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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 56  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1072
THR 260.0068
LYS 270.0056
CYS 280.0035
THR 290.0040
VAL 300.0051
SER 310.0069
HIS 320.0089
GLU 330.0066
VAL 340.0052
ALA 350.0023
ASP 360.0033
CYS 370.0038
SER 380.0058
HIS 390.0077
LEU 400.0075
LYS 410.0103
LEU 420.0086
THR 430.0087
GLN 440.0075
VAL 450.0056
PRO 460.0054
ASP 470.0060
ASP 480.0062
LEU 490.0046
PRO 500.0051
THR 510.0053
ASN 520.0056
ILE 530.0038
THR 540.0047
VAL 550.0043
LEU 560.0038
ASN 570.0053
LEU 580.0059
THR 590.0082
HIS 600.0101
ASN 610.0093
GLN 620.0098
LEU 630.0070
ARG 640.0069
ARG 650.0045
LEU 660.0036
PRO 670.0047
ALA 680.0047
ALA 690.0066
ASN 700.0056
PHE 710.0040
THR 720.0057
ARG 730.0057
TYR 740.0041
SER 750.0052
GLN 760.0052
LEU 770.0039
THR 780.0056
SER 790.0053
LEU 800.0042
ASP 810.0061
VAL 820.0060
GLY 830.0081
PHE 840.0096
ASN 850.0086
THR 860.0076
ILE 870.0050
SER 880.0040
LYS 890.0024
LEU 900.0017
GLU 910.0029
PRO 920.0044
GLU 930.0054
LEU 940.0032
CYS 950.0045
GLN 960.0065
LYS 970.0055
LEU 980.0044
PRO 990.0066
MET 1000.0064
LEU 1010.0062
LYS 1020.0082
VAL 1030.0078
LEU 1040.0061
ASN 1050.0068
LEU 1060.0059
GLN 1070.0079
HIS 1080.0084
ASN 1090.0066
GLU 1100.0056
LEU 1110.0036
SER 1120.0030
GLN 1130.0025
LEU 1140.0037
SER 1150.0049
ASP 1160.0066
LYS 1170.0060
THR 1180.0043
PHE 1190.0057
ALA 1200.0073
PHE 1210.0073
CYS 1220.0069
THR 1230.0092
ASN 1240.0092
LEU 1250.0086
THR 1260.0112
GLU 1270.0104
LEU 1280.0086
HIS 1290.0084
LEU 1300.0069
MET 1310.0081
SER 1320.0075
ASN 1330.0056
SER 1340.0050
ILE 1350.0041
GLN 1360.0036
LYS 1370.0043
ILE 1380.0053
LYS 1390.0060
ASN 1400.0074
ASN 1410.0079
PRO 1420.0068
PHE 1430.0081
VAL 1440.0096
LYS 1450.0095
GLN 1460.0099
LYS 1470.0119
ASN 1480.0122
LEU 1490.0111
ILE 1500.0123
THR 1510.0115
LEU 1520.0098
ASP 1530.0092
LEU 1540.0078
SER 1550.0083
HIS 1560.0073
ASN 1570.0058
GLY 1580.0045
LEU 1590.0046
SER 1600.0043
SER 1610.0053
THR 1620.0066
LYS 1630.0068
LEU 1640.0071
GLY 1650.0078
THR 1660.0091
GLN 1670.0102
VAL 1680.0108
GLN 1690.0105
LEU 1700.0107
GLU 1710.0127
ASN 1720.0131
LEU 1730.0117
GLN 1740.0124
GLU 1750.0112
LEU 1760.0094
LEU 1770.0087
LEU 1780.0073
SER 1790.0074
