190.0021
ASN 6200.0019
LEU 6210.0024
ILE 6220.0030
THR 6230.0040
SER 6240.0052
VAL 6250.0053
GLU 6260.0070
LYS 6270.0090
LYS 6280.0102
VAL 6290.0086
PHE 6300.0081
GLY 6310.0098
PRO 6320.0108
ALA 6330.0094
PHE 6340.0096
ARG 6350.0116
ASN 6360.0117
LEU 6370.0103
THR 6380.0109
GLU 6390.0093
LEU 6400.0075
ASP 6410.0065
MET 6420.0042
ARG 6430.0044
PHE 6440.0040
ASN 6450.0025
PRO 6460.0048
PHE 6470.0040
ASP 6480.0064
CYS 6490.0062
THR 6500.0077
CYS 6510.0063
GLU 6520.0086
SER 6530.0064
ILE 6540.0034
ALA 6550.0038
TRP 6560.0061
PHE 6570.0051
VAL 6580.0046
ASN 6590.0066
TRP 6600.0084
ILE 6610.0083
ASN 6620.0087
GLU 6630.0099
THR 6640.0108
HIS 6650.0124
THR 6660.0112
ASN 6670.0112
ILE 6680.0087
PRO 6690.0097
GLU 6700.0092
LEU 6710.0093
SER 6720.0106
SER 6730.0111
HIS 6740.0082
TYR 6750.0060
LEU 6760.0082
CYS 6770.0080
ASN 6780.0102
THR 6790.0114
PRO 6800.0133
PRO 6810.0172
HIS 6820.0166
TYR 6830.0128
HIS 6840.0144
GLY 6850.0142
PHE 6860.0119
PRO 6870.0096
VAL 6880.0059
ARG 6890.0074
LEU 6900.0090
PHE 6910.0060
ASP 6920.0048
THR 6930.0026
SER 6940.0027
SER 6950.0056
CYS 6960.0070
GLU 10.0118
ALA 20.0107
ALA 30.0095
ALA 40.0084
LYS 50.0071
MET 60.0064
GLN 70.0058
ARG 80.0044
LEU 90.0041
VAL 100.0039
LEU 110.0032
LEU 120.0021
LEU 130.0022
ALA 140.0021
ILE 150.0013
SER 160.0016
LEU 170.0024
LEU 180.0030
LEU 190.0034
TYR 200.0054
GLN 210.0084
ASP 220.0086
LEU 230.0125
PRO 240.0171
VAL 250.0172
ARG 260.0140
SER 270.0146
GLU 280.0102
PHE 290.0118
GLU 300.0146
LEU 310.0122
ASP 320.0086
ARG 330.0078
ILE 340.0080
CYS 350.0069
GLY 360.0098
TYR 370.0129
GLY 380.0087
THR 390.0063
ALA 400.0031
ARG 410.0012
CYS 420.0017
ARG 430.0028
LYS 440.0045
LYS 450.0052
CYS 460.0056
ARG 470.0064
SER 480.0082
GLN 490.0073
GLU 500.0060
TYR 510.0064
ARG 520.0047
ILE 530.0050
GLY 540.0035
ARG 550.0020
CYS 560.0027
PRO 570.0046
ASN 580.0041
THR 590.0018
TYR 600.0014
ALA 610.0015
CYS 620.0017
CYS 630.0031
LEU 640.0045
ARG 650.0057
LYS 660.0089
TRP 670.0098
ASP 680.0066
GLU 690.0071
SER 700.0099
LEU 710.0058
LEU 720.0106
ASN 730.0146
ARG 740.0090
THR 750.0086
LYS 760.0206
PRO 770.0155
GLU 780.0396
ALA 790.0395
ALA 800.0172
ALA 810.0032
LYS 820.0059
LYS 830.0061
GLU 840.0106
MET 850.0112
ASN 860.0125
LEU 870.0094
SER 880.0088
VAL 890.0062
GLY 900.0078
LEU 910.0083
GLY 920.0144
GLY 930.0168
GLY 940.0159
SER 950.0097
ASN 960.0087
LEU 970.0070
SER 980.0095
VAL 990.0097
GLY 1000.0129
LEU 1010.0110
GLY 1020.0120
GLU 1030.0111
ILE 1040.0132
GLY 1050.0138
GLY 1060.0128
GLY 1070.0095
SER 1080.0092
LYS 1090.0080
LEU 1100.0098
LEU 1110.0100
ASP 1120.0096
ILE 1130.0072
