CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 57  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0383
THR 260.0113
LYS 270.0088
CYS 280.0053
THR 290.0039
VAL 300.0048
SER 310.0055
HIS 320.0100
GLU 330.0110
VAL 340.0065
ALA 350.0026
ASP 360.0025
CYS 370.0039
SER 380.0072
HIS 390.0103
LEU 400.0097
LYS 410.0135
LEU 420.0117
THR 430.0144
GLN 440.0125
VAL 450.0089
PRO 460.0111
ASP 470.0137
ASP 480.0147
LEU 490.0111
PRO 500.0135
THR 510.0153
ASN 520.0161
ILE 530.0108
THR 540.0123
VAL 550.0097
LEU 560.0058
ASN 570.0069
LEU 580.0064
THR 590.0103
HIS 600.0128
ASN 610.0121
GLN 620.0152
LEU 630.0115
ARG 640.0145
ARG 650.0105
LEU 660.0075
PRO 670.0103
ALA 680.0099
ALA 690.0143
ASN 700.0117
PHE 710.0093
THR 720.0145
ARG 730.0153
TYR 740.0116
SER 750.0149
GLN 760.0166
LEU 770.0129
THR 780.0170
SER 790.0148
LEU 800.0102
ASP 810.0124
VAL 820.0104
GLY 830.0152
PHE 840.0178
ASN 850.0154
THR 860.0166
ILE 870.0125
SER 880.0146
LYS 890.0106
LEU 900.0052
GLU 910.0064
PRO 920.0057
GLU 930.0095
LEU 940.0065
CYS 950.0083
GLN 960.0128
LYS 970.0129
LEU 980.0119
PRO 990.0167
MET 1000.0185
LEU 1010.0170
LYS 1020.0206
VAL 1030.0200
LEU 1040.0154
ASN 1050.0177
LEU 1060.0153
GLN 1070.0212
HIS 1080.0237
ASN 1090.0197
GLU 1100.0201
LEU 1110.0156
SER 1120.0175
GLN 1130.0135
LEU 1140.0082
SER 1150.0055
ASP 1160.0042
LYS 1170.0058
THR 1180.0019
PHE 1190.0051
ALA 1200.0078
PHE 1210.0105
CYS 1220.0114
THR 1230.0166
ASN 1240.0199
LEU 1250.0183
THR 1260.0244
GLU 1270.0237
LEU 1280.0194
HIS 1290.0217
LEU 1300.0195
MET 1310.0247
SER 1320.0270
ASN 1330.0222
SER 1340.0245
ILE 1350.0193
GLN 1360.0197
LYS 1370.0156
ILE 1380.0101
LYS 1390.0098
ASN 1400.0081
ASN 1410.0034
PRO 1420.0016
PHE 1430.0061
VAL 1440.0087
LYS 1450.0119
GLN 1460.0142
LYS 1470.0189
ASN 1480.0228
LEU 1490.0202
ILE 1500.0246
THR 1510.0247
LEU 1520.0202
ASP 1530.0231
LEU 1540.0210
SER 1550.0266
HIS 1560.0302
ASN 1570.0266
GLY 1580.0263
LEU 1590.0201
SER 1600.0202
SER 1610.0155
THR 1620.0107
LYS 1630.0071
LEU 1640.0049
GLY 1650.0029
THR 1660.0086
GLN 1670.0103
VAL 1680.0109
GLN 1690.0110
LEU 1700.0136
GLU 1710.0181
ASN 1720.0222
LEU 1730.0192
GLN 1740.0233
GLU 1750.0233
LEU 1760.0189
LEU 1770.0223
LEU 1780.0204
SER 1790.0263
ASN 1800.0303
ASN 1810.0266
LYS 1820.0266