ASN 1800.0066
ASN 1810.0055
LYS 1820.0042
ILE 1830.0041
GLN 1840.0032
ALA 1850.0037
LEU 1860.0046
LYS 1870.0050
SER 1880.0061
GLU 1890.0066
GLU 1900.0063
LEU 1910.0076
ASP 1920.0085
ILE 1930.0093
PHE 1940.0097
ALA 1950.0102
ASN 1960.0114
SER 1970.0108
SER 1980.0112
LEU 1990.0102
LYS 2000.0108
LYS 2010.0089
LEU 2020.0074
GLU 2030.0069
LEU 2040.0054
SER 2050.0056
SER 2060.0053
ASN 2070.0044
GLN 2080.0036
ILE 2090.0029
LYS 2100.0024
GLU 2110.0024
PHE 2120.0030
SER 2130.0033
PRO 2140.0037
GLY 2150.0045
CYS 2160.0050
PHE 2170.0055
HIS 2180.0059
ALA 2190.0071
ILE 2200.0079
GLY 2210.0083
ARG 2220.0082
LEU 2230.0073
PHE 2240.0076
GLY 2250.0070
LEU 2260.0045
PHE 2270.0043
LEU 2280.0033
ASN 2290.0039
ASN 2300.0036
VAL 2310.0030
GLN 2320.0030
LEU 2330.0023
GLY 2340.0027
PRO 2350.0025
SER 2360.0027
LEU 2370.0023
THR 2380.0023
GLU 2390.0022
LYS 2400.0020
LEU 2410.0027
CYS 2420.0026
LEU 2430.0023
GLU 2440.0027
LEU 2450.0030
ALA 2460.0027
ASN 2470.0034
THR 2480.0040
SER 2490.0046
ILE 2500.0044
ARG 2510.0039
ASN 2520.0036
LEU 2530.0027
SER 2540.0026
LEU 2550.0020
SER 2560.0014
ASN 2570.0019
SER 2580.0017
GLN 2590.0022
LEU 2600.0021
SER 2610.0023
THR 2620.0022
THR 2630.0023
SER 2640.0022
ASN 2650.0023
THR 2660.0026
THR 2670.0026
PHE 2680.0025
LEU 2690.0025
GLY 2700.0024
LEU 2710.0025
LYS 2720.0024
TRP 2730.0019
THR 2740.0022
ASN 2750.0026
LEU 2760.0029
THR 2770.0031
MET 2780.0029
LEU 2790.0024
ASP 2800.0023
LEU 2810.0024
SER 2820.0024
TYR 2830.0026
ASN 2840.0022
ASN 2850.0019
LEU 2860.0035
ASN 2870.0030
VAL 2880.0023
VAL 2890.0020
GLY 2900.0016
ASN 2910.0020
ASP 2920.0024
SER 2930.0024
PHE 2940.0028
ALA 2950.0030
TRP 2960.0030
LEU 2970.0032
PRO 2980.0033
GLN 2990.0034
LEU 3000.0034
GLU 3010.0036
TYR 3020.0035
PHE 3030.0030
PHE 3040.0030
LEU 3050.0025
GLU 3060.0032
TYR 3070.0036
ASN 3080.0035
ASN 3090.0035
ILE 3100.0029
GLN 3110.0039
HIS 3120.0031
LEU 3130.0025
PHE 3140.0019
SER 3150.0016
HIS 3160.0019
SER 3170.0022
LEU 3180.0026
HIS 3190.0027
GLY 3200.0033
LEU 3210.0033
PHE 3220.0036
ASN 3230.0040
VAL 3240.0038
ARG 3250.0040
TYR 3260.0037
LEU 3270.0031
ASN 3280.0033
LEU 3290.0029
LYS 3300.0034
ARG 3310.0038
SER 3320.0036
PHE 3330.0037
THR 3340.0048
LYS 3350.0051
GLN 3360.0069
SER 3370.0100
ILE 3380.0108
SER 3390.0142
LEU 3400.0145