ASN 1140.0119
LEU 1150.0125
GLY 1160.0199
ARG 1170.0262
GLY 1180.0198
GLY 1190.0241
GLY 1200.0242
SER 1210.0131
MET 1220.0112
VAL 1230.0064
ASP 1240.0072
LEU 1250.0059
THR 1260.0057
PHE 1270.0059
GLY 1280.0058
GLY 1290.0062
VAL 1300.0063
GLY 1310.0016
GLY 1320.0014
GLY 1330.0013
SER 1340.0032
THR 1350.0047
PHE 1360.0079
THR 1370.0106
PHE 1380.0073
PHE 1390.0098
PRO 1400.0068
LEU 1410.0061
VAL 1420.0073
ILE 1430.0070
GLY 1440.0090
GLY 1450.0114
GLY 1460.0097
SER 1470.0089
ASP 1480.0101
ALA 1490.0067
MET 1500.0059
TYR 1510.0057
LEU 1520.0054
GLY 1530.0081
PHE 1540.0079
ALA 1550.0110
ALA 1560.0054
GLY 1570.0051
GLY 1580.0040
GLY 1590.0029
SER 1600.0015
ALA 1610.0055
GLY 1620.0055
GLY 1630.0062
GLU 1640.0075
ASN 1650.0081
HIS 1660.0078
VAL 1670.0047
ALA 1680.0052
PHE 1690.0049
GLY 1700.0080
PRO 1710.0309
GLY 1720.0313
PRO 1730.0286
GLY 1740.0149
VAL 1750.0051
ASP 1760.0057
LEU 1770.0067
THR 1780.0099
PHE 1790.0125
GLY 1800.0158
GLY 1810.0181
VAL 1820.0146
GLN 1830.0107
PHE 1840.0063
ALA 1850.0058
MET 1860.0182
VAL 1870.0417
ASN 1880.0544
ASN 1890.0799
GLY 1900.0901
PRO 1910.0596
GLY 1920.0640
PRO 1930.0535
GLY 1940.0509
GLU 1950.0149
SER 1960.0231
PHE 1970.0358
THR 1980.0131
ALA 1990.0210
GLN 2000.0164
PRO 2010.0031
ALA 2020.0230
ASP 2030.0331
MET 2040.0283
GLN 2050.0099
ALA 2060.0043
GLY 2070.0215
ILE 2080.0231
LYS 2090.0402
GLY 2100.0552
PRO 2110.0482
GLY 2120.0291
PRO 2130.0200
GLY 2140.0372
GLY 2150.0555
SER 2160.0839
ILE 2170.0533
GLN 2180.0412
VAL 2190.0325
ILE 2200.0221
ASN 2210.0259
GLY 2220.0244
SER 2230.0319
THR 2240.0303
ILE 2250.0300
GLY 2260.0309
THR 2270.0288
GLY 2280.0209
SER 2290.0212
LYS 2300.0166
LYS 2310.0161
THR 2320.0188
ILE 2330.0184
LEU 2340.0250
ILE 2350.0248
TYR 2360.0244
SER 2370.0204
ILE 2380.0159
ILE 2390.0104
GLY 2400.0139
VAL 2410.0137
LYS 2420.0186
LYS 2430.0135
GLY 2440.0138
THR 2450.0222
LEU 2460.0149
ALA 2470.0117
TRP 2480.0112
ALA 2490.0031
ARG 2500.0103
THR 2510.0169
GLY 2520.0128
PHE 2530.0122
SER 2540.0084
PRO 2550.0072
ALA 2560.0075
LYS 2570.0118
LYS 2580.0054
LEU 2590.0156
ASN 2600.0203
ALA 2610.0294
GLY 2620.0247
VAL 2630.0227
VAL 2640.0210
ARG 2650.0166
VAL 2660.0183
PHE 2670.0117
PHE 2680.0084
LEU 2690.0103
ASN 2700.0175
GLN 2710.0141
LYS 2720.0100
LYS 2730.0099
ALA 2740.0142
LYS 2750.0164
ASP 2760.0102
VAL 2770.0123
LEU 2780.0211
ARG 2790.0170
LYS 2800.0091
THR 2810.0220
SER 2820.0176
ARG 2830.0151
PRO 2840.0100
MET 2850.0088
VAL 2860.0067
ASP 2870.0140
LEU 2880.0119
THR 2890.0243
PHE 2900.0175
GLY 2910.0277
GLY 2920.0468

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.