ILE 1830.0201
GLN 1840.0213
ALA 1850.0156
LEU 1860.0115
LYS 1870.0108
SER 1880.0086
GLU 1890.0100
GLU 1900.0067
LEU 1910.0013
ASP 1920.0059
ILE 1930.0058
PHE 1940.0082
ALA 1950.0115
ASN 1960.0162
SER 1970.0150
SER 1980.0181
LEU 1990.0165
LYS 2000.0214
LYS 2010.0201
LEU 2020.0158
GLU 2030.0197
LEU 2040.0185
SER 2050.0241
SER 2060.0268
ASN 2070.0238
GLN 2080.0246
ILE 2090.0193
LYS 2100.0216
GLU 2110.0176
PHE 2120.0125
SER 2130.0138
PRO 2140.0138
GLY 2150.0108
CYS 2160.0064
PHE 2170.0019
HIS 2180.0072
ALA 2190.0070
ILE 2200.0070
GLY 2210.0118
ARG 2220.0128
LEU 2230.0102
PHE 2240.0141
GLY 2250.0143
LEU 2260.0111
PHE 2270.0151
LEU 2280.0156
ASN 2290.0204
ASN 2300.0240
VAL 2310.0202
GLN 2320.0202
LEU 2330.0165
GLY 2340.0155
PRO 2350.0129
SER 2360.0162
LEU 2370.0146
THR 2380.0105
GLU 2390.0107
LYS 2400.0119
LEU 2410.0083
CYS 2420.0059
LEU 2430.0093
GLU 2440.0074
LEU 2450.0038
ALA 2460.0078
ASN 2470.0108
THR 2480.0084
SER 2490.0107
ILE 2500.0076
ARG 2510.0087
ASN 2520.0089
LEU 2530.0069
SER 2540.0105
LEU 2550.0115
SER 2560.0134
ASN 2570.0151
SER 2580.0141
GLN 2590.0147
LEU 2600.0120
SER 2610.0101
THR 2620.0089
THR 2630.0074
SER 2640.0080
ASN 2650.0078
THR 2660.0105
THR 2670.0087
PHE 2680.0060
LEU 2690.0082
GLY 2700.0078
LEU 2710.0052
LYS 2720.0081
TRP 2730.0094
THR 2740.0070
ASN 2750.0081
LEU 2760.0034
THR 2770.0049
MET 2780.0046
LEU 2790.0035
ASP 2800.0061
LEU 2810.0080
SER 2820.0086
TYR 2830.0094
ASN 2840.0089
ASN 2850.0081
LEU 2860.0064
ASN 2870.0058
VAL 2880.0051
VAL 2890.0047
GLY 2900.0045
ASN 2910.0045
ASP 2920.0042
SER 2930.0046
PHE 2940.0033
ALA 2950.0038
TRP 2960.0054
LEU 2970.0035
PRO 2980.0046
GLN 2990.0046
LEU 3000.0025
GLU 3010.0015
TYR 3020.0008
PHE 3030.0011
PHE 3040.0025
LEU 3050.0037
GLU 3060.0057
TYR 3070.0060
ASN 3080.0054
ASN 3090.0049
ILE 3100.0040
GLN 3110.0040
HIS 3120.0033
LEU 3130.0025
PHE 3140.0020
SER 3150.0014
HIS 3160.0019
SER 3170.0023
LEU 3180.0014
HIS 3190.0016
GLY 3200.0021
LEU 3210.0014
PHE 3220.0015
ASN 3230.0020
VAL 3240.0018
ARG 3250.0023
TYR 3260.0025
LEU 3270.0017
ASN 3280.0015
LEU 3290.0016
LYS 3300.0018
ARG 3310.0042
SER 3320.0035
PHE 3330.0032
THR 3340.0047
LYS 3350.0061
GLN 3360.0073
SER 3370.0101
ILE 3380.0107
SER 3390.0135
LEU 3400.0130
ALA 3410.0098
SER 3420.0083
LEU 3430.0060