ALA 3410.0103
SER 3420.0088
LEU 3430.0064
PRO 3440.0042
LYS 3450.0033
ILE 3460.0025
ASP 3470.0022
ASP 3480.0020
PHE 3490.0020
SER 3500.0022
PHE 3510.0024
GLN 3520.0023
TRP 3530.0028
LEU 3540.0032
LYS 3550.0034
CYS 3560.0036
LEU 3570.0034
GLU 3580.0036
HIS 3590.0038
LEU 3600.0034
ASN 3610.0032
MET 3620.0031
GLU 3630.0035
ASP 3640.0038
ASN 3650.0037
ASP 3660.0038
ILE 3670.0038
PRO 3680.0040
GLY 3690.0038
ILE 3700.0037
LYS 3710.0027
SER 3720.0024
ASN 3730.0024
MET 3740.0027
PHE 3750.0028
THR 3760.0023
GLY 3770.0025
LEU 3780.0029
ILE 3790.0029
ASN 3800.0033
LEU 3810.0030
LYS 3820.0032
TYR 3830.0034
LEU 3840.0032
SER 3850.0035
LEU 3860.0032
SER 3870.0033
ASN 3880.0036
SER 3890.0037
PHE 3900.0039
THR 3910.0040
SER 3920.0041
LEU 3930.0044
ARG 3940.0045
THR 3950.0049
LEU 3960.0043
THR 3970.0045
ASN 3980.0046
GLU 3990.0047
THR 4000.0045
PHE 4010.0037
VAL 4020.0036
SER 4030.0036
LEU 4040.0036
ALA 4050.0035
HIS 4060.0028
SER 4070.0029
PRO 4080.0030
LEU 4090.0031
HIS 4100.0032
ILE 4110.0032
LEU 4120.0033
ASN 4130.0033
LEU 4140.0033
THR 4150.0033
LYS 4160.0033
ASN 4170.0038
LYS 4180.0039
ILE 4190.0041
SER 4200.0043
LYS 4210.0047
ILE 4220.0045
GLU 4230.0049
SER 4240.0048
ASP 4250.0047
ALA 4260.0042
PHE 4270.0040
SER 4280.0040
TRP 4290.0042
LEU 4300.0039
GLY 4310.0037
HIS 4320.0036
LEU 4330.0033
GLU 4340.0031
VAL 4350.0029
LEU 4360.0030
ASP 4370.0027
LEU 4380.0029
GLY 4390.0024
LEU 4400.0023
ASN 4410.0031
GLU 4420.0037
ILE 4430.0039
GLY 4440.0044
GLN 4450.0048
GLU 4460.0049
LEU 4470.0042
THR 4480.0047
GLY 4490.0040
GLN 4500.0048
GLU 4510.0044
TRP 4520.0039
ARG 4530.0044
GLY 4540.0045
LEU 4550.0038
GLU 4560.0039
ASN 4570.0038
ILE 4580.0031
PHE 4590.0025
GLU 4600.0021
ILE 4610.0020
TYR 4620.0015
LEU 4630.0018
SER 4640.0012
TYR 4650.0014
ASN 4660.0025
LYS 4670.0036
TYR 4680.0040
LEU 4690.0037
GLN 4700.0043
LEU 4710.0038
THR 4720.0042
ARG 4730.0039
ASN 4740.0038
SER 4750.0034
PHE 4760.0026
ALA 4770.0030
LEU 4780.0035
VAL 4790.0028
PRO 4800.0022
SER 4810.0024
LEU 4820.0018
GLN 4830.0017
ARG 4840.0014
LEU 4850.0010
MET 4860.0009
LEU 4870.0014
ARG 4880.0017
ARG 4890.0022
VAL 4900.0025
ALA 4910.0036
LEU 4920.0032
LYS 4930.0043
ASN 4940.0045
VAL 4950.0036
ASP 4960.0041
SER 4970.0041
SER 4980.0044
PRO 4990.0035
SER 5000.0028
PRO 5010.0025
PHE 5020.0017
GLN 5030.0016
PRO 5040.0014
LEU 5050.0010
ARG 5060.0011
ASN 5070.0017
LEU 5080.0014
THR 5090.0024
ILE 5100.0022
LEU 5110.0021
ASP 5120.0024
LEU 5130.0027
SER 5140.0034
ASN 5150.0037
ASN 5160.0036
ASN 5170.0043
ILE 5180.0040
ALA 5190.0046
ASN 5200.0043
ILE 5210.0038
ASN 5220.0038
ASP 5230.0038
ASP 5240.0030
MET 5250.0027
LEU 5260.0023
GLU 5270.0022
GLY 5280.0017
LEU 5290.0018
GLU 5300.0023
LYS 5310.0027
LEU 5320.0027
GLU 5330.0034
ILE 5340.0035
LEU 5350.0035
ASP 5360.0041
LEU 5370.0043
GLN 5380.0049
HIS 5390.0052
ASN 5400.0050
ASN 5410.0051
LEU 5420.0048
ALA 5430.0054
ARG 5440.0054
LEU 5450.0047
TRP 5460.0047
LYS 5470.0051
HIS 5480.0052
ALA 5490.0054
ASN 5500.0049
PRO 5510.0050
GLY 5520.0045
GLY 5530.0046
PRO 5540.0045
ILE 5550.0040
TYR 5560.0036
PHE 5570.0033
LEU 5580.0034
LYS 5590.0031
GLY 5600.0027
LEU 5610.0028
SER 5620.0032
HIS 5630.0033
LEU 5640.0036
HIS 5650.0043
ILE 5660.0050
LEU 5670.0049
ASN 5680.0054
LEU 5690.0054
GLU 5700.0060
SER 5710.0061
ASN 5720.0057
GLY 5730.0059
PHE 5740.0055
ASP 5750.0055
GLU 5760.0051
ILE 5770.0047
PRO 5780.0041
VAL 5790.0039
GLU 5800.0035
VAL 5810.0036
PHE 5820.0037
LYS 5830.0033
ASP 5840.0030
LEU 5850.0035
PHE 5860.0031
GLU 5870.0036
LEU 5880.0040
LYS 5890.0050
ILE 5900.0055
ILE 5910.0054
ASP 5920.0061
LEU 5930.0059
GLY 5940.0066
LEU 5950.0071
ASN 5960.0067
ASN 5970.0061
LEU 5980.0051
ASN 5990.0042
THR 6000.0036
LEU 6010.0035
PRO 6020.0029
ALA 6030.0024
SER 6040.0025
VAL 6050.0032
PHE 6060.0035
ASN 6070.0032
ASN 6080.0030
GLN 6090.0035
VAL 6100.0037
SER 6110.0040
LEU 6120.0043
LYS 6130.0052
SER 6140.0055
LEU 6150.0052
ASN 6160.0062
LEU 6170.0057
GLN 6180.0066
LYS 6190.0071
ASN 6200.0064
LEU 6210.0059
ILE 6220.0041
THR 6230.0033
SER 6240.0022
VAL 6250.0009
GLU 6260.0010
LYS 6270.0015
LYS 6280.0010
VAL 6290.0017
PHE 6300.0025
GLY 6310.0028
PRO 6320.0029
ALA 6330.0033
PHE 6340.0036
ARG 6350.0039
ASN 6360.0044
LEU 6370.0046
THR 6380.0057
GLU 6390.0056
LEU 6400.0049
ASP 6410.0061
MET 6420.0048
ARG 6430.0058
PHE 6440.0062
ASN 6450.0050
PRO 6460.0056
PHE 6470.0031
ASP 6480.0046
CYS 6490.0045
THR 6500.0070
CYS 6510.0082
GLU 6520.0080
SER 6530.0052
ILE 6540.0036
ALA 6550.0062
TRP 6560.0046
PHE 6570.0034
VAL 6580.0044
ASN 6590.0059
TRP 6600.0054
ILE 6610.0058
ASN 6620.0051