PRO 3440.0038
LYS 3450.0036
ILE 3460.0021
ASP 3470.0024
ASP 3480.0028
PHE 3490.0025
SER 3500.0015
PHE 3510.0017
GLN 3520.0020
TRP 3530.0016
LEU 3540.0021
LYS 3550.0028
CYS 3560.0033
LEU 3570.0033
GLU 3580.0045
HIS 3590.0044
LEU 3600.0033
ASN 3610.0029
MET 3620.0018
GLU 3630.0018
ASP 3640.0014
ASN 3650.0011
ASP 3660.0015
ILE 3670.0010
PRO 3680.0021
GLY 3690.0025
ILE 3700.0030
LYS 3710.0034
SER 3720.0047
ASN 3730.0041
MET 3740.0028
PHE 3750.0036
THR 3760.0041
GLY 3770.0041
LEU 3780.0043
ILE 3790.0053
ASN 3800.0056
LEU 3810.0061
LYS 3820.0074
TYR 3830.0068
LEU 3840.0055
SER 3850.0052
LEU 3860.0040
SER 3870.0044
ASN 3880.0034
SER 3890.0024
PHE 3900.0015
THR 3910.0028
SER 3920.0031
LEU 3930.0037
ARG 3940.0040
THR 3950.0045
LEU 3960.0061
THR 3970.0061
ASN 3980.0066
GLU 3990.0064
THR 4000.0061
PHE 4010.0064
VAL 4020.0066
SER 4030.0058
LEU 4040.0066
ALA 4050.0078
HIS 4060.0078
SER 4070.0074
PRO 4080.0089
LEU 4090.0086
HIS 4100.0099
ILE 4110.0096
LEU 4120.0084
ASN 4130.0080
LEU 4140.0070
THR 4150.0072
LYS 4160.0068
ASN 4170.0057
LYS 4180.0060
ILE 4190.0062
SER 4200.0065
LYS 4210.0065
ILE 4220.0074
GLU 4230.0074
SER 4240.0083
ASP 4250.0089
ALA 4260.0082
PHE 4270.0090
SER 4280.0095
TRP 4290.0088
LEU 4300.0094
GLY 4310.0111
HIS 4320.0113
LEU 4330.0109
GLU 4340.0117
VAL 4350.0112
LEU 4360.0104
ASP 4370.0101
LEU 4380.0095
GLY 4390.0095
LEU 4400.0090
ASN 4410.0088
GLU 4420.0085
ILE 4430.0086
GLY 4440.0084
GLN 4450.0085
GLU 4460.0095
LEU 4470.0095
THR 4480.0095
GLY 4490.0097
GLN 4500.0097
GLU 4510.0096
TRP 4520.0103
ARG 4530.0105
GLY 4540.0109
LEU 4550.0111
GLU 4560.0123
ASN 4570.0125
ILE 4580.0119
PHE 4590.0123
GLU 4600.0117
ILE 4610.0112
TYR 4620.0108
LEU 4630.0102
SER 4640.0098
TYR 4650.0095
ASN 4660.0095
LYS 4670.0092
TYR 4680.0089
LEU 4690.0090
GLN 4700.0088
LEU 4710.0087
THR 4720.0092
ARG 4730.0089
ASN 4740.0101
SER 4750.0100
PHE 4760.0100
ALA 4770.0103
LEU 4780.0106
VAL 4790.0108
PRO 4800.0110
SER 4810.0120
LEU 4820.0113
GLN 4830.0111
ARG 4840.0107
LEU 4850.0100
MET 4860.0096
LEU 4870.0089
ARG 4880.0085
ARG 4890.0083
VAL 4900.0086
ALA 4910.0076
LEU 4920.0075
LYS 4930.0074
ASN 4940.0075
VAL 4950.0070
ASP 4960.0063
SER 4970.0078
SER 4980.0084
PRO 4990.0087
SER 5000.0078
PRO 5010.0088
PHE 5020.0081
GLN 5030.0083