GLU 6630.0053
THR 6640.0061
HIS 6650.0065
THR 6660.0055
ASN 6670.0061
ILE 6680.0052
PRO 6690.0069
GLU 6700.0074
LEU 6710.0061
SER 6720.0058
SER 6730.0063
HIS 6740.0058
TYR 6750.0035
LEU 6760.0029
CYS 6770.0030
ASN 6780.0062
THR 6790.0079
PRO 6800.0089
PRO 6810.0102
HIS 6820.0091
TYR 6830.0059
HIS 6840.0062
GLY 6850.0041
PHE 6860.0010
PRO 6870.0014
VAL 6880.0017
ARG 6890.0043
LEU 6900.0048
PHE 6910.0053
ASP 6920.0090
THR 6930.0105
SER 6940.0141
SER 6950.0143
CYS 6960.0137
GLU 10.0274
ALA 20.0255
ALA 30.0204
ALA 40.0177
LYS 50.0178
MET 60.0151
GLN 70.0120
ARG 80.0101
LEU 90.0119
VAL 100.0107
LEU 110.0076
LEU 120.0079
LEU 130.0091
ALA 140.0075
ILE 150.0064
SER 160.0079
LEU 170.0054
LEU 180.0051
LEU 190.0069
TYR 200.0072
GLN 210.0058
ASP 220.0066
LEU 230.0132
PRO 240.0162
VAL 250.0177
ARG 260.0247
SER 270.0151
GLU 280.0178
PHE 290.0136
GLU 300.0062
LEU 310.0075
ASP 320.0082
ARG 330.0036
ILE 340.0122
CYS 350.0180
GLY 360.0293
TYR 370.0386
GLY 380.0313
THR 390.0332
ALA 400.0194
ARG 410.0115
CYS 420.0072
ARG 430.0050
LYS 440.0016
LYS 450.0045
CYS 460.0088
ARG 470.0102
SER 480.0108
GLN 490.0123
GLU 500.0112
TYR 510.0111
ARG 520.0086
ILE 530.0118
GLY 540.0105
ARG 550.0088
CYS 560.0100
PRO 570.0126
ASN 580.0099
THR 590.0088
TYR 600.0049
ALA 610.0055
CYS 620.0091
CYS 630.0097
LEU 640.0131
ARG 650.0147
LYS 660.0157
TRP 670.0158
ASP 680.0035
GLU 690.0165
SER 700.0159
LEU 710.0165
LEU 720.0336
ASN 730.0370
ARG 740.0290
THR 750.0422
LYS 760.0507
PRO 770.0498
GLU 780.0454
ALA 790.0543
ALA 800.0614
ALA 810.0344
LYS 820.0313
LYS 830.0272
GLU 840.0243
MET 850.0226
ASN 860.0181
LEU 870.0134
SER 880.0114
VAL 890.0077
GLY 900.0086
LEU 910.0101
GLY 920.0144
GLY 930.0201
GLY 940.0205
SER 950.0182
ASN 960.0153
LEU 970.0141
SER 980.0164
VAL 990.0166
GLY 1000.0207
LEU 1010.0159
GLY 1020.0120
GLU 1030.0152
ILE 1040.0136
GLY 1050.0229
GLY 1060.0489
GLY 1070.0373
SER 1080.0293
LYS 1090.0155
LEU 1100.0085
LEU 1110.0117
ASP 1120.0105
ILE 1130.0074
ASN 1140.0066
LEU 1150.0039
GLY 1160.0072
ARG 1170.0101
GLY 1180.0143
GLY 1190.0148
GLY 1200.0130
SER 1210.0071
MET 1220.0063
VAL 1230.0035
ASP 1240.0029
LEU 1250.0033
THR 1260.0038
PHE 1270.0077
GLY 1280.0093
GLY 1290.0114
VAL 1300.0153
GLY 1310.0103
GLY 1320.0111
GLY 1330.0100
SER 1340.0104
THR 1350.0097