PRO 5040.0099
LEU 5050.0094
ARG 5060.0092
ASN 5070.0095
LEU 5080.0087
THR 5090.0079
ILE 5100.0080
LEU 5110.0074
ASP 5120.0072
LEU 5130.0063
SER 5140.0060
ASN 5150.0059
ASN 5160.0057
ASN 5170.0042
ILE 5180.0039
ALA 5190.0032
ASN 5200.0042
ILE 5210.0040
ASN 5220.0053
ASP 5230.0052
ASP 5240.0062
MET 5250.0058
LEU 5260.0051
GLU 5270.0063
GLY 5280.0072
LEU 5290.0062
GLU 5300.0054
LYS 5310.0056
LEU 5320.0048
GLU 5330.0043
ILE 5340.0043
LEU 5350.0034
ASP 5360.0042
LEU 5370.0032
GLN 5380.0037
HIS 5390.0038
ASN 5400.0027
ASN 5410.0023
LEU 5420.0022
ALA 5430.0034
ARG 5440.0041
LEU 5450.0041
TRP 5460.0045
LYS 5470.0060
HIS 5480.0077
ALA 5490.0082
ASN 5500.0070
PRO 5510.0087
GLY 5520.0094
GLY 5530.0083
PRO 5540.0061
ILE 5550.0048
TYR 5560.0043
PHE 5570.0036
LEU 5580.0026
LYS 5590.0040
GLY 5600.0044
LEU 5610.0030
SER 5620.0029
HIS 5630.0025
LEU 5640.0018
HIS 5650.0017
ILE 5660.0025
LEU 5670.0019
ASN 5680.0025
LEU 5690.0025
GLU 5700.0035
SER 5710.0041
ASN 5720.0033
GLY 5730.0042
PHE 5740.0043
ASP 5750.0054
GLU 5760.0057
ILE 5770.0050
PRO 5780.0054
VAL 5790.0057
GLU 5800.0051
VAL 5810.0041
PHE 5820.0036
LYS 5830.0045
ASP 5840.0038
LEU 5850.0025
PHE 5860.0027
GLU 5870.0017
LEU 5880.0019
LYS 5890.0022
ILE 5900.0028
ILE 5910.0036
ASP 5920.0039
LEU 5930.0044
GLY 5940.0049
LEU 5950.0052
ASN 5960.0052
ASN 5970.0049
LEU 5980.0047
ASN 5990.0044
THR 6000.0043
LEU 6010.0053
PRO 6020.0054
ALA 6030.0054
SER 6040.0050
VAL 6050.0048
PHE 6060.0049
ASN 6070.0052
ASN 6080.0043
GLN 6090.0037
VAL 6100.0035
SER 6110.0034
LEU 6120.0038
LYS 6130.0039
SER 6140.0043
LEU 6150.0046
ASN 6160.0053
LEU 6170.0048
GLN 6180.0049
LYS 6190.0048
ASN 6200.0045
LEU 6210.0039
ILE 6220.0035
THR 6230.0018
SER 6240.0016
VAL 6250.0028
GLU 6260.0037
LYS 6270.0042
LYS 6280.0042
VAL 6290.0045
PHE 6300.0048
GLY 6310.0049
PRO 6320.0052
ALA 6330.0053
PHE 6340.0052
ARG 6350.0053
ASN 6360.0044
LEU 6370.0049
THR 6380.0056
GLU 6390.0059
LEU 6400.0053
ASP 6410.0061
MET 6420.0048
ARG 6430.0052
PHE 6440.0046
ASN 6450.0033
PRO 6460.0027
PHE 6470.0025
ASP 6480.0020
CYS 6490.0040
THR 6500.0044
CYS 6510.0041
GLU 6520.0027
SER 6530.0010
ILE 6540.0026
ALA 6550.0035
TRP 6560.0032
PHE 6570.0042
VAL 6580.0051
ASN 6590.0051
TRP 6600.0057
ILE 6610.0065
ASN 6620.0068
GLU 6630.0068
THR 6640.0075
HIS 6650.0088
THR 6660.0059
ASN 6670.0072
ILE 6680.0071
PRO 6690.0084
GLU 6700.0088
LEU 6710.0083
SER 6720.0089
SER 6730.0088
HIS 6740.0072
TYR 6750.0058
LEU 6760.0064
CYS 6770.0051
ASN 6780.0040
THR 6790.0037
PRO 6800.0060
PRO 6810.0081
HIS 6820.0099
TYR 6830.0083
HIS 6840.0076
GLY 6850.0085
PHE 6860.0089
PRO 6870.0084
VAL 6880.0065
ARG 6890.0079
LEU 6900.0091
PHE 6910.0080
ASP 6920.0090
THR 6930.0074
SER 6940.0093
SER 6950.0093
CYS 6960.0071
GLU 10.0186
ALA 20.0182
ALA 30.0159
ALA 40.0137
LYS 50.0135
MET 60.0129
GLN 70.0117
ARG 80.0096
LEU 90.0109
VAL 100.0118
LEU 110.0097
LEU 120.0090
LEU 130.0117
ALA 140.0120
ILE 150.0100
SER 160.0126
LEU 170.0176
LEU 180.0166
LEU 190.0159
TYR 200.0210
GLN 210.0253
ASP 220.0245
LEU 230.0267
PRO 240.0315
VAL 250.0323
ARG 260.0127
SER 270.0171
GLU 280.0164
PHE 290.0266
GLU 300.0249
LEU 310.0127
ASP 320.0094
ARG 330.0138
ILE 340.0124
CYS 350.0106
GLY 360.0129
TYR 370.0180
GLY 380.0170
THR 390.0161
ALA 400.0096
ARG 410.0076
CYS 420.0053
ARG 430.0071
LYS 440.0074
LYS 450.0062
CYS 460.0070
ARG 470.0104
SER 480.0120
GLN 490.0134
GLU 500.0102
TYR 510.0074
ARG 520.0037
ILE 530.0049
GLY 540.0042
ARG 550.0052
CYS 560.0074
PRO 570.0115
ASN 580.0123
THR 590.0102
TYR 600.0071
ALA 610.0030
CYS 620.0034
CYS 630.0056
LEU 640.0082
ARG 650.0109
LYS 660.0155
TRP 670.0144
ASP 680.0126
GLU 690.0118
SER 700.0110
LEU 710.0091
LEU 720.0104
ASN 730.0083
ARG 740.0069
THR 750.0089
LYS 760.0115
PRO 770.0096
GLU 780.0193
ALA 790.0236
ALA 800.0164
ALA 810.0142
LYS 820.0152
LYS 830.0132
GLU 840.0137
MET 850.0124
ASN 860.0103
LEU 870.0074
SER 880.0054
VAL 890.0035
GLY 900.0050
LEU 910.0059
GLY 920.0103
GLY 930.0133
GLY 940.0133
SER 950.0101
ASN 960.0082
LEU 970.0070
SER 980.0092
VAL 990.0104
GLY 1000.0136
LEU 1010.0115
GLY 1020.0072
GLU 1030.0120
ILE 1040.0147
GLY 1050.0232
GLY 1060.0383
GLY 1070.0289
SER 1080.0217
LYS 1090.0121
LEU 1100.0091
LEU 1110.0082
ASP 1120.0088
ILE 1130.0068
ASN 1140.0079
LEU 1150.0069
GLY 1160.0062
ARG 1170.0066
GLY 1180.0055
GLY 1190.0109
GLY 1200.0140
SER 1210.0078
MET 1220.0074
VAL 1230.0068
ASP 1240.0068
LEU 1250.0070
THR 1260.0076
PHE 1270.0087
GLY 1280.0083
GLY 1290.0097
VAL 1300.0107
GLY 1310.0047
GLY 1320.0043
GLY 1330.0044
SER 1340.0065
THR 1350.0072
PHE 1360.0086