PHE 1360.0091
THR 1370.0095
PHE 1380.0087
PHE 1390.0094
PRO 1400.0091
LEU 1410.0112
VAL 1420.0138
ILE 1430.0179
GLY 1440.0224
GLY 1450.0264
GLY 1460.0271
SER 1470.0213
ASP 1480.0139
ALA 1490.0137
MET 1500.0100
TYR 1510.0089
LEU 1520.0090
GLY 1530.0101
PHE 1540.0104
ALA 1550.0115
ALA 1560.0133
GLY 1570.0114
GLY 1580.0096
GLY 1590.0069
SER 1600.0049
ALA 1610.0058
GLY 1620.0053
GLY 1630.0052
GLU 1640.0057
ASN 1650.0064
HIS 1660.0055
VAL 1670.0063
ALA 1680.0067
PHE 1690.0072
GLY 1700.0087
PRO 1710.0043
GLY 1720.0038
PRO 1730.0028
GLY 1740.0063
VAL 1750.0093
ASP 1760.0092
LEU 1770.0084
THR 1780.0079
PHE 1790.0078
GLY 1800.0078
GLY 1810.0099
VAL 1820.0101
GLN 1830.0092
PHE 1840.0091
ALA 1850.0088
MET 1860.0127
VAL 1870.0273
ASN 1880.0370
ASN 1890.0606
GLY 1900.0672
PRO 1910.0508
GLY 1920.0558
PRO 1930.0477
GLY 1940.0388
GLU 1950.0135
SER 1960.0157
PHE 1970.0152
THR 1980.0136
ALA 1990.0128
GLN 2000.0122
PRO 2010.0030
ALA 2020.0110
ASP 2030.0093
MET 2040.0041
GLN 2050.0122
ALA 2060.0068
GLY 2070.0060
ILE 2080.0044
LYS 2090.0090
GLY 2100.0111
PRO 2110.0077
GLY 2120.0042
PRO 2130.0036
GLY 2140.0110
GLY 2150.0159
SER 2160.0351
ILE 2170.0247
GLN 2180.0048
VAL 2190.0147
ILE 2200.0290
ASN 2210.0147
GLY 2220.0103
SER 2230.0100
THR 2240.0119
ILE 2250.0142
GLY 2260.0181
THR 2270.0167
GLY 2280.0132
SER 2290.0107
LYS 2300.0111
LYS 2310.0109
THR 2320.0149
ILE 2330.0133
LEU 2340.0168
ILE 2350.0177
TYR 2360.0189
SER 2370.0151
ILE 2380.0139
ILE 2390.0085
GLY 2400.0136
VAL 2410.0166
LYS 2420.0148
LYS 2430.0108
GLY 2440.0062
THR 2450.0111
LEU 2460.0066
ALA 2470.0065
TRP 2480.0092
ALA 2490.0057
ARG 2500.0091
THR 2510.0072
GLY 2520.0064
PHE 2530.0071
SER 2540.0066
PRO 2550.0085
ALA 2560.0079
LYS 2570.0049
LYS 2580.0040
LEU 2590.0080
ASN 2600.0093
ALA 2610.0092
GLY 2620.0082
VAL 2630.0090
VAL 2640.0079
ARG 2650.0091
VAL 2660.0104
PHE 2670.0090
PHE 2680.0079
LEU 2690.0074
ASN 2700.0095
GLN 2710.0057
LYS 2720.0105
LYS 2730.0063
ALA 2740.0069
LYS 2750.0158
ASP 2760.0121
VAL 2770.0039
LEU 2780.0168
ARG 2790.0154
LYS 2800.0010
THR 2810.0174
SER 2820.0160
ARG 2830.0146
PRO 2840.0136
MET 2850.0139
VAL 2860.0216
ASP 2870.0293
LEU 2880.0203
THR 2890.0560
PHE 2900.0467
GLY 2910.0446
GLY 2920.1072

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.