THR 1370.0066
PHE 1380.0063
PHE 1390.0046
PRO 1400.0042
LEU 1410.0027
VAL 1420.0039
ILE 1430.0048
GLY 1440.0055
GLY 1450.0076
GLY 1460.0105
SER 1470.0100
ASP 1480.0095
ALA 1490.0084
MET 1500.0071
TYR 1510.0044
LEU 1520.0059
GLY 1530.0058
PHE 1540.0073
ALA 1550.0072
ALA 1560.0068
GLY 1570.0061
GLY 1580.0047
GLY 1590.0041
SER 1600.0036
ALA 1610.0064
GLY 1620.0076
GLY 1630.0088
GLU 1640.0101
ASN 1650.0100
HIS 1660.0084
VAL 1670.0077
ALA 1680.0071
PHE 1690.0066
GLY 1700.0068
PRO 1710.0061
GLY 1720.0081
PRO 1730.0079
GLY 1740.0057
VAL 1750.0056
ASP 1760.0078
LEU 1770.0086
THR 1780.0099
PHE 1790.0114
GLY 1800.0130
GLY 1810.0149
VAL 1820.0150
GLN 1830.0127
PHE 1840.0116
ALA 1850.0107
MET 1860.0063
VAL 1870.0097
ASN 1880.0171
ASN 1890.0257
GLY 1900.0330
PRO 1910.0276
GLY 1920.0280
PRO 1930.0238
GLY 1940.0164
GLU 1950.0052
SER 1960.0105
PHE 1970.0082
THR 1980.0092
ALA 1990.0071
GLN 2000.0065
PRO 2010.0067
ALA 2020.0097
ASP 2030.0111
MET 2040.0111
GLN 2050.0177
ALA 2060.0102
GLY 2070.0286
ILE 2080.0128
LYS 2090.0253
GLY 2100.0336
PRO 2110.0171
GLY 2120.0156
PRO 2130.0102
GLY 2140.0164
GLY 2150.0217
SER 2160.0355
ILE 2170.0211
GLN 2180.0124
VAL 2190.0149
ILE 2200.0129
ASN 2210.0101
GLY 2220.0084
SER 2230.0090
THR 2240.0083
ILE 2250.0070
GLY 2260.0027
THR 2270.0058
GLY 2280.0099
SER 2290.0137
LYS 2300.0092
LYS 2310.0029
THR 2320.0029
ILE 2330.0037
LEU 2340.0066
ILE 2350.0073
TYR 2360.0077
SER 2370.0061
ILE 2380.0059
ILE 2390.0070
GLY 2400.0096
VAL 2410.0141
LYS 2420.0173
LYS 2430.0184
GLY 2440.0125
THR 2450.0106
LEU 2460.0077
ALA 2470.0094
TRP 2480.0091
ALA 2490.0105
ARG 2500.0110
THR 2510.0104
GLY 2520.0076
PHE 2530.0065
SER 2540.0054
PRO 2550.0043
ALA 2560.0055
LYS 2570.0047
LYS 2580.0047
LEU 2590.0099
ASN 2600.0160
ALA 2610.0137
GLY 2620.0099
VAL 2630.0063
VAL 2640.0052
ARG 2650.0061
VAL 2660.0078
PHE 2670.0085
PHE 2680.0098
LEU 2690.0105
ASN 2700.0130
GLN 2710.0114
LYS 2720.0081
LYS 2730.0076
ALA 2740.0089
LYS 2750.0078
ASP 2760.0044
VAL 2770.0053
LEU 2780.0083
ARG 2790.0074
LYS 2800.0047
THR 2810.0057
SER 2820.0032
ARG 2830.0036
PRO 2840.0027
MET 2850.0014
VAL 2860.0125
ASP 2870.0116
LEU 2880.0033
THR 2890.0130
PHE 2900.0088
GLY 2910.0047
GLY 2920.0251

